Wall clock time and date at job start Tue Mar 31 2020 06:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47332 * 2 1 4 4 O 1.42900 * 109.47343 * 120.00250 * 2 1 3 5 5 C 1.53002 * 109.47064 * 240.00435 * 2 1 3 6 6 N 1.46504 * 109.47002 * 179.97438 * 5 2 1 7 7 C 1.34689 * 125.80167 * 124.99772 * 6 5 2 8 8 C 1.37974 * 107.37109 * 180.02562 * 7 6 5 9 9 C 1.47852 * 126.37728 * 179.97438 * 8 7 6 10 10 C 1.39344 * 120.78955 * 309.71960 * 9 8 7 11 11 N 1.31658 * 120.65627 * 179.72643 * 10 9 8 12 12 C 1.32226 * 122.50403 * 0.54724 * 11 10 9 13 13 C 1.36440 * 121.51934 * 359.74166 * 12 11 10 14 14 C 1.41136 * 119.11038 * 359.97438 * 13 12 11 15 15 C 1.40898 * 121.10684 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99414 * 154.98635 * 15 14 13 17 17 C 1.40123 * 120.00064 * 334.99530 * 15 14 13 18 18 N 1.30716 * 120.00148 * 344.00067 * 17 15 14 19 19 Si 1.86801 * 120.00072 * 164.00914 * 17 15 14 20 20 H 1.48501 * 109.47560 * 89.99446 * 19 17 15 21 21 H 1.48496 * 109.47200 * 209.99696 * 19 17 15 22 22 H 1.48507 * 109.46878 * 329.99411 * 19 17 15 23 23 C 1.41148 * 107.23928 * 359.97438 * 8 7 6 24 24 N 1.30533 * 108.11326 * 359.72071 * 23 8 7 25 25 H 1.08998 * 109.47056 * 59.99899 * 1 2 3 26 26 H 1.08999 * 109.46820 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46800 * 299.99659 * 1 2 3 28 28 H 1.09004 * 109.46656 * 59.99935 * 3 2 1 29 29 H 1.08997 * 109.47558 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47329 * 300.00720 * 3 2 1 31 31 H 0.96704 * 114.00201 * 59.99882 * 4 2 1 32 32 H 1.09002 * 109.46881 * 299.99428 * 5 2 1 33 33 H 1.08998 * 109.47458 * 59.99911 * 5 2 1 34 34 H 1.07997 * 126.31229 * 359.97438 * 7 6 5 35 35 H 1.08004 * 119.67320 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.24362 * 179.72202 * 12 11 10 37 37 H 1.07998 * 120.44434 * 179.97438 * 13 12 11 38 38 H 0.97000 * 120.00530 * 180.02562 * 18 17 15 39 39 H 1.07998 * 125.94016 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5051 -0.7206 -1.2496 7 6 4.2934 -1.8086 -1.3449 8 6 5.6022 -1.3736 -1.3066 9 6 6.8107 -2.2221 -1.3802 10 6 6.9529 -3.3343 -0.5530 11 7 8.0278 -4.0911 -0.6245 12 6 9.0201 -3.8388 -1.4612 13 6 8.9832 -2.7714 -2.3103 14 6 7.8584 -1.9190 -2.2932 15 6 7.7765 -0.8046 -3.1514 16 1 6.8115 -0.4088 -3.4317 17 6 8.9469 -0.2101 -3.6413 18 7 10.0972 -0.4694 -3.0773 19 14 8.8634 0.9533 -5.1004 20 1 8.6574 2.3417 -4.6155 21 1 10.1339 0.8797 -5.8656 22 1 7.7324 0.5634 -5.9803 23 6 5.5723 0.0322 -1.1840 24 7 4.3234 0.4109 -1.1574 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.7211 -1.5953 1.2329 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1393 34 1 3.9620 -2.8326 -1.4339 35 1 6.1718 -3.5803 0.1512 36 1 9.8798 -4.4925 -1.4727 37 1 9.8036 -2.5813 -2.9864 38 1 10.9075 -0.0576 -3.4161 39 1 6.4331 0.6820 -1.1275 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240197757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:59 Heat of formation + Delta-G solvation = 29.883076 kcal Electronic energy + Delta-G solvation = -22416.114499 eV Core-core repulsion = 19131.170074 eV Total energy + Delta-G solvation = -3284.944425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91739 -39.96138 -39.04202 -35.97658 -34.49351 -33.13712 -32.39472 -31.91265 -29.62161 -28.22033 -27.75298 -26.98799 -23.70710 -23.25218 -21.97082 -21.17883 -20.87308 -19.40317 -18.26483 -17.35946 -17.05703 -16.50138 -16.29427 -16.06502 -15.92593 -15.32530 -15.04969 -14.64786 -14.37078 -14.09500 -13.98736 -13.63035 -13.41700 -13.29017 -13.15872 -13.05469 -12.97748 -12.82436 -12.72379 -12.64862 -11.99221 -11.72331 -11.69915 -11.35283 -11.21521 -11.02912 -10.08483 -9.98140 -9.81017 -9.57367 -8.80902 -8.50681 -6.42668 0.74591 1.04680 1.20273 1.38153 1.49316 1.57042 1.76594 2.17304 2.18565 2.81678 3.34095 3.48419 3.78396 3.83431 4.04272 4.07652 4.13280 4.24500 4.44352 4.46896 4.54867 4.74644 4.87184 4.89870 4.93225 4.97561 4.99982 5.09593 5.16697 5.19176 5.26540 5.39597 5.51323 5.57751 5.68031 5.92757 6.06004 6.28016 6.35936 6.61453 6.87502 6.88240 6.92016 6.98407 7.81300 8.26867 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.005047 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.921260 B = 5546.036199 C = 6826.782796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 C -0.156 4.156 4 O -0.575 6.575 5 C 0.100 3.900 6 N -0.356 5.356 7 C 0.049 3.951 8 C -0.163 4.163 9 C -0.183 4.183 10 C 0.109 3.891 11 N -0.590 5.590 12 C 0.072 3.928 13 C -0.231 4.231 14 C 0.112 3.888 15 C -0.457 4.457 16 H 0.077 0.923 17 C 0.042 3.958 18 N -0.810 5.810 19 Si 0.974 3.026 20 H -0.263 1.263 21 H -0.264 1.264 22 H -0.262 1.262 23 C 0.050 3.950 24 N -0.313 5.313 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.387 0.613 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.198 0.802 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.291 0.709 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.820 1.137 0.590 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.078 3.922 3 C -0.213 4.213 4 O -0.383 6.383 5 C -0.021 4.021 6 N -0.138 5.138 7 C -0.098 4.098 8 C -0.175 4.175 9 C -0.189 4.189 10 C -0.047 4.047 11 N -0.305 5.305 12 C -0.077 4.077 13 C -0.253 4.253 14 C 0.104 3.896 15 C -0.488 4.488 16 H 0.095 0.905 17 C -0.175 4.175 18 N -0.436 5.436 19 Si 0.796 3.204 20 H -0.188 1.188 21 H -0.188 1.188 22 H -0.186 1.186 23 C -0.135 4.135 24 N -0.135 5.135 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.236 0.764 32 H 0.148 0.852 33 H 0.118 0.882 34 H 0.215 0.785 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.150 2.014 1.322 17.318 hybrid contribution 0.958 0.114 -1.250 1.579 sum -16.191 2.128 0.072 16.331 Atomic orbital electron populations 1.22369 0.92147 1.04179 1.03759 1.21537 0.94259 0.92849 0.83528 1.22049 1.03912 0.93744 1.01637 1.86657 1.77924 1.29865 1.43837 1.22856 0.73575 1.05003 1.00626 1.48249 1.06501 1.03306 1.55706 1.23107 0.89841 0.93955 1.02883 1.18922 0.92034 0.92533 1.14055 1.19162 0.97333 1.00422 1.02021 1.22465 0.94857 0.91043 0.96325 1.67349 1.03470 1.33420 1.26217 1.21962 0.96437 0.96051 0.93217 1.21868 1.01742 0.97384 1.04348 1.18139 0.90513 0.91642 0.89266 1.19591 0.93828 1.11103 1.24240 0.90467 1.26735 0.94076 0.98040 0.98678 1.69803 1.00498 1.36963 1.36327 0.85309 0.79068 0.78251 0.77822 1.18806 1.18806 1.18617 1.23852 0.94518 0.95418 0.99677 1.76796 1.01463 1.09228 1.26040 0.90089 0.89947 0.91624 0.92944 0.91144 0.90666 0.76366 0.85208 0.88206 0.78546 0.83804 0.84532 0.86993 0.89767 0.82092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.82 71.98 0.63 -1.28 16 2 C 0.12 2.27 1.17 -10.79 -0.01 2.26 16 3 C -0.16 -3.81 8.42 71.98 0.61 -3.21 16 4 O -0.57 -13.07 12.84 -148.98 -1.91 -14.98 16 5 C 0.10 1.88 5.67 86.38 0.49 2.37 16 6 N -0.36 -10.69 3.53 -346.01 -1.22 -11.91 16 7 C 0.05 1.60 11.41 84.19 0.96 2.56 16 8 C -0.16 -6.86 5.04 -20.08 -0.10 -6.97 16 9 C -0.18 -8.79 5.84 -19.47 -0.11 -8.90 16 10 C 0.11 5.02 10.90 84.99 0.93 5.95 16 11 N -0.59 -28.61 10.32 -196.19 -2.02 -30.64 16 12 C 0.07 3.53 11.08 84.21 0.93 4.47 16 13 C -0.23 -12.09 8.72 22.56 0.20 -11.90 16 14 C 0.11 5.94 5.61 -20.93 -0.12 5.82 16 15 C -0.46 -23.66 7.94 23.38 0.19 -23.47 16 16 H 0.08 3.99 6.76 -2.91 -0.02 3.97 16 17 C 0.04 2.06 5.21 85.32 0.44 2.50 16 18 N -0.81 -40.89 10.94 21.86 0.24 -40.65 16 19 Si 0.97 37.50 29.59 68.60 2.03 39.53 16 20 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 21 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 23 C 0.05 2.10 10.46 85.60 0.90 3.00 16 24 N -0.31 -11.69 9.26 -56.33 -0.52 -12.21 16 25 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 2.26 5.18 -2.39 -0.01 2.25 16 30 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.39 5.40 9.05 -74.05 -0.67 4.73 16 32 H 0.13 1.48 8.06 -2.39 -0.02 1.46 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.20 4.95 8.06 -2.91 -0.02 4.93 16 35 H 0.14 5.67 8.06 -2.91 -0.02 5.64 16 36 H 0.14 5.86 8.06 -2.91 -0.02 5.84 16 37 H 0.11 6.01 6.25 -2.91 -0.02 5.99 16 38 H 0.29 13.27 8.29 -92.71 -0.77 12.50 16 39 H 0.16 7.19 8.00 -2.91 -0.02 7.17 16 Total: -1.00 -66.95 328.71 2.92 -64.03 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.40 Total: 33.62 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 5.93 Total: -26.79 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -3.53 Total: -95.41 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.91 Total: -14.98 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -66.95 2.92 -64.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240197757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.914 kcal (2) G-P(sol) polarization free energy of solvation -66.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds