Wall clock time and date at job start Tue Mar 31 2020 07:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 H 1.08991 * 109.47162 * 54.99491 * 3 2 1 5 5 C 1.50696 * 109.47113 * 174.99902 * 3 2 1 6 6 H 1.07999 * 120.00072 * 119.99882 * 5 3 2 7 7 C 1.37872 * 119.99982 * 299.99922 * 5 3 2 8 8 N 1.31515 * 120.00138 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00191 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47493 * 59.99538 * 9 7 5 11 11 H 1.48504 * 109.47149 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46854 * 299.99398 * 9 7 5 13 13 N 1.46501 * 109.46821 * 294.99869 * 3 2 1 14 14 C 1.34775 * 120.00398 * 85.00030 * 13 3 2 15 15 O 1.21596 * 119.99668 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00364 * 179.97438 * 14 13 3 17 17 C 1.40172 * 120.00269 * 185.31730 * 16 14 13 18 18 C 1.39395 * 119.88446 * 33.55731 * 17 16 14 19 19 C 1.37646 * 120.60860 * 180.28003 * 18 17 16 20 20 C 1.39121 * 120.01819 * 359.73351 * 19 18 17 21 21 N 1.37888 * 133.34259 * 180.02562 * 20 19 18 22 22 H 0.97004 * 125.06765 * 0.02562 * 21 20 19 23 23 C 1.36798 * 109.85602 * 179.97438 * 21 20 19 24 24 C 1.34237 * 109.93913 * 359.97438 * 23 21 20 25 25 C 1.40631 * 119.53908 * 359.97438 * 20 19 18 26 26 C 1.38182 * 119.88220 * 213.28984 * 17 16 14 27 27 H 1.08993 * 109.47320 * 300.00531 * 1 2 3 28 28 H 1.09005 * 109.46974 * 60.00277 * 1 2 3 29 29 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46981 * 239.99893 * 2 1 3 31 31 H 1.08996 * 109.46793 * 119.99589 * 2 1 3 32 32 H 0.97001 * 120.00840 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99827 * 264.99956 * 13 3 2 34 34 H 0.97002 * 119.99809 * 5.32141 * 16 14 13 35 35 H 1.08002 * 119.69372 * 0.02562 * 18 17 16 36 36 H 1.08003 * 119.99381 * 179.74441 * 19 18 17 37 37 H 1.08000 * 125.03167 * 179.97438 * 23 21 20 38 38 H 1.08002 * 126.48635 * 180.02562 * 24 23 21 39 39 H 1.08000 * 120.20633 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1733 9 14 6.0049 0.8814 1.3819 10 1 6.4995 2.2816 1.3822 11 1 6.3977 0.2179 2.6511 12 1 6.5975 0.1473 0.2351 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3416 2.6318 -0.4322 16 7 0.0788 3.2673 -2.5186 17 6 -1.1409 3.9529 -2.6025 18 6 -1.6420 4.6182 -1.4847 19 6 -2.8409 5.2913 -1.5488 20 6 -3.5620 5.3169 -2.7382 21 7 -4.7608 5.8904 -3.1060 22 1 -5.3308 6.4141 -2.5213 23 6 -5.0258 5.6117 -4.4188 24 6 -4.0361 4.8680 -4.9377 25 6 -3.0568 4.6521 -3.8698 26 6 -1.8396 3.9717 -3.7945 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8291 -0.0609 2.9500 33 1 2.2720 2.1231 -1.9978 34 1 0.6663 3.2266 -3.2894 35 1 -1.0864 4.6018 -0.5587 36 1 -3.2219 5.8000 -0.6755 37 1 -5.9017 5.9412 -4.9580 38 1 -3.9736 4.4988 -5.9508 39 1 -1.4486 3.4601 -4.6616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157331201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:44 Heat of formation + Delta-G solvation = 8.006656 kcal Electronic energy + Delta-G solvation = -22036.795738 eV Core-core repulsion = 18750.902680 eV Total energy + Delta-G solvation = -3285.893058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.10866 -41.16698 -38.36156 -36.74818 -35.07198 -34.17636 -32.81333 -32.50326 -29.64759 -29.49580 -28.44396 -25.07840 -23.79655 -23.43617 -21.93489 -21.43216 -21.18065 -19.79193 -18.75437 -18.44538 -17.78199 -17.00307 -16.91918 -16.19570 -15.82822 -15.32909 -15.24335 -14.84417 -14.70179 -14.52840 -14.15987 -13.90665 -13.66922 -13.52885 -13.34274 -13.14872 -12.86706 -12.81699 -12.62797 -12.17217 -12.04859 -11.87168 -11.57691 -11.13795 -11.01787 -10.74611 -10.54211 -10.50256 -9.62974 -8.79040 -8.38255 -8.13848 -6.31060 0.21369 0.62914 1.46381 1.48351 1.55887 1.86820 1.92739 2.30398 2.37235 2.44890 3.01915 3.15502 3.53019 3.85333 4.06373 4.31759 4.42548 4.50137 4.51773 4.59617 4.66183 4.77177 4.78970 5.05778 5.08893 5.19084 5.25707 5.30795 5.44046 5.47472 5.55310 5.60501 5.66021 5.80470 5.87670 5.90168 5.94357 6.19161 6.28774 6.36733 6.77044 6.81657 7.32199 7.37870 7.79069 8.91411 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.038816 B = 0.003207 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.187337 B = 8730.066412 C = 8831.878484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.716 5.716 14 C 0.693 3.307 15 O -0.614 6.614 16 N -0.678 5.678 17 C 0.138 3.862 18 C -0.122 4.122 19 C -0.113 4.113 20 C 0.060 3.940 21 N -0.590 5.590 22 H 0.428 0.572 23 C 0.071 3.929 24 C -0.233 4.233 25 C -0.108 4.108 26 C -0.113 4.113 27 H 0.024 0.976 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.401 0.599 34 H 0.418 0.582 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.214 0.786 38 H 0.163 0.837 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 10.221 -15.456 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.494 6.494 16 N -0.328 5.328 17 C 0.042 3.958 18 C -0.143 4.143 19 C -0.134 4.134 20 C -0.047 4.047 21 N -0.195 5.195 22 H 0.267 0.733 23 C -0.056 4.056 24 C -0.258 4.258 25 C -0.113 4.113 26 C -0.135 4.135 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.255 0.745 35 H 0.129 0.871 36 H 0.153 0.847 37 H 0.230 0.770 38 H 0.180 0.820 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.420 10.131 -14.316 22.705 hybrid contribution 1.363 -0.025 0.360 1.410 sum -13.058 10.107 -13.955 21.619 Atomic orbital electron populations 1.21638 0.97149 0.98805 1.00143 1.21804 0.93556 0.99354 1.01268 1.18250 0.93397 0.88762 0.80231 0.98301 1.21539 0.91343 1.39001 1.06754 0.91011 1.25753 1.03274 0.94386 0.94992 1.70044 1.37121 1.38294 1.09843 0.85425 0.79117 0.78391 0.77543 1.19750 1.21230 1.18901 1.45439 1.13856 1.59145 1.18461 1.16176 0.82892 0.78567 0.83038 1.90878 1.52703 1.65698 1.40127 1.42493 1.20726 1.55532 1.14029 1.17361 0.87415 0.95905 0.95113 1.20813 0.97352 0.97762 0.98376 1.19965 0.94663 1.02672 0.96121 1.18316 0.89804 1.01119 0.95457 1.41876 1.18355 1.47395 1.11847 0.73269 1.22501 1.00931 0.98800 0.83362 1.21955 0.95651 1.08662 0.99527 1.19334 0.95866 1.01235 0.94900 1.20263 0.93829 1.02268 0.97151 0.95630 0.94113 0.93861 0.94071 0.90903 0.92585 0.76434 0.74485 0.87118 0.84673 0.76965 0.81954 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.51 71.98 0.61 -5.03 16 2 C -0.12 -6.06 5.45 30.60 0.17 -5.89 16 3 C 0.30 15.40 2.24 44.25 0.10 15.50 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -29.04 8.73 25.60 0.22 -28.82 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -52.54 11.29 21.45 0.24 -52.30 16 9 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 13 N -0.72 -30.07 5.03 -461.41 -2.32 -32.39 16 14 C 0.69 28.76 6.86 179.06 1.23 29.99 16 15 O -0.61 -30.37 11.17 -4.02 -0.04 -30.41 16 16 N -0.68 -21.70 5.35 -317.10 -1.70 -23.40 16 17 C 0.14 4.44 6.27 38.07 0.24 4.68 16 18 C -0.12 -4.20 8.62 22.41 0.19 -4.01 16 19 C -0.11 -3.20 10.06 22.34 0.22 -2.97 16 20 C 0.06 1.50 7.27 38.99 0.28 1.78 16 21 N -0.59 -9.51 6.08 -187.52 -1.14 -10.65 16 22 H 0.43 4.15 8.96 -92.71 -0.83 3.32 16 23 C 0.07 0.92 11.81 83.00 0.98 1.90 16 24 C -0.23 -4.22 11.08 23.51 0.26 -3.96 16 25 C -0.11 -2.74 6.37 -20.20 -0.13 -2.87 16 26 C -0.11 -3.05 10.01 22.60 0.23 -2.82 16 27 H 0.02 1.28 7.84 -2.39 -0.02 1.26 16 28 H 0.04 1.88 5.64 -2.38 -0.01 1.87 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 4.07 5.95 -2.39 -0.01 4.05 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.40 14.08 8.56 -92.71 -0.79 13.29 16 34 H 0.42 10.07 8.83 -92.71 -0.82 9.25 16 35 H 0.11 4.47 6.41 -2.91 -0.02 4.46 16 36 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -72.30 322.69 0.79 -71.50 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -1.33 Total: 34.70 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.06 Total: -1.20 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -4.91 Total: -118.74 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.04 Total: -30.41 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -72.30 0.79 -71.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157331201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.507 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds