Wall clock time and date at job start Tue Mar 31 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47332 * 2 1 4 4 O 1.42900 * 109.47343 * 120.00250 * 2 1 3 5 5 C 1.53002 * 109.47064 * 240.00435 * 2 1 3 6 6 N 1.46504 * 109.47002 * 179.97438 * 5 2 1 7 7 C 1.34689 * 125.80167 * 124.99772 * 6 5 2 8 8 C 1.37974 * 107.37109 * 180.02562 * 7 6 5 9 9 C 1.47852 * 126.37728 * 179.97438 * 8 7 6 10 10 C 1.39344 * 120.78955 * 309.71960 * 9 8 7 11 11 N 1.31658 * 120.65627 * 179.72643 * 10 9 8 12 12 C 1.32226 * 122.50403 * 0.54724 * 11 10 9 13 13 C 1.36440 * 121.51934 * 359.74166 * 12 11 10 14 14 C 1.41136 * 119.11038 * 359.97438 * 13 12 11 15 15 C 1.40898 * 121.10684 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99414 * 154.98635 * 15 14 13 17 17 C 1.40123 * 120.00064 * 334.99530 * 15 14 13 18 18 N 1.30716 * 120.00148 * 344.00067 * 17 15 14 19 19 Si 1.86801 * 120.00072 * 164.00914 * 17 15 14 20 20 H 1.48501 * 109.47560 * 89.99446 * 19 17 15 21 21 H 1.48496 * 109.47200 * 209.99696 * 19 17 15 22 22 H 1.48507 * 109.46878 * 329.99411 * 19 17 15 23 23 C 1.41148 * 107.23928 * 359.97438 * 8 7 6 24 24 N 1.30533 * 108.11326 * 359.72071 * 23 8 7 25 25 H 1.08998 * 109.47056 * 59.99899 * 1 2 3 26 26 H 1.08999 * 109.46820 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46800 * 299.99659 * 1 2 3 28 28 H 1.09004 * 109.46656 * 59.99935 * 3 2 1 29 29 H 1.08997 * 109.47558 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47329 * 300.00720 * 3 2 1 31 31 H 0.96704 * 114.00201 * 59.99882 * 4 2 1 32 32 H 1.09002 * 109.46881 * 299.99428 * 5 2 1 33 33 H 1.08998 * 109.47458 * 59.99911 * 5 2 1 34 34 H 1.07997 * 126.31229 * 359.97438 * 7 6 5 35 35 H 1.08004 * 119.67320 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.24362 * 179.72202 * 12 11 10 37 37 H 1.07998 * 120.44434 * 179.97438 * 13 12 11 38 38 H 0.97000 * 120.00530 * 180.02562 * 18 17 15 39 39 H 1.07998 * 125.94016 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5051 -0.7206 -1.2496 7 6 4.2934 -1.8086 -1.3449 8 6 5.6022 -1.3736 -1.3066 9 6 6.8107 -2.2221 -1.3802 10 6 6.9529 -3.3343 -0.5530 11 7 8.0278 -4.0911 -0.6245 12 6 9.0201 -3.8388 -1.4612 13 6 8.9832 -2.7714 -2.3103 14 6 7.8584 -1.9190 -2.2932 15 6 7.7765 -0.8046 -3.1514 16 1 6.8115 -0.4088 -3.4317 17 6 8.9469 -0.2101 -3.6413 18 7 10.0972 -0.4694 -3.0773 19 14 8.8634 0.9533 -5.1004 20 1 8.6574 2.3417 -4.6155 21 1 10.1339 0.8797 -5.8656 22 1 7.7324 0.5634 -5.9803 23 6 5.5723 0.0322 -1.1840 24 7 4.3234 0.4109 -1.1574 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.7211 -1.5953 1.2329 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1393 34 1 3.9620 -2.8326 -1.4339 35 1 6.1718 -3.5803 0.1512 36 1 9.8798 -4.4925 -1.4727 37 1 9.8036 -2.5813 -2.9864 38 1 10.9075 -0.0576 -3.4161 39 1 6.4331 0.6820 -1.1275 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240197757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:00 Heat of formation + Delta-G solvation = 49.407457 kcal Electronic energy + Delta-G solvation = -22415.267859 eV Core-core repulsion = 19131.170074 eV Total energy + Delta-G solvation = -3284.097784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52841 -38.36643 -37.87556 -34.14547 -33.36163 -31.73127 -31.01702 -30.09417 -28.15765 -27.30185 -26.14333 -25.60223 -22.01406 -21.45806 -20.83396 -19.94368 -19.37725 -17.57884 -17.05947 -16.01132 -15.54925 -15.46039 -14.98541 -14.46848 -14.30772 -13.89652 -13.67556 -13.39576 -12.70194 -12.63238 -12.58305 -12.33681 -12.23991 -12.15498 -12.03618 -11.77678 -11.73250 -11.42407 -11.21290 -10.97835 -10.81512 -10.41913 -10.26055 -9.91338 -9.66367 -9.42910 -8.66590 -8.33114 -7.92856 -7.73986 -7.09669 -6.77899 -4.54140 2.37120 2.76065 2.83877 2.96578 3.02408 3.07088 3.26903 3.78672 3.85428 4.13639 4.38137 4.65594 4.67562 4.81999 5.03296 5.29696 5.37229 5.45895 5.59678 5.68967 5.74040 5.76998 5.89178 5.94592 6.01813 6.28525 6.42651 6.52879 6.63300 6.71936 6.95599 6.98461 7.22366 7.37824 7.44757 7.54676 7.60793 7.65400 7.92090 8.14859 8.42973 8.49091 8.74758 8.80139 9.68517 10.04584 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.005047 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.921260 B = 5546.036199 C = 6826.782796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.117 3.883 3 C -0.152 4.152 4 O -0.548 6.548 5 C 0.114 3.886 6 N -0.371 5.371 7 C 0.025 3.975 8 C -0.122 4.122 9 C -0.186 4.186 10 C 0.119 3.881 11 N -0.580 5.580 12 C 0.078 3.922 13 C -0.209 4.209 14 C 0.142 3.858 15 C -0.440 4.440 16 H 0.084 0.916 17 C 0.078 3.922 18 N -0.782 5.782 19 Si 0.907 3.093 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.260 1.260 23 C 0.071 3.929 24 N -0.309 5.309 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.370 0.630 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.283 0.717 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 1.522 1.079 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.076 3.924 3 C -0.209 4.209 4 O -0.353 6.353 5 C -0.009 4.009 6 N -0.154 5.154 7 C -0.119 4.119 8 C -0.133 4.133 9 C -0.193 4.193 10 C -0.039 4.039 11 N -0.294 5.294 12 C -0.071 4.071 13 C -0.232 4.232 14 C 0.134 3.866 15 C -0.470 4.470 16 H 0.102 0.898 17 C -0.142 4.142 18 N -0.406 5.406 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.114 4.114 24 N -0.130 5.130 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.217 0.783 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.180 0.820 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.095 0.905 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.350 2.394 1.791 14.658 hybrid contribution 0.251 -0.007 -1.492 1.513 sum -14.099 2.386 0.299 14.303 Atomic orbital electron populations 1.22466 0.95248 1.02443 1.03293 1.21532 0.92166 0.94486 0.84231 1.22051 1.06244 0.91602 1.01015 1.86690 1.77195 1.28297 1.43139 1.22287 0.76799 1.02074 0.99747 1.47820 1.04746 1.04425 1.58392 1.22727 0.91013 0.92389 1.05797 1.18942 0.91334 0.92632 1.10417 1.18903 0.96849 1.00315 1.03184 1.22047 0.94536 0.91209 0.96079 1.67285 1.03057 1.32926 1.26151 1.21660 0.95705 0.96085 0.93626 1.21878 1.01561 0.96334 1.03396 1.17744 0.89501 0.91031 0.88321 1.19518 0.93569 1.10641 1.23290 0.89782 1.25996 0.94777 0.96769 0.96632 1.69763 0.99770 1.35935 1.35178 0.86319 0.78911 0.80418 0.81260 1.19212 1.20002 1.18423 1.24061 0.94069 0.95406 0.97882 1.76761 1.02011 1.08068 1.26190 0.91342 0.92294 0.91258 0.92937 0.87662 0.91783 0.78330 0.89185 0.89741 0.82012 0.86491 0.86689 0.85842 0.90548 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.82 37.16 0.33 -1.05 16 2 C 0.12 1.30 1.17 -90.62 -0.11 1.19 16 3 C -0.15 -1.96 8.42 37.16 0.31 -1.65 16 4 O -0.55 -6.95 12.84 -35.23 -0.45 -7.40 16 5 C 0.11 1.30 5.67 -4.04 -0.02 1.28 16 6 N -0.37 -6.01 3.53 -60.72 -0.21 -6.22 16 7 C 0.03 0.44 11.41 -16.39 -0.19 0.25 16 8 C -0.12 -2.55 5.04 -104.96 -0.53 -3.08 16 9 C -0.19 -4.41 5.84 -104.02 -0.61 -5.01 16 10 C 0.12 2.75 10.90 -17.21 -0.19 2.56 16 11 N -0.58 -14.12 10.32 -13.36 -0.14 -14.26 16 12 C 0.08 1.87 11.08 -18.03 -0.20 1.67 16 13 C -0.21 -5.32 8.72 -39.13 -0.34 -5.66 16 14 C 0.14 3.64 5.61 -106.26 -0.60 3.04 16 15 C -0.44 -11.01 7.94 -37.87 -0.30 -11.31 16 16 H 0.08 2.10 6.76 -52.49 -0.35 1.74 16 17 C 0.08 1.87 5.21 -17.32 -0.09 1.78 16 18 N -0.78 -19.19 10.94 55.56 0.61 -18.59 16 19 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 C 0.07 1.47 10.46 -17.00 -0.18 1.29 16 24 N -0.31 -5.81 9.26 30.84 0.29 -5.52 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.11 1.71 5.18 -51.93 -0.27 1.44 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.37 3.22 9.05 45.56 0.41 3.63 16 32 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 36 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 37 H 0.12 3.18 6.25 -52.49 -0.33 2.85 16 38 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 39 H 0.18 3.73 8.00 -52.49 -0.42 3.31 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -29.92 328.71 -7.01 -36.93 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -4.32 Total: 11.75 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -2.71 Total: -14.69 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.54 Total: -44.59 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.45 Total: -7.40 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.92 -7.01 -36.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240197757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.334 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds