Wall clock time and date at job start Tue Mar 31 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 110.05585 * 2 1 4 4 C 1.54269 * 110.03427 * 238.58351 * 2 1 3 5 5 C 1.54885 * 104.19623 * 217.10558 * 4 2 1 6 6 C 1.54892 * 102.75087 * 37.94359 * 5 4 2 7 7 C 1.53878 * 110.03271 * 121.41756 * 2 1 3 8 8 H 1.09000 * 110.03317 * 238.56502 * 7 2 1 9 9 N 1.46499 * 110.03380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00248 * 203.62000 * 9 7 2 11 11 O 1.21555 * 119.99650 * 0.02562 * 10 9 7 12 12 C 1.47879 * 120.00344 * 180.02562 * 10 9 7 13 13 C 1.39930 * 120.02348 * 0.02562 * 12 10 9 14 14 C 1.38327 * 120.35728 * 179.97438 * 13 12 10 15 15 C 1.37753 * 120.41460 * 0.02562 * 14 13 12 16 16 C 1.40753 * 120.03787 * 359.96896 * 15 14 13 17 17 C 1.41431 * 120.17654 * 180.02562 * 16 15 14 18 18 H 1.08009 * 120.00331 * 24.36264 * 17 16 15 19 19 C 1.39938 * 120.00065 * 204.36797 * 17 16 15 20 20 N 1.30830 * 120.00032 * 17.75154 * 19 17 16 21 21 Si 1.86801 * 120.00192 * 197.74797 * 19 17 16 22 22 H 1.48502 * 109.46879 * 59.99945 * 21 19 17 23 23 H 1.48499 * 109.47299 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47369 * 300.00407 * 21 19 17 25 25 C 1.38996 * 120.02976 * 179.72448 * 12 10 9 26 26 H 1.09001 * 109.47073 * 298.57976 * 1 2 3 27 27 H 1.08992 * 109.47470 * 58.58592 * 1 2 3 28 28 H 1.09003 * 109.47284 * 178.58844 * 1 2 3 29 29 H 1.09002 * 109.46878 * 181.41806 * 3 2 1 30 30 H 1.08998 * 109.47280 * 301.41587 * 3 2 1 31 31 H 1.08995 * 109.47158 * 61.41997 * 3 2 1 32 32 H 1.08997 * 110.48436 * 98.42038 * 4 2 1 33 33 H 1.09006 * 110.48398 * 335.78609 * 4 2 1 34 34 H 1.09001 * 110.75869 * 279.62325 * 5 4 2 35 35 H 1.09000 * 110.75465 * 156.25829 * 5 4 2 36 36 H 1.08999 * 110.48372 * 203.38199 * 6 5 4 37 37 H 1.08995 * 110.48836 * 80.73427 * 6 5 4 38 38 H 0.97000 * 119.99513 * 23.62593 * 9 7 2 39 39 H 1.08002 * 119.82043 * 359.97438 * 13 12 10 40 40 H 1.08003 * 119.78954 * 180.02562 * 14 13 12 41 41 H 1.07996 * 119.98394 * 179.97438 * 15 14 13 42 42 H 0.97003 * 120.00003 * 180.02562 * 20 19 17 43 43 H 1.07996 * 120.19617 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5007 -0.7191 6 6 2.8874 -1.9407 0.7035 7 6 2.0571 -0.7536 1.2337 8 1 2.6867 -0.0954 1.8324 9 7 0.9359 -1.2446 2.0388 10 6 1.1087 -1.4981 3.3511 11 8 2.1947 -1.3189 3.8669 12 6 -0.0229 -1.9943 4.1637 13 6 -1.2731 -2.2013 3.5703 14 6 -2.3362 -2.6658 4.3238 15 6 -2.1769 -2.9294 5.6664 16 6 -0.9267 -2.7273 6.2806 17 6 -0.7597 -2.9974 7.6588 18 1 -1.4133 -3.7001 8.1545 19 6 0.2522 -2.3543 8.3804 20 7 0.8107 -1.2725 7.9014 21 14 0.8055 -3.0403 10.0274 22 1 1.3198 -4.4209 9.8409 23 1 1.8822 -2.1826 10.5844 24 1 -0.3451 -3.0633 10.9659 25 6 0.1562 -2.2614 5.5159 26 1 -0.3633 0.4916 0.9025 27 1 -0.3634 0.5356 -0.8769 28 1 -0.3634 -1.0274 -0.0253 29 1 3.1443 1.4262 -0.0254 30 1 1.6761 1.9622 -0.8770 31 1 1.7174 1.9471 0.9024 32 1 2.3296 -0.0536 -2.0255 33 1 1.3142 -1.4660 -1.5967 34 1 4.1710 -0.8291 -0.6752 35 1 3.5325 -2.3678 -1.3423 36 1 3.7637 -2.1037 1.3309 37 1 2.2771 -2.8426 0.6571 38 1 0.0692 -1.3873 1.6272 39 1 -1.4088 -1.9974 2.5185 40 1 -3.2971 -2.8227 3.8563 41 1 -3.0117 -3.2914 6.2481 42 1 1.5125 -0.8269 8.4014 43 1 1.1208 -2.1080 5.9768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174946423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:20 Heat of formation + Delta-G solvation = -52.623962 kcal Electronic energy + Delta-G solvation = -22828.450552 eV Core-core repulsion = 19643.468697 eV Total energy + Delta-G solvation = -3184.981855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43768 -39.77824 -38.58693 -35.66682 -34.74931 -33.18738 -32.01697 -31.28794 -28.76788 -28.21266 -27.16758 -25.54436 -24.03053 -22.80550 -21.79907 -21.05950 -19.97766 -19.33045 -17.91336 -17.35728 -16.86213 -16.46090 -16.01659 -16.01357 -15.72541 -15.15864 -15.02367 -14.54370 -14.43352 -14.30186 -13.96305 -13.67731 -13.51395 -13.14939 -12.98842 -12.93373 -12.81506 -12.53905 -12.43944 -12.21812 -11.99014 -11.90408 -11.82922 -11.58538 -11.50846 -11.43718 -11.35557 -11.07847 -10.75863 -10.05739 -9.47690 -9.39944 -8.67882 -6.39819 0.37543 1.00022 1.35010 1.47028 1.49675 2.10100 2.18415 2.29394 2.77810 3.44338 3.62972 3.70419 3.85515 4.03561 4.30838 4.33999 4.35498 4.38557 4.42850 4.53057 4.57340 4.75158 4.79415 4.85180 4.88862 4.96969 4.97944 5.04031 5.07254 5.13817 5.17758 5.18792 5.29155 5.30547 5.35599 5.38738 5.49804 5.50362 5.64250 5.85490 5.91714 6.03948 6.27415 6.51113 6.69640 6.86313 6.93577 7.33975 8.28786 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.024090 B = 0.004025 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.017946 B = 6954.345132 C = 7556.200816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 C -0.137 4.137 4 C -0.106 4.106 5 C -0.115 4.115 6 C -0.137 4.137 7 C 0.141 3.859 8 H 0.058 0.942 9 N -0.707 5.707 10 C 0.556 3.444 11 O -0.592 6.592 12 C -0.139 4.139 13 C -0.199 4.199 14 C -0.094 4.094 15 C -0.218 4.218 16 C 0.068 3.932 17 C -0.499 4.499 18 H 0.085 0.915 19 C 0.030 3.970 20 N -0.826 5.826 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.251 1.251 25 C -0.133 4.133 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.412 0.588 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.110 0.890 42 H 0.286 0.714 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 2.010 -17.795 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.072 4.072 3 C -0.194 4.194 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.176 4.176 7 C 0.036 3.964 8 H 0.077 0.923 9 N -0.362 5.362 10 C 0.346 3.654 11 O -0.473 6.473 12 C -0.142 4.142 13 C -0.219 4.219 14 C -0.112 4.112 15 C -0.238 4.238 16 C 0.066 3.934 17 C -0.528 4.528 18 H 0.103 0.897 19 C -0.185 4.185 20 N -0.451 5.451 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.174 1.174 25 C -0.153 4.153 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.254 0.746 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.035 2.350 -17.409 17.597 hybrid contribution 0.198 -0.167 1.294 1.320 sum 1.234 2.183 -16.115 16.309 Atomic orbital electron populations 1.21944 0.93633 1.02300 1.02766 1.21413 0.96526 0.95831 0.93395 1.21896 1.01217 0.94232 1.02102 1.22475 0.96964 0.99029 0.95826 1.22440 0.98325 1.00700 0.93814 1.22779 0.99079 0.97842 0.97899 1.21834 0.87403 0.95447 0.91709 0.92334 1.46197 1.15274 1.67031 1.07712 1.18820 0.87589 0.76209 0.82752 1.90656 1.28695 1.54741 1.73257 1.19818 0.94476 1.05607 0.94327 1.20816 0.92110 1.09495 0.99494 1.20922 0.98601 0.98236 0.93407 1.21413 0.96068 1.10155 0.96132 1.17940 0.91188 0.90341 0.93905 1.19867 1.15119 1.23466 0.94370 0.89661 1.26875 0.94425 0.93152 1.04073 1.69896 1.20765 1.14346 1.40142 0.85237 0.78875 0.79123 0.76428 1.18488 1.19691 1.17449 1.21444 0.99028 1.02834 0.92042 0.93384 0.89765 0.91700 0.92245 0.90073 0.94220 0.89226 0.90281 0.90949 0.89867 0.93541 0.91574 0.74646 0.84945 0.84218 0.87225 0.90324 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 7.04 71.98 0.51 -2.13 16 2 C -0.07 -1.39 0.94 -51.46 -0.05 -1.44 16 3 C -0.14 -2.52 8.15 71.98 0.59 -1.94 16 4 C -0.11 -1.56 5.90 31.67 0.19 -1.37 16 5 C -0.12 -2.02 6.91 31.88 0.22 -1.80 16 6 C -0.14 -3.61 6.53 31.67 0.21 -3.40 16 7 C 0.14 4.05 2.86 45.72 0.13 4.18 16 8 H 0.06 2.05 7.14 -2.39 -0.02 2.03 16 9 N -0.71 -23.65 4.46 -441.93 -1.97 -25.62 16 10 C 0.56 25.56 7.76 86.80 0.67 26.23 16 11 O -0.59 -32.12 16.01 -3.89 -0.06 -32.18 16 12 C -0.14 -6.79 5.87 -20.13 -0.12 -6.91 16 13 C -0.20 -8.02 9.55 22.70 0.22 -7.80 16 14 C -0.09 -3.76 10.01 22.18 0.22 -3.53 16 15 C -0.22 -10.31 9.78 22.77 0.22 -10.09 16 16 C 0.07 3.79 5.57 -21.32 -0.12 3.68 16 17 C -0.50 -27.62 9.05 23.47 0.21 -27.40 16 18 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 19 C 0.03 1.58 5.14 85.25 0.44 2.02 16 20 N -0.83 -47.11 10.96 21.82 0.24 -46.88 16 21 Si 0.98 40.25 29.59 68.60 2.03 42.28 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 25 C -0.13 -7.59 8.24 23.01 0.19 -7.40 16 26 H 0.05 1.02 7.70 -2.39 -0.02 1.00 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.06 6.92 -2.39 -0.02 1.04 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.00 7.84 -2.39 -0.02 0.98 16 33 H 0.08 1.04 7.84 -2.38 -0.02 1.03 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 38 H 0.41 11.43 3.78 -92.71 -0.35 11.08 16 39 H 0.13 4.07 6.38 -2.91 -0.02 4.05 16 40 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.29 15.10 8.30 -92.71 -0.77 14.33 16 43 H 0.10 6.18 5.75 -2.91 -0.02 6.16 16 Total: -1.00 -70.05 342.34 4.62 -65.43 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.65 Total: 36.07 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 3.73 Total: -39.11 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.73 Total: -72.49 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.06 Total: -32.18 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -70.05 4.62 -65.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174946423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.808 kcal (2) G-P(sol) polarization free energy of solvation -70.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds