Wall clock time and date at job start Tue Mar 31 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00273 * 2 1 4 4 N 1.46500 * 109.47320 * 124.97951 * 3 2 1 5 5 C 1.46501 * 120.00365 * 273.42816 * 4 3 2 6 6 C 1.50703 * 109.46525 * 269.99815 * 5 4 3 7 7 H 1.08001 * 120.00313 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99618 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99953 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00121 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47147 * 90.00098 * 10 8 6 12 12 H 1.48494 * 109.47224 * 210.00051 * 10 8 6 13 13 H 1.48502 * 109.47219 * 330.00400 * 10 8 6 14 14 C 1.34779 * 119.99803 * 93.42057 * 4 3 2 15 15 O 1.21558 * 119.99567 * 355.00318 * 14 4 3 16 16 C 1.47837 * 119.99997 * 175.27601 * 14 4 3 17 17 C 1.39580 * 120.14474 * 86.42250 * 16 14 4 18 18 C 1.50702 * 120.07286 * 359.97438 * 17 16 14 19 19 C 1.37960 * 119.85248 * 179.74794 * 17 16 14 20 20 C 1.38360 * 120.14216 * 0.52778 * 19 17 16 21 21 C 1.50704 * 119.84961 * 179.76743 * 20 19 17 22 22 C 1.38353 * 120.29543 * 359.74266 * 20 19 17 23 23 C 1.37960 * 120.14593 * 359.97438 * 22 20 19 24 24 C 1.50695 * 120.07376 * 180.02562 * 23 22 20 25 25 H 1.08002 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.00394 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99993 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47030 * 4.98207 * 3 2 1 29 29 H 1.08994 * 109.47548 * 244.98608 * 3 2 1 30 30 H 1.09000 * 109.46993 * 29.99344 * 5 4 3 31 31 H 1.08996 * 109.46958 * 149.99660 * 5 4 3 32 32 H 0.97001 * 119.99627 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46981 * 89.99956 * 18 17 16 34 34 H 1.08998 * 109.47285 * 210.00575 * 18 17 16 35 35 H 1.09007 * 109.47119 * 330.00745 * 18 17 16 36 36 H 1.07996 * 119.92496 * 180.27733 * 19 17 16 37 37 H 1.08994 * 109.47207 * 269.97831 * 21 20 19 38 38 H 1.09004 * 109.46835 * 29.97793 * 21 20 19 39 39 H 1.08997 * 109.46794 * 149.97840 * 21 20 19 40 40 H 1.08001 * 119.92657 * 179.97438 * 22 20 19 41 41 H 1.08997 * 109.47337 * 271.50806 * 24 23 22 42 42 H 1.09005 * 109.47573 * 31.51108 * 24 23 22 43 43 H 1.09001 * 109.47174 * 151.50555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9935 1.3321 1.1317 5 6 2.5367 1.7952 2.4444 6 6 2.7537 3.2824 2.5556 7 1 3.1889 3.8278 1.7312 8 6 2.3978 3.9465 3.7104 9 7 2.5877 5.2442 3.8077 10 14 1.6459 3.0030 5.1365 11 1 2.7250 2.5266 6.0386 12 1 0.7279 3.8940 5.8904 13 1 0.8872 1.8381 4.6142 14 6 4.2693 0.9306 0.9653 15 8 4.6248 0.4612 -0.0982 16 6 5.2346 1.0556 2.0779 17 6 5.3411 0.0412 3.0308 18 6 4.4713 -1.1852 2.9286 19 6 6.2477 0.1617 4.0637 20 6 7.0426 1.2899 4.1624 21 6 8.0270 1.4170 5.2963 22 6 6.9381 2.3015 3.2244 23 6 6.0397 2.1909 2.1833 24 6 5.9276 3.2935 1.1622 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0892 29 1 2.6215 1.4025 -0.9312 30 1 1.4756 1.5734 2.5589 31 1 3.1008 1.2862 3.2258 32 1 2.3370 5.7114 4.6200 33 1 4.9798 -1.9426 2.3322 34 1 4.2783 -1.5779 3.9269 35 1 3.5266 -0.9220 2.4528 36 1 6.3342 -0.6245 4.7991 37 1 7.5447 1.9050 6.1432 38 1 8.3681 0.4255 5.5942 39 1 8.8803 2.0124 4.9716 40 1 7.5612 3.1797 3.3074 41 1 5.1998 4.0305 1.5017 42 1 6.8986 3.7728 1.0368 43 1 5.6034 2.8749 0.2094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293607066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:53 Heat of formation + Delta-G solvation = -2.599063 kcal Electronic energy + Delta-G solvation = -23789.589786 eV Core-core repulsion = 20606.777173 eV Total energy + Delta-G solvation = -3182.812613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06382 -38.16917 -35.54665 -33.67138 -33.19035 -32.83535 -32.11603 -28.16388 -27.60944 -27.43496 -26.32490 -25.14353 -22.61658 -21.03649 -20.37493 -19.74506 -18.49724 -17.03777 -16.59090 -15.92066 -15.72590 -14.96826 -14.28497 -14.23992 -13.94889 -13.78471 -13.42004 -12.98731 -12.91158 -12.78673 -12.59123 -12.55733 -12.35858 -12.28089 -12.10403 -11.80358 -11.53517 -11.35588 -11.18905 -10.99803 -10.87213 -10.79439 -10.64658 -10.55421 -10.25251 -9.61340 -9.33598 -9.02734 -8.68238 -8.11901 -8.01696 -7.80295 -6.18551 -4.17949 1.63997 1.84440 2.47956 3.20338 3.23063 3.27176 3.29574 3.86483 4.17876 4.30507 5.06324 5.06778 5.13922 5.21067 5.21313 5.31032 5.47781 5.57002 5.58140 5.76246 5.79561 5.85544 5.86614 5.93509 5.99123 6.05911 6.10634 6.15619 6.26532 6.28533 6.39854 6.48281 6.53308 6.71282 6.82636 6.83751 6.85115 6.91729 6.95488 7.06687 7.33356 7.42209 7.48859 8.08051 8.41348 8.80562 8.88279 9.42176 10.93752 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.008620 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.438833 B = 3247.581272 C = 4353.653513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C 0.141 3.859 4 N -0.580 5.580 5 C 0.208 3.792 6 C -0.532 4.532 7 H 0.082 0.918 8 C 0.080 3.920 9 N -0.891 5.891 10 Si 0.863 3.137 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.571 3.429 15 O -0.564 6.564 16 C -0.105 4.105 17 C -0.054 4.054 18 C -0.117 4.117 19 C -0.136 4.136 20 C -0.074 4.074 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.014 4.014 24 C -0.123 4.123 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -8.719 0.131 9.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.176 4.176 3 C 0.019 3.981 4 N -0.309 5.309 5 C 0.087 3.913 6 C -0.570 4.570 7 H 0.100 0.900 8 C -0.123 4.123 9 N -0.529 5.529 10 Si 0.690 3.310 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.359 3.641 15 O -0.444 6.444 16 C -0.108 4.108 17 C -0.055 4.055 18 C -0.174 4.174 19 C -0.154 4.154 20 C -0.074 4.074 21 C -0.168 4.168 22 C -0.146 4.146 23 C -0.015 4.015 24 C -0.179 4.179 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.139 0.861 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.241 -8.777 -0.287 9.753 hybrid contribution -0.572 -0.270 1.083 1.255 sum 3.669 -9.048 0.797 9.796 Atomic orbital electron populations 1.23796 0.95773 1.01644 1.01758 1.23387 0.96065 0.99315 0.98814 1.20487 0.92341 0.94883 0.90411 1.47942 1.08747 1.62138 1.12027 1.19840 0.95443 0.96397 0.79593 1.21326 1.42533 0.90524 1.02610 0.90033 1.24780 0.94985 0.94635 0.97905 1.69874 1.47484 1.07643 1.27890 0.87032 0.79985 0.80477 0.83503 1.19821 1.20995 1.18945 1.18246 0.82022 0.76710 0.87072 1.90700 1.78957 1.46652 1.28122 1.19456 0.98818 0.95809 0.96698 1.19712 0.96678 0.95323 0.93778 1.20843 0.98968 0.95250 1.02351 1.20613 0.97738 0.98350 0.98723 1.19863 0.97141 0.94250 0.96193 1.20764 0.97441 1.02084 0.96462 1.20716 1.00221 0.98707 0.94911 1.19695 0.93070 0.93235 0.95479 1.20952 1.02582 0.97362 0.96986 0.88340 0.88854 0.87761 0.89558 0.89755 0.94932 0.94972 0.92519 0.91133 0.91411 0.91466 0.86331 0.91233 0.91908 0.91729 0.86064 0.88399 0.92146 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 14.32 29.02 0.42 -2.23 16 2 C -0.16 -2.48 9.85 -36.02 -0.35 -2.84 16 3 C 0.14 2.57 5.85 -5.19 -0.03 2.54 16 4 N -0.58 -12.03 2.33 -177.55 -0.41 -12.44 16 5 C 0.21 4.71 3.98 -5.19 -0.02 4.69 16 6 C -0.53 -13.74 9.78 -34.44 -0.34 -14.08 16 7 H 0.08 2.29 6.75 -52.49 -0.35 1.94 16 8 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 9 N -0.89 -25.47 13.96 55.43 0.77 -24.69 16 10 Si 0.86 20.26 27.47 -169.99 -4.67 15.60 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 14 C 0.57 12.17 4.08 -12.33 -0.05 12.12 16 15 O -0.56 -12.93 16.59 5.31 0.09 -12.84 16 16 C -0.10 -2.15 4.15 -104.97 -0.44 -2.58 16 17 C -0.05 -0.99 5.10 -104.22 -0.53 -1.52 16 18 C -0.12 -1.85 9.48 36.01 0.34 -1.51 16 19 C -0.14 -2.23 9.34 -39.64 -0.37 -2.60 16 20 C -0.07 -1.20 5.89 -104.53 -0.62 -1.81 16 21 C -0.11 -1.35 10.01 36.01 0.36 -0.99 16 22 C -0.13 -2.25 9.34 -39.64 -0.37 -2.62 16 23 C -0.01 -0.28 5.91 -104.23 -0.62 -0.90 16 24 C -0.12 -2.35 9.64 36.00 0.35 -2.00 16 25 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 26 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 27 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.09 1.55 7.75 -51.93 -0.40 1.14 16 29 H 0.08 1.54 7.39 -51.93 -0.38 1.16 16 30 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.03 0.74 5.56 -51.93 -0.29 0.46 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.07 1.15 6.87 -51.93 -0.36 0.79 16 36 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.10 2.12 6.65 -51.93 -0.35 1.77 16 42 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 43 H 0.06 1.23 6.96 -51.93 -0.36 0.86 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -29.90 355.36 -7.89 -37.79 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.66 Total: 5.49 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.37 Total: -14.25 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.36 Total: -37.13 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.90 -7.89 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293607066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.190 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds