Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46818 * 2 1 4 4 C 1.53005 * 109.46818 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46912 * 179.97438 * 4 3 2 6 6 C 1.36958 * 120.00202 * 264.66533 * 5 4 3 7 7 H 1.07997 * 120.00004 * 126.54110 * 6 5 4 8 8 C 1.38973 * 120.00013 * 306.54143 * 6 5 4 9 9 N 1.31411 * 120.00248 * 171.99362 * 8 6 5 10 10 Si 1.86800 * 119.99789 * 351.98725 * 8 6 5 11 11 H 1.48506 * 109.47276 * 92.62597 * 10 8 6 12 12 H 1.48506 * 109.47362 * 212.62590 * 10 8 6 13 13 H 1.48504 * 109.47279 * 332.62706 * 10 8 6 14 14 C 1.34779 * 120.00071 * 84.66734 * 5 4 3 15 15 O 1.21698 * 119.99710 * 3.05835 * 14 5 4 16 16 C 1.46846 * 120.00272 * 183.05965 * 14 5 4 17 17 C 1.36481 * 126.78611 * 353.19117 * 16 14 5 18 18 N 1.35641 * 109.76063 * 179.97438 * 17 16 14 19 19 H 0.97001 * 124.78114 * 180.02562 * 18 17 16 20 20 C 1.37361 * 110.44789 * 0.26580 * 18 17 16 21 21 C 1.39349 * 134.36436 * 180.52709 * 20 18 17 22 22 C 1.37749 * 118.88110 * 179.53962 * 21 20 18 23 23 N 1.32248 * 121.45418 * 359.69266 * 22 21 20 24 24 C 1.31783 * 122.14620 * 0.02562 * 23 22 21 25 25 C 1.38980 * 120.16703 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.47048 * 60.00315 * 1 2 3 27 27 H 1.09000 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47185 * 300.00108 * 1 2 3 29 29 H 1.09000 * 109.46828 * 239.99754 * 2 1 3 30 30 H 1.08992 * 109.47091 * 120.00059 * 2 1 3 31 31 H 1.08994 * 109.47330 * 59.99981 * 3 2 1 32 32 H 1.09005 * 109.47054 * 299.99681 * 3 2 1 33 33 H 1.09000 * 109.46828 * 59.99754 * 4 3 2 34 34 H 1.08996 * 109.47255 * 299.99566 * 4 3 2 35 35 H 0.97008 * 120.00114 * 180.02562 * 9 8 6 36 36 H 1.07999 * 125.12438 * 359.97438 * 17 16 14 37 37 H 1.07997 * 120.56054 * 359.24909 * 21 20 18 38 38 H 1.08001 * 119.27782 * 179.71527 * 22 21 20 39 39 H 1.08007 * 119.91636 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3900 3.4323 -1.1825 7 1 3.9518 4.3850 -1.4408 8 6 5.2905 2.8239 -2.0487 9 7 5.4901 3.3247 -3.2472 10 14 6.2174 1.2944 -1.5093 11 1 5.4642 0.0853 -1.9293 12 1 7.5625 1.2830 -2.1385 13 1 6.3622 1.2988 -0.0314 14 6 4.1811 3.4956 1.1606 15 8 3.9397 2.9374 2.2148 16 6 4.6062 4.9012 1.1547 17 6 5.0338 5.6212 0.0770 18 7 5.3394 6.8854 0.4620 19 1 5.6644 7.5810 -0.1308 20 6 5.1288 7.0405 1.8105 21 6 5.2672 8.1020 2.7025 22 6 4.9483 7.9033 4.0278 23 7 4.5108 6.7342 4.4645 24 6 4.3563 5.6995 3.6631 25 6 4.6549 5.8130 2.3106 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 3.9329 0.9287 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 6.1184 2.8997 -3.8520 36 1 5.1165 5.2416 -0.9307 37 1 5.6230 9.0630 2.3615 38 1 5.0575 8.7204 4.7256 39 1 3.9960 4.7612 4.0584 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152977310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = 33.185844 kcal Electronic energy + Delta-G solvation = -22700.673489 eV Core-core repulsion = 19415.872283 eV Total energy + Delta-G solvation = -3284.801206 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18333 -38.71565 -37.53767 -35.45732 -34.15821 -32.03757 -31.75378 -30.25525 -29.44312 -27.88630 -25.14166 -23.80724 -23.16519 -21.95589 -21.39955 -20.67546 -18.89094 -18.30343 -16.99912 -16.10847 -15.70876 -15.34658 -14.89898 -14.65808 -14.58563 -14.32009 -13.99236 -13.82459 -13.40916 -13.19514 -12.75026 -12.64894 -12.39278 -12.27291 -12.07749 -11.77391 -11.39077 -11.23886 -11.11819 -10.69051 -10.64779 -10.34303 -10.09062 -9.84389 -9.44081 -9.27348 -9.17619 -8.74266 -8.45175 -7.69472 -7.36671 -6.62718 -4.44116 1.29425 1.87232 2.66998 3.00837 3.15402 3.25625 3.39206 4.01876 4.15249 4.35277 4.51372 4.78718 4.89896 4.99660 5.33602 5.35808 5.37213 5.50662 5.53518 5.57905 5.81502 5.85472 6.06005 6.11437 6.14389 6.18274 6.21122 6.24497 6.32710 6.43548 6.49712 6.56458 6.79891 6.89466 6.96676 7.02358 7.32389 7.37833 7.80549 7.92647 8.06445 8.45868 8.81947 9.26615 9.65561 10.43044 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.006034 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.858554 B = 4639.162383 C = 5847.915842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.127 4.127 4 C 0.107 3.893 5 N -0.471 5.471 6 C -0.351 4.351 7 H 0.107 0.893 8 C 0.071 3.929 9 N -0.866 5.866 10 Si 0.881 3.119 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.257 1.257 14 C 0.565 3.435 15 O -0.592 6.592 16 C -0.197 4.197 17 C 0.112 3.888 18 N -0.585 5.585 19 H 0.416 0.584 20 C 0.107 3.893 21 C -0.183 4.183 22 C 0.084 3.916 23 N -0.509 5.509 24 C 0.162 3.838 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.278 0.722 36 H 0.231 0.769 37 H 0.125 0.875 38 H 0.150 0.850 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 3.812 3.040 5.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.165 4.165 4 C -0.016 4.016 5 N -0.192 5.192 6 C -0.478 4.478 7 H 0.124 0.876 8 C -0.137 4.137 9 N -0.501 5.501 10 Si 0.708 3.292 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.181 1.181 14 C 0.356 3.644 15 O -0.477 6.477 16 C -0.208 4.208 17 C -0.017 4.017 18 N -0.188 5.188 19 H 0.253 0.747 20 C -0.007 4.007 21 C -0.207 4.207 22 C -0.067 4.067 23 N -0.220 5.220 24 C -0.001 4.001 25 C -0.125 4.125 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.247 0.753 37 H 0.143 0.857 38 H 0.167 0.833 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.642 3.542 4.168 5.711 hybrid contribution 0.947 -0.251 -1.384 1.696 sum -0.695 3.291 2.784 4.366 Atomic orbital electron populations 1.21744 0.96246 1.00856 1.01718 1.21478 0.95514 0.97509 1.01608 1.21871 0.96233 0.95961 1.02452 1.21591 0.93732 0.85333 1.00921 1.43424 1.58560 1.11601 1.05615 1.19061 1.25491 1.07983 0.95294 0.87629 1.25553 0.95416 0.98010 0.94739 1.69653 1.34115 1.40551 1.05747 0.86738 0.79234 0.82614 0.80632 1.19713 1.21311 1.18065 1.17410 0.78532 0.85014 0.83436 1.90627 1.55694 1.70018 1.31398 1.19962 1.14519 0.94946 0.91324 1.24817 0.93242 0.81039 1.02620 1.41973 1.57296 1.13074 1.06424 0.74711 1.18440 1.01198 0.95992 0.85036 1.20926 1.08359 0.97658 0.93729 1.22218 0.96708 0.95115 0.92675 1.67758 1.15693 0.99944 1.38570 1.22406 0.92849 0.96906 0.87937 1.19925 1.04281 0.93240 0.95070 0.92867 0.93313 0.92890 0.92301 0.92242 0.91875 0.91531 0.91653 0.91697 0.91158 0.75325 0.85680 0.83256 0.81981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.03 16 3 C -0.13 -2.34 5.50 -26.73 -0.15 -2.48 16 4 C 0.11 2.26 3.87 -4.04 -0.02 2.25 16 5 N -0.47 -10.82 1.94 -116.22 -0.23 -11.05 16 6 C -0.35 -8.19 6.81 -14.99 -0.10 -8.30 16 7 H 0.11 2.51 6.03 -52.49 -0.32 2.19 16 8 C 0.07 1.71 5.41 -17.46 -0.09 1.61 16 9 N -0.87 -21.41 13.96 55.50 0.77 -20.63 16 10 Si 0.88 19.55 25.04 -169.99 -4.26 15.29 16 11 H -0.27 -5.82 6.89 56.52 0.39 -5.43 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.26 -5.98 7.10 56.52 0.40 -5.58 16 14 C 0.56 13.34 7.58 -12.78 -0.10 13.24 16 15 O -0.59 -14.93 15.96 5.19 0.08 -14.84 16 16 C -0.20 -4.22 6.18 -103.37 -0.64 -4.85 16 17 C 0.11 2.09 10.15 -16.50 -0.17 1.92 16 18 N -0.59 -8.99 5.97 -10.41 -0.06 -9.05 16 19 H 0.42 4.74 8.96 -40.82 -0.37 4.38 16 20 C 0.11 1.80 7.33 -84.02 -0.62 1.19 16 21 C -0.18 -2.60 10.14 -39.35 -0.40 -3.00 16 22 C 0.08 1.24 11.14 -17.55 -0.20 1.04 16 23 N -0.51 -9.03 10.35 -13.11 -0.14 -9.17 16 24 C 0.16 3.12 11.06 -17.30 -0.19 2.93 16 25 C -0.12 -2.34 6.30 -104.98 -0.66 -3.00 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.38 4.68 -51.93 -0.24 1.14 16 34 H 0.06 1.39 7.55 -51.93 -0.39 1.00 16 35 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.23 4.52 4.58 -52.49 -0.24 4.28 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.16 3.17 7.57 -52.48 -0.40 2.77 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -28.31 322.39 -6.98 -35.30 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.91 Total: 10.34 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.12 Total: -1.04 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.35 Total: -49.90 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.26 Total: 15.29 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.31 -6.98 -35.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152977310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.483 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds