Wall clock time and date at job start Tue Mar 31 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46818 * 2 1 4 4 C 1.53005 * 109.46818 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46912 * 179.97438 * 4 3 2 6 6 C 1.36958 * 120.00202 * 264.66533 * 5 4 3 7 7 H 1.07997 * 120.00004 * 126.54110 * 6 5 4 8 8 C 1.38973 * 120.00013 * 306.54143 * 6 5 4 9 9 N 1.31411 * 120.00248 * 171.99362 * 8 6 5 10 10 Si 1.86800 * 119.99789 * 351.98725 * 8 6 5 11 11 H 1.48506 * 109.47276 * 92.62597 * 10 8 6 12 12 H 1.48506 * 109.47362 * 212.62590 * 10 8 6 13 13 H 1.48504 * 109.47279 * 332.62706 * 10 8 6 14 14 C 1.34779 * 120.00071 * 84.66734 * 5 4 3 15 15 O 1.21698 * 119.99710 * 3.05835 * 14 5 4 16 16 C 1.46846 * 120.00272 * 183.05965 * 14 5 4 17 17 C 1.36481 * 126.78611 * 353.19117 * 16 14 5 18 18 N 1.35641 * 109.76063 * 179.97438 * 17 16 14 19 19 H 0.97001 * 124.78114 * 180.02562 * 18 17 16 20 20 C 1.37361 * 110.44789 * 0.26580 * 18 17 16 21 21 C 1.39349 * 134.36436 * 180.52709 * 20 18 17 22 22 C 1.37749 * 118.88110 * 179.53962 * 21 20 18 23 23 N 1.32248 * 121.45418 * 359.69266 * 22 21 20 24 24 C 1.31783 * 122.14620 * 0.02562 * 23 22 21 25 25 C 1.38980 * 120.16703 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.47048 * 60.00315 * 1 2 3 27 27 H 1.09000 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47185 * 300.00108 * 1 2 3 29 29 H 1.09000 * 109.46828 * 239.99754 * 2 1 3 30 30 H 1.08992 * 109.47091 * 120.00059 * 2 1 3 31 31 H 1.08994 * 109.47330 * 59.99981 * 3 2 1 32 32 H 1.09005 * 109.47054 * 299.99681 * 3 2 1 33 33 H 1.09000 * 109.46828 * 59.99754 * 4 3 2 34 34 H 1.08996 * 109.47255 * 299.99566 * 4 3 2 35 35 H 0.97008 * 120.00114 * 180.02562 * 9 8 6 36 36 H 1.07999 * 125.12438 * 359.97438 * 17 16 14 37 37 H 1.07997 * 120.56054 * 359.24909 * 21 20 18 38 38 H 1.08001 * 119.27782 * 179.71527 * 22 21 20 39 39 H 1.08007 * 119.91636 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3900 3.4323 -1.1825 7 1 3.9518 4.3850 -1.4408 8 6 5.2905 2.8239 -2.0487 9 7 5.4901 3.3247 -3.2472 10 14 6.2174 1.2944 -1.5093 11 1 5.4642 0.0853 -1.9293 12 1 7.5625 1.2830 -2.1385 13 1 6.3622 1.2988 -0.0314 14 6 4.1811 3.4956 1.1606 15 8 3.9397 2.9374 2.2148 16 6 4.6062 4.9012 1.1547 17 6 5.0338 5.6212 0.0770 18 7 5.3394 6.8854 0.4620 19 1 5.6644 7.5810 -0.1308 20 6 5.1288 7.0405 1.8105 21 6 5.2672 8.1020 2.7025 22 6 4.9483 7.9033 4.0278 23 7 4.5108 6.7342 4.4645 24 6 4.3563 5.6995 3.6631 25 6 4.6549 5.8130 2.3106 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 3.9329 0.9287 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 6.1184 2.8997 -3.8520 36 1 5.1165 5.2416 -0.9307 37 1 5.6230 9.0630 2.3615 38 1 5.0575 8.7204 4.7256 39 1 3.9960 4.7612 4.0584 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152977310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:07 Heat of formation + Delta-G solvation = 16.271653 kcal Electronic energy + Delta-G solvation = -22701.406943 eV Core-core repulsion = 19415.872283 eV Total energy + Delta-G solvation = -3285.534661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.58139 -40.44135 -38.90848 -37.16339 -35.69536 -33.84950 -33.11904 -31.60907 -30.86606 -29.31704 -26.97391 -25.26005 -24.54225 -23.28177 -22.95396 -22.07364 -20.62144 -19.81394 -18.53440 -17.67934 -17.36024 -16.85768 -16.34791 -16.12529 -16.03774 -15.87816 -15.50422 -15.23039 -14.83422 -14.68187 -14.38475 -14.20941 -13.86882 -13.68681 -13.58082 -13.30574 -13.03954 -12.87650 -12.46994 -12.12450 -12.05458 -11.86786 -11.78079 -11.40332 -11.09857 -10.81495 -10.59163 -10.49279 -9.82109 -9.51065 -8.80156 -8.49835 -6.31524 -0.06136 0.52281 1.10025 1.23099 1.34822 1.44357 2.07066 2.19437 2.55943 2.67383 2.91509 3.08281 3.63787 3.72364 3.95650 4.05106 4.07672 4.12060 4.26294 4.28502 4.36820 4.57605 4.63644 4.69059 4.76550 4.78929 4.92273 4.94633 4.95563 5.07692 5.17681 5.25426 5.37553 5.44436 5.48542 5.58882 5.62372 5.94844 6.04605 6.24960 6.58700 6.95486 7.14919 7.43713 7.84086 8.58145 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.006034 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.858554 B = 4639.162383 C = 5847.915842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.102 3.898 5 N -0.478 5.478 6 C -0.343 4.343 7 H 0.100 0.900 8 C 0.050 3.950 9 N -0.888 5.888 10 Si 0.915 3.085 11 H -0.258 1.258 12 H -0.282 1.282 13 H -0.279 1.279 14 C 0.554 3.446 15 O -0.621 6.621 16 C -0.240 4.240 17 C 0.132 3.868 18 N -0.564 5.564 19 H 0.438 0.562 20 C 0.107 3.893 21 C -0.163 4.163 22 C 0.082 3.918 23 N -0.520 5.520 24 C 0.138 3.862 25 C -0.146 4.146 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.282 0.718 36 H 0.223 0.777 37 H 0.174 0.826 38 H 0.194 0.806 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 5.566 2.890 6.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.155 4.155 4 C -0.020 4.020 5 N -0.199 5.199 6 C -0.470 4.470 7 H 0.117 0.883 8 C -0.157 4.157 9 N -0.524 5.524 10 Si 0.741 3.259 11 H -0.183 1.183 12 H -0.208 1.208 13 H -0.204 1.204 14 C 0.347 3.653 15 O -0.508 6.508 16 C -0.251 4.251 17 C 0.000 4.000 18 N -0.168 5.168 19 H 0.279 0.721 20 C -0.007 4.007 21 C -0.185 4.185 22 C -0.069 4.069 23 N -0.230 5.230 24 C -0.024 4.024 25 C -0.154 4.154 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.238 0.762 37 H 0.191 0.809 38 H 0.211 0.789 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.328 5.314 3.989 6.776 hybrid contribution 0.872 -0.648 -1.255 1.660 sum -0.455 4.665 2.734 5.427 Atomic orbital electron populations 1.21713 0.94308 1.02373 1.01775 1.21476 0.97206 0.94980 1.02163 1.21767 0.94251 0.98225 1.01261 1.21694 0.95536 0.84487 1.00324 1.43565 1.58708 1.12180 1.05411 1.19010 1.25155 1.07843 0.95026 0.88294 1.25819 0.95808 0.99289 0.94767 1.69677 1.34965 1.41469 1.06267 0.86231 0.79022 0.81809 0.78830 1.18301 1.20808 1.20406 1.17870 0.78159 0.86166 0.83146 1.90583 1.57051 1.70936 1.32218 1.19964 1.17307 0.94501 0.93295 1.24389 0.92057 0.82127 1.01383 1.41766 1.56261 1.12371 1.06435 0.72078 1.18702 1.00764 0.95727 0.85487 1.21419 1.05881 0.98503 0.92710 1.23005 0.95043 0.94861 0.94001 1.67751 1.15891 1.00687 1.38687 1.22158 0.94797 0.97179 0.88259 1.20049 1.05798 0.94466 0.95061 0.92633 0.91054 0.93066 0.91528 0.91904 0.93494 0.92128 0.91626 0.92679 0.90776 0.76156 0.80852 0.78909 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.12 -3.58 5.93 30.59 0.18 -3.40 16 3 C -0.12 -4.39 5.50 30.59 0.17 -4.22 16 4 C 0.10 4.43 3.87 86.38 0.33 4.77 16 5 N -0.48 -22.68 1.94 -639.84 -1.24 -23.92 16 6 C -0.34 -16.30 6.81 84.07 0.57 -15.72 16 7 H 0.10 4.80 6.03 -2.91 -0.02 4.78 16 8 C 0.05 2.38 5.41 84.93 0.46 2.84 16 9 N -0.89 -43.66 13.96 21.67 0.30 -43.36 16 10 Si 0.91 40.20 25.04 68.60 1.72 41.91 16 11 H -0.26 -10.70 6.89 99.48 0.69 -10.01 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -13.22 7.10 99.48 0.71 -12.52 16 14 C 0.55 27.36 7.58 86.49 0.66 28.01 16 15 O -0.62 -33.10 15.96 -4.34 -0.07 -33.17 16 16 C -0.24 -10.55 6.18 -19.05 -0.12 -10.67 16 17 C 0.13 4.93 10.15 83.69 0.85 5.78 16 18 N -0.56 -16.17 5.97 -186.85 -1.12 -17.28 16 19 H 0.44 8.58 8.96 -92.71 -0.83 7.75 16 20 C 0.11 3.37 7.33 39.16 0.29 3.66 16 21 C -0.16 -3.91 10.14 22.42 0.23 -3.68 16 22 C 0.08 2.12 11.14 84.51 0.94 3.06 16 23 N -0.52 -17.88 10.35 -195.38 -2.02 -19.90 16 24 C 0.14 5.48 11.06 84.88 0.94 6.42 16 25 C -0.15 -5.87 6.30 -20.10 -0.13 -6.00 16 26 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.32 8.14 -2.38 -0.02 2.31 16 33 H 0.07 2.81 4.68 -2.39 -0.01 2.79 16 34 H 0.05 2.47 7.55 -2.39 -0.02 2.45 16 35 H 0.28 13.12 8.31 -92.70 -0.77 12.35 16 36 H 0.22 8.75 4.58 -2.91 -0.01 8.74 16 37 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 39 H 0.14 5.99 7.57 -2.91 -0.02 5.97 16 Total: -1.00 -63.12 322.39 3.89 -59.23 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.23 Total: 28.48 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.08 Total: 8.00 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -4.08 Total: -104.46 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.07 Total: -33.17 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.72 Total: 41.91 kcal Total: -63.12 3.89 -59.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152977310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.502 kcal (2) G-P(sol) polarization free energy of solvation -63.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds