Wall clock time and date at job start Tue Mar 31 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46563 * 2 1 4 4 C 1.50702 * 109.47439 * 240.00059 * 2 1 3 5 5 H 1.07993 * 120.00044 * 239.99916 * 4 2 1 6 6 C 1.37877 * 119.99839 * 59.99725 * 4 2 1 7 7 N 1.31515 * 120.00133 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99868 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47155 * 59.99792 * 8 6 4 10 10 H 1.48500 * 109.47071 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46661 * 299.99850 * 8 6 4 12 12 C 1.53000 * 109.47211 * 119.99811 * 2 1 3 13 13 N 1.46505 * 109.47120 * 300.00172 * 12 2 1 14 14 C 1.34774 * 120.00023 * 179.97438 * 13 12 2 15 15 O 1.21604 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.47515 * 120.00203 * 180.02562 * 14 13 12 17 17 C 1.46510 * 120.16671 * 0.02756 * 16 14 13 18 18 C 1.35526 * 119.04967 * 179.97438 * 17 16 14 19 19 C 1.41240 * 119.42431 * 359.96729 * 18 17 16 20 20 C 1.37912 * 132.97028 * 180.02562 * 19 18 17 21 21 N 1.33440 * 107.65701 * 179.74728 * 20 19 18 22 22 C 1.30743 * 109.94105 * 0.43675 * 21 20 19 23 23 N 1.35925 * 109.20482 * 359.55878 * 22 21 20 24 24 C 1.36324 * 120.17074 * 180.02562 * 16 14 13 25 25 H 1.08995 * 109.47247 * 299.99832 * 1 2 3 26 26 H 1.08997 * 109.46815 * 60.00447 * 1 2 3 27 27 H 1.09005 * 109.46909 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46604 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47190 * 299.99323 * 3 2 1 30 30 H 1.08995 * 109.47202 * 60.00140 * 3 2 1 31 31 H 0.97001 * 119.99888 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46900 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47335 * 60.00443 * 12 2 1 34 34 H 0.96994 * 119.99774 * 0.02562 * 13 12 2 35 35 H 1.07999 * 120.46984 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.28933 * 179.97438 * 18 17 16 37 37 H 1.08007 * 126.16774 * 0.02577 * 20 19 18 38 38 H 1.08002 * 125.40208 * 179.83155 * 22 21 20 39 39 H 1.08005 * 119.74353 * 0.02598 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0325 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1207 -4.0080 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5760 -1.4800 3.7811 16 6 1.3847 0.2038 4.8740 17 6 0.5416 1.3949 4.7438 18 6 0.1015 2.0154 5.8655 19 6 0.4636 1.5015 7.1302 20 6 0.1820 1.8967 8.4212 21 7 0.7820 1.0377 9.2474 22 6 1.4294 0.1345 8.5585 23 7 1.2593 0.3773 7.2320 24 6 1.7119 -0.2590 6.1139 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.7088 1.1612 -3.4844 32 1 3.1301 -0.7208 1.2494 33 1 1.6768 -1.7489 1.2493 34 1 0.9937 0.7578 2.3564 35 1 0.2747 1.7730 3.7680 36 1 -0.5206 2.8952 5.7928 37 1 -0.4196 2.7456 8.7110 38 1 2.0042 -0.6784 8.9770 39 1 2.3337 -1.1367 6.2113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458016607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:15 Heat of formation + Delta-G solvation = 31.223991 kcal Electronic energy + Delta-G solvation = -22002.493049 eV Core-core repulsion = 18717.606770 eV Total energy + Delta-G solvation = -3284.886279 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.73635 -40.96419 -38.36071 -37.70940 -35.19513 -34.36498 -32.88942 -31.84598 -29.14427 -27.63200 -27.55455 -27.06944 -24.87884 -23.96228 -22.82914 -21.79756 -20.63848 -19.35504 -18.36620 -17.76604 -17.57344 -16.95576 -16.89454 -16.55282 -16.21957 -15.74935 -15.55998 -15.04316 -14.75798 -14.58109 -14.47268 -14.02565 -13.97276 -13.22114 -13.10063 -12.88924 -12.66081 -12.65310 -12.62605 -12.24598 -12.13235 -11.77829 -11.48210 -11.41176 -11.35113 -11.06674 -10.70591 -10.44428 -10.37807 -9.97499 -8.59534 -8.02026 -6.17562 -0.45079 0.01062 1.39552 1.44681 1.46584 1.52488 1.61063 2.08594 2.26891 2.49072 2.51088 3.22028 3.38720 3.52863 3.66092 3.76721 3.84835 3.92235 4.33539 4.50087 4.51001 4.52877 4.71848 4.78640 4.90797 4.99115 5.05844 5.10690 5.13546 5.20173 5.31898 5.44135 5.53808 5.57158 5.68145 5.68246 6.04918 6.16353 6.21791 6.43733 6.53932 6.78857 6.86430 7.14542 7.50309 8.96649 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.043176 B = 0.003176 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.353372 B = 8812.705710 C = 9269.995995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.531 4.531 5 H 0.046 0.954 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.277 1.277 12 C 0.146 3.854 13 N -0.698 5.698 14 C 0.561 3.439 15 O -0.584 6.584 16 C -0.159 4.159 17 C -0.112 4.112 18 C -0.066 4.066 19 C -0.015 4.015 20 C -0.024 4.024 21 N -0.482 5.482 22 C 0.152 3.848 23 N -0.384 5.384 24 C 0.128 3.872 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.410 0.590 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.206 0.794 38 H 0.245 0.755 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 4.130 17.132 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.569 4.569 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.349 5.349 14 C 0.349 3.651 15 O -0.467 6.467 16 C -0.165 4.165 17 C -0.133 4.133 18 C -0.086 4.086 19 C -0.122 4.122 20 C -0.176 4.176 21 N -0.196 5.196 22 C -0.122 4.122 23 N -0.056 5.056 24 C 0.005 3.995 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.248 0.752 35 H 0.176 0.824 36 H 0.203 0.797 37 H 0.222 0.778 38 H 0.261 0.739 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.482 3.508 17.959 18.466 hybrid contribution 0.312 -0.437 -2.082 2.150 sum -2.170 3.071 15.877 16.316 Atomic orbital electron populations 1.21693 0.97044 0.98774 1.00520 1.18355 0.93299 0.93052 0.90173 1.21692 0.98009 0.97808 1.00517 1.21258 1.31825 1.12277 0.91563 0.93603 1.25420 0.95128 0.95571 1.00885 1.69889 1.36874 1.23246 1.23675 0.85853 0.78624 0.78842 0.79703 1.20296 1.20918 1.20305 1.21373 0.97372 0.95260 0.83713 1.45981 1.52123 1.31777 1.04979 1.18073 0.79894 0.83470 0.83681 1.90761 1.40461 1.28045 1.87388 1.20362 1.04552 0.99759 0.91857 1.22282 0.96871 0.93443 1.00687 1.20785 0.99598 1.00872 0.87303 1.20192 1.01844 0.92258 0.97941 1.23071 1.05729 1.02594 0.86163 1.69989 1.10759 1.04705 1.34128 1.25922 1.06177 1.03934 0.76214 1.43110 1.34142 1.20987 1.07375 1.21771 0.96754 0.97395 0.83566 0.94285 0.91829 0.96266 0.96263 0.91835 0.94283 0.93013 0.93780 0.93780 0.75164 0.82401 0.79743 0.77752 0.73939 0.79532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 2 C 0.05 2.28 0.50 -52.92 -0.03 2.26 16 3 C -0.12 -5.17 8.08 71.98 0.58 -4.58 16 4 C -0.53 -27.20 8.01 25.60 0.21 -27.00 16 5 H 0.05 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.54 5.15 84.65 0.44 1.97 16 7 N -0.90 -46.63 9.35 21.45 0.20 -46.43 16 8 Si 0.94 41.66 29.54 68.60 2.03 43.68 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 C 0.15 5.88 4.50 86.38 0.39 6.27 16 13 N -0.70 -22.44 4.92 -466.27 -2.29 -24.73 16 14 C 0.56 17.82 7.77 86.69 0.67 18.49 16 15 O -0.58 -22.51 16.28 -4.04 -0.07 -22.58 16 16 C -0.16 -3.86 5.98 -19.12 -0.11 -3.98 16 17 C -0.11 -2.13 9.73 23.80 0.23 -1.90 16 18 C -0.07 -1.07 10.09 22.38 0.23 -0.85 16 19 C -0.01 -0.30 6.78 38.81 0.26 -0.03 16 20 C -0.02 -0.45 12.00 84.37 1.01 0.56 16 21 N -0.48 -10.61 11.18 -197.51 -2.21 -12.82 16 22 C 0.15 2.85 12.76 179.91 2.30 5.14 16 23 N -0.38 -7.93 2.94 -349.85 -1.03 -8.96 16 24 C 0.13 2.81 10.51 83.54 0.88 3.69 16 25 H 0.04 1.34 6.86 -2.39 -0.02 1.32 16 26 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 27 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 30 H 0.04 1.34 6.86 -2.39 -0.02 1.32 16 31 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.41 11.22 4.26 -92.71 -0.39 10.83 16 35 H 0.16 2.44 6.58 -2.91 -0.02 2.42 16 36 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.21 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.24 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.19 3.69 7.56 -2.91 -0.02 3.67 16 Total: -1.00 -63.59 322.53 4.94 -58.64 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.68 Total: 17.74 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 7.63 Total: -4.55 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -5.33 Total: -92.94 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.07 Total: -22.58 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -63.59 4.94 -58.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458016607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.867 kcal (2) G-P(sol) polarization free energy of solvation -63.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds