Wall clock time and date at job start Tue Mar 31 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 110.05585 * 2 1 4 4 C 1.54269 * 110.03427 * 238.58351 * 2 1 3 5 5 C 1.54885 * 104.19623 * 217.10558 * 4 2 1 6 6 C 1.54892 * 102.75087 * 37.94359 * 5 4 2 7 7 C 1.53878 * 110.03271 * 121.41756 * 2 1 3 8 8 H 1.09000 * 110.03317 * 238.56502 * 7 2 1 9 9 N 1.46499 * 110.03380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00248 * 203.62000 * 9 7 2 11 11 O 1.21555 * 119.99650 * 0.02562 * 10 9 7 12 12 C 1.47879 * 120.00344 * 180.02562 * 10 9 7 13 13 C 1.39930 * 120.02348 * 0.02562 * 12 10 9 14 14 C 1.38327 * 120.35728 * 179.97438 * 13 12 10 15 15 C 1.37753 * 120.41460 * 0.02562 * 14 13 12 16 16 C 1.40753 * 120.03787 * 359.96896 * 15 14 13 17 17 C 1.41431 * 120.17654 * 180.02562 * 16 15 14 18 18 H 1.08009 * 120.00331 * 24.36264 * 17 16 15 19 19 C 1.39938 * 120.00065 * 204.36797 * 17 16 15 20 20 N 1.30830 * 120.00032 * 17.75154 * 19 17 16 21 21 Si 1.86801 * 120.00192 * 197.74797 * 19 17 16 22 22 H 1.48502 * 109.46879 * 59.99945 * 21 19 17 23 23 H 1.48499 * 109.47299 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47369 * 300.00407 * 21 19 17 25 25 C 1.38996 * 120.02976 * 179.72448 * 12 10 9 26 26 H 1.09001 * 109.47073 * 298.57976 * 1 2 3 27 27 H 1.08992 * 109.47470 * 58.58592 * 1 2 3 28 28 H 1.09003 * 109.47284 * 178.58844 * 1 2 3 29 29 H 1.09002 * 109.46878 * 181.41806 * 3 2 1 30 30 H 1.08998 * 109.47280 * 301.41587 * 3 2 1 31 31 H 1.08995 * 109.47158 * 61.41997 * 3 2 1 32 32 H 1.08997 * 110.48436 * 98.42038 * 4 2 1 33 33 H 1.09006 * 110.48398 * 335.78609 * 4 2 1 34 34 H 1.09001 * 110.75869 * 279.62325 * 5 4 2 35 35 H 1.09000 * 110.75465 * 156.25829 * 5 4 2 36 36 H 1.08999 * 110.48372 * 203.38199 * 6 5 4 37 37 H 1.08995 * 110.48836 * 80.73427 * 6 5 4 38 38 H 0.97000 * 119.99513 * 23.62593 * 9 7 2 39 39 H 1.08002 * 119.82043 * 359.97438 * 13 12 10 40 40 H 1.08003 * 119.78954 * 180.02562 * 14 13 12 41 41 H 1.07996 * 119.98394 * 179.97438 * 15 14 13 42 42 H 0.97003 * 120.00003 * 180.02562 * 20 19 17 43 43 H 1.07996 * 120.19617 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5007 -0.7191 6 6 2.8874 -1.9407 0.7035 7 6 2.0571 -0.7536 1.2337 8 1 2.6867 -0.0954 1.8324 9 7 0.9359 -1.2446 2.0388 10 6 1.1087 -1.4981 3.3511 11 8 2.1947 -1.3189 3.8669 12 6 -0.0229 -1.9943 4.1637 13 6 -1.2731 -2.2013 3.5703 14 6 -2.3362 -2.6658 4.3238 15 6 -2.1769 -2.9294 5.6664 16 6 -0.9267 -2.7273 6.2806 17 6 -0.7597 -2.9974 7.6588 18 1 -1.4133 -3.7001 8.1545 19 6 0.2522 -2.3543 8.3804 20 7 0.8107 -1.2725 7.9014 21 14 0.8055 -3.0403 10.0274 22 1 1.3198 -4.4209 9.8409 23 1 1.8822 -2.1826 10.5844 24 1 -0.3451 -3.0633 10.9659 25 6 0.1562 -2.2614 5.5159 26 1 -0.3633 0.4916 0.9025 27 1 -0.3634 0.5356 -0.8769 28 1 -0.3634 -1.0274 -0.0253 29 1 3.1443 1.4262 -0.0254 30 1 1.6761 1.9622 -0.8770 31 1 1.7174 1.9471 0.9024 32 1 2.3296 -0.0536 -2.0255 33 1 1.3142 -1.4660 -1.5967 34 1 4.1710 -0.8291 -0.6752 35 1 3.5325 -2.3678 -1.3423 36 1 3.7637 -2.1037 1.3309 37 1 2.2771 -2.8426 0.6571 38 1 0.0692 -1.3873 1.6272 39 1 -1.4088 -1.9974 2.5185 40 1 -3.2971 -2.8227 3.8563 41 1 -3.0117 -3.2914 6.2481 42 1 1.5125 -0.8269 8.4014 43 1 1.1208 -2.1080 5.9768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174946423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:21 Heat of formation + Delta-G solvation = -36.935073 kcal Electronic energy + Delta-G solvation = -22827.770231 eV Core-core repulsion = 19643.468697 eV Total energy + Delta-G solvation = -3184.301534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08656 -38.28003 -36.80285 -33.80948 -33.21694 -32.27397 -30.20992 -29.42086 -27.73789 -27.19896 -25.30432 -24.48419 -22.40755 -20.95439 -20.70031 -19.43465 -18.76103 -17.67122 -16.29176 -15.90500 -15.21208 -14.97403 -14.80747 -14.56860 -14.05929 -13.73440 -13.49140 -13.22025 -13.11336 -12.90848 -12.60561 -12.42440 -12.21348 -11.98725 -11.65998 -11.48080 -11.16770 -11.09227 -11.07239 -10.83733 -10.73704 -10.62829 -10.61019 -10.51574 -10.43550 -9.99461 -9.68017 -9.19818 -8.95170 -8.53882 -7.60919 -7.50924 -6.78987 -4.40485 2.24350 2.83415 3.08120 3.09886 3.17612 3.77145 3.89657 3.93416 4.39850 4.53847 4.67617 4.74056 5.16050 5.24221 5.28850 5.32436 5.53057 5.57175 5.60426 5.64398 5.68650 5.78871 5.79594 5.85767 5.90015 5.99855 6.05332 6.08806 6.18142 6.28042 6.28434 6.30461 6.40588 6.73817 6.97535 7.01439 7.07193 7.22817 7.39751 7.71887 7.78662 7.94477 8.14362 8.22591 8.52035 8.81366 8.84977 9.02881 10.15707 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.024090 B = 0.004025 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.017946 B = 6954.345132 C = 7556.200816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.135 4.135 7 C 0.150 3.850 8 H 0.088 0.912 9 N -0.732 5.732 10 C 0.562 3.438 11 O -0.547 6.547 12 C -0.127 4.127 13 C -0.219 4.219 14 C -0.097 4.097 15 C -0.213 4.213 16 C 0.100 3.900 17 C -0.461 4.461 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.783 5.783 21 Si 0.910 3.090 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.093 4.093 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.285 0.715 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 2.218 -14.758 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.195 4.195 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.174 4.174 7 C 0.045 3.955 8 H 0.106 0.894 9 N -0.388 5.388 10 C 0.352 3.648 11 O -0.426 6.426 12 C -0.131 4.131 13 C -0.239 4.239 14 C -0.116 4.116 15 C -0.233 4.233 16 C 0.097 3.903 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.407 5.407 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.113 4.113 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.239 0.761 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.650 2.556 -14.312 14.778 hybrid contribution -0.220 -0.254 0.543 0.638 sum 2.430 2.302 -13.769 14.170 Atomic orbital electron populations 1.21915 0.94407 1.01718 1.02377 1.21404 0.95894 0.95736 0.94658 1.21884 1.00977 0.94719 1.01886 1.22479 0.97454 0.98739 0.96470 1.22453 0.97593 0.99797 0.96263 1.22809 1.00248 0.98530 0.95827 1.21555 0.88185 0.94856 0.90922 0.89388 1.46350 1.13916 1.69039 1.09490 1.18875 0.88590 0.76124 0.81179 1.90682 1.27234 1.52638 1.72011 1.19502 0.92551 1.06067 0.94936 1.20326 0.93739 1.12417 0.97432 1.20426 0.96631 1.00084 0.94427 1.21091 0.96783 1.10843 0.94595 1.17593 0.90056 0.89367 0.93285 1.19563 1.13470 1.22230 0.93732 0.90124 1.25962 0.94895 0.93416 1.00270 1.69787 1.19858 1.12754 1.38329 0.86329 0.78999 0.80114 0.81101 1.18719 1.20218 1.18963 1.21638 1.00015 0.99358 0.90301 0.91667 0.92297 0.92353 0.92418 0.92546 0.92342 0.91543 0.91428 0.91482 0.91593 0.91181 0.91191 0.76096 0.89428 0.88955 0.88653 0.90388 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 7.04 37.15 0.26 -1.29 16 2 C -0.08 -0.84 0.94 -153.39 -0.14 -0.99 16 3 C -0.14 -1.40 8.15 37.16 0.30 -1.10 16 4 C -0.11 -1.07 5.90 -25.07 -0.15 -1.22 16 5 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 6 C -0.14 -1.81 6.53 -25.07 -0.16 -1.97 16 7 C 0.15 2.18 2.86 -66.81 -0.19 1.99 16 8 H 0.09 1.47 7.14 -51.93 -0.37 1.09 16 9 N -0.73 -12.41 4.46 -53.65 -0.24 -12.65 16 10 C 0.56 12.49 7.76 -12.32 -0.10 12.39 16 11 O -0.55 -13.91 16.01 5.32 0.09 -13.82 16 12 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 13 C -0.22 -4.65 9.55 -38.92 -0.37 -5.03 16 14 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 15 C -0.21 -5.10 9.78 -38.81 -0.38 -5.48 16 16 C 0.10 2.66 5.57 -106.87 -0.60 2.06 16 17 C -0.46 -12.21 9.05 -37.73 -0.34 -12.55 16 18 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 19 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 20 N -0.78 -20.94 10.96 55.55 0.61 -20.33 16 21 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 C -0.09 -2.51 8.24 -38.44 -0.32 -2.83 16 26 H 0.06 0.78 7.70 -51.93 -0.40 0.38 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.60 6.92 -51.93 -0.36 0.24 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.54 7.84 -51.93 -0.41 0.14 16 33 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 38 H 0.40 6.01 3.78 -40.82 -0.15 5.85 16 39 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 40 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 41 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.28 7.02 8.30 -40.82 -0.34 6.69 16 43 H 0.13 3.89 5.75 -52.49 -0.30 3.59 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -29.36 342.34 -9.38 -38.74 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.51 Total: 10.80 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -3.46 Total: -21.79 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.37 Total: -32.98 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.36 -9.38 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174946423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.809 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds