Wall clock time and date at job start Tue Mar 31 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46563 * 2 1 4 4 C 1.50702 * 109.47439 * 240.00059 * 2 1 3 5 5 H 1.07993 * 120.00044 * 239.99916 * 4 2 1 6 6 C 1.37877 * 119.99839 * 59.99725 * 4 2 1 7 7 N 1.31515 * 120.00133 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99868 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47155 * 59.99792 * 8 6 4 10 10 H 1.48500 * 109.47071 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46661 * 299.99850 * 8 6 4 12 12 C 1.53000 * 109.47211 * 119.99811 * 2 1 3 13 13 N 1.46505 * 109.47120 * 300.00172 * 12 2 1 14 14 C 1.34774 * 120.00023 * 179.97438 * 13 12 2 15 15 O 1.21604 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.47515 * 120.00203 * 180.02562 * 14 13 12 17 17 C 1.46510 * 120.16671 * 0.02756 * 16 14 13 18 18 C 1.35526 * 119.04967 * 179.97438 * 17 16 14 19 19 C 1.41240 * 119.42431 * 359.96729 * 18 17 16 20 20 C 1.37912 * 132.97028 * 180.02562 * 19 18 17 21 21 N 1.33440 * 107.65701 * 179.74728 * 20 19 18 22 22 C 1.30743 * 109.94105 * 0.43675 * 21 20 19 23 23 N 1.35925 * 109.20482 * 359.55878 * 22 21 20 24 24 C 1.36324 * 120.17074 * 180.02562 * 16 14 13 25 25 H 1.08995 * 109.47247 * 299.99832 * 1 2 3 26 26 H 1.08997 * 109.46815 * 60.00447 * 1 2 3 27 27 H 1.09005 * 109.46909 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46604 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47190 * 299.99323 * 3 2 1 30 30 H 1.08995 * 109.47202 * 60.00140 * 3 2 1 31 31 H 0.97001 * 119.99888 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46900 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47335 * 60.00443 * 12 2 1 34 34 H 0.96994 * 119.99774 * 0.02562 * 13 12 2 35 35 H 1.07999 * 120.46984 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.28933 * 179.97438 * 18 17 16 37 37 H 1.08007 * 126.16774 * 0.02577 * 20 19 18 38 38 H 1.08002 * 125.40208 * 179.83155 * 22 21 20 39 39 H 1.08005 * 119.74353 * 0.02598 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0325 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1207 -4.0080 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5760 -1.4800 3.7811 16 6 1.3847 0.2038 4.8740 17 6 0.5416 1.3949 4.7438 18 6 0.1015 2.0154 5.8655 19 6 0.4636 1.5015 7.1302 20 6 0.1820 1.8967 8.4212 21 7 0.7820 1.0377 9.2474 22 6 1.4294 0.1345 8.5585 23 7 1.2593 0.3773 7.2320 24 6 1.7119 -0.2590 6.1139 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.7088 1.1612 -3.4844 32 1 3.1301 -0.7208 1.2494 33 1 1.6768 -1.7489 1.2493 34 1 0.9937 0.7578 2.3564 35 1 0.2747 1.7730 3.7680 36 1 -0.5206 2.8952 5.7928 37 1 -0.4196 2.7456 8.7110 38 1 2.0042 -0.6784 8.9770 39 1 2.3337 -1.1367 6.2113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458016607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:15 Heat of formation + Delta-G solvation = 46.527399 kcal Electronic energy + Delta-G solvation = -22001.829443 eV Core-core repulsion = 18717.606770 eV Total energy + Delta-G solvation = -3284.222673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.91751 -39.65897 -37.11589 -36.37307 -33.87891 -33.24441 -31.41502 -30.61425 -28.33833 -26.10778 -25.81229 -25.28669 -23.70556 -23.13856 -22.01267 -20.55761 -18.94218 -18.35858 -17.27408 -16.67226 -16.07966 -16.02327 -15.58955 -14.85157 -14.85040 -14.76252 -14.64723 -13.74755 -13.63829 -13.12385 -12.99694 -12.99673 -12.29147 -11.98202 -11.84511 -11.46519 -11.26157 -10.99583 -10.91238 -10.78829 -10.55480 -10.47147 -10.27827 -9.90192 -9.72440 -9.48558 -9.39854 -8.88177 -8.59035 -8.41408 -7.79580 -6.08363 -4.18825 0.46403 0.80635 2.26291 2.60271 2.93855 3.26178 3.30856 3.33647 3.51996 3.53396 4.18856 4.34368 4.35595 4.46427 4.57780 4.72317 4.76872 5.18643 5.20541 5.31619 5.54532 5.70570 5.90710 6.11356 6.21501 6.21567 6.32150 6.41098 6.64043 6.72535 6.81738 6.86494 6.86806 6.92843 7.26131 7.47289 7.59297 7.62575 7.84322 7.93033 8.05645 8.29638 8.44523 8.81428 9.47436 10.93112 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.043176 B = 0.003176 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.353372 B = 8812.705710 C = 9269.995995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.130 3.870 13 N -0.703 5.703 14 C 0.558 3.442 15 O -0.549 6.549 16 C -0.145 4.145 17 C -0.099 4.099 18 C -0.080 4.080 19 C 0.006 3.994 20 C -0.022 4.022 21 N -0.454 5.454 22 C 0.149 3.851 23 N -0.376 5.376 24 C 0.120 3.880 25 H 0.005 0.995 26 H 0.087 0.913 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.005 0.995 31 H 0.261 0.739 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.399 0.601 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.181 0.819 38 H 0.214 0.786 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 3.205 15.753 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.008 3.992 13 N -0.353 5.353 14 C 0.343 3.657 15 O -0.429 6.429 16 C -0.152 4.152 17 C -0.120 4.120 18 C -0.099 4.099 19 C -0.102 4.102 20 C -0.175 4.175 21 N -0.167 5.167 22 C -0.126 4.126 23 N -0.048 5.048 24 C -0.003 4.003 25 H 0.024 0.976 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.236 0.764 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.199 0.801 38 H 0.231 0.769 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.805 2.551 16.568 16.860 hybrid contribution 0.105 -0.144 -1.797 1.806 sum -1.700 2.407 14.771 15.063 Atomic orbital electron populations 1.21848 0.97699 0.99294 1.00108 1.18364 0.92835 0.92781 0.90457 1.21848 0.98702 0.98290 1.00105 1.20929 1.31726 1.12223 0.89834 0.92411 1.24872 0.94778 0.94897 0.98871 1.69783 1.36483 1.22706 1.23444 0.86619 0.79255 0.79802 0.82116 1.20248 1.21292 1.20254 1.21833 0.98408 0.95937 0.82999 1.46218 1.51819 1.31557 1.05697 1.17675 0.80877 0.84036 0.83100 1.90783 1.38884 1.26374 1.86855 1.20650 1.02848 0.98506 0.93150 1.22185 0.96471 0.93846 0.99502 1.20424 1.00485 1.00560 0.88474 1.19795 1.01347 0.91965 0.97104 1.22564 1.06222 1.02352 0.86377 1.69945 1.09692 1.03744 1.33367 1.25198 1.07005 1.03832 0.76559 1.42990 1.33826 1.20702 1.07285 1.21712 0.97413 0.97515 0.83612 0.97603 0.89457 0.95328 0.95327 0.89464 0.97600 0.92870 0.92296 0.92294 0.76433 0.83821 0.83037 0.80148 0.76931 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.24 0.50 -155.65 -0.08 1.17 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -12.88 8.01 -34.44 -0.28 -13.16 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -22.92 9.35 55.43 0.52 -22.41 16 8 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 12 C 0.13 2.61 4.50 -4.04 -0.02 2.60 16 13 N -0.70 -11.69 4.92 -61.35 -0.30 -11.99 16 14 C 0.56 9.07 7.77 -12.48 -0.10 8.97 16 15 O -0.55 -10.56 16.28 5.27 0.09 -10.48 16 16 C -0.15 -1.88 5.98 -103.47 -0.62 -2.50 16 17 C -0.10 -1.07 9.73 -37.22 -0.36 -1.43 16 18 C -0.08 -0.77 10.09 -39.41 -0.40 -1.17 16 19 C 0.01 0.07 6.78 -84.02 -0.57 -0.50 16 20 C -0.02 -0.24 12.00 -16.97 -0.20 -0.45 16 21 N -0.45 -5.48 11.18 -13.78 -0.15 -5.63 16 22 C 0.15 1.55 12.76 -89.36 -1.14 0.41 16 23 N -0.38 -4.27 2.94 -61.93 -0.18 -4.45 16 24 C 0.12 1.41 10.51 -16.22 -0.17 1.24 16 25 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 26 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 30 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 31 H 0.26 6.56 8.31 -40.82 -0.34 6.23 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.40 5.90 4.26 -40.82 -0.17 5.73 16 35 H 0.14 1.34 6.58 -52.49 -0.35 0.99 16 36 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.21 1.40 8.06 -52.49 -0.42 0.97 16 39 H 0.18 1.87 7.56 -52.48 -0.40 1.47 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -29.52 322.53 -8.38 -37.90 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.76 Total: 5.23 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -3.42 Total: -8.24 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.12 Total: -44.48 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.52 -8.38 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458016607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.426 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds