Wall clock time and date at job start Tue Mar 31 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46756 * 2 1 4 4 C 1.37977 * 120.07510 * 268.79622 * 3 2 1 5 5 C 1.38336 * 120.14843 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.29037 * 359.97438 * 5 4 3 7 7 C 1.37932 * 120.14577 * 359.74708 * 6 5 4 8 8 C 1.39559 * 120.07297 * 88.77865 * 3 2 1 9 9 C 1.47840 * 120.14740 * 359.97438 * 8 3 2 10 10 O 1.21554 * 120.00078 * 306.25955 * 9 8 3 11 11 N 1.34773 * 120.00288 * 126.24931 * 9 8 3 12 12 C 1.46928 * 120.63022 * 174.13818 * 11 9 8 13 13 C 1.53195 * 108.77371 * 126.37703 * 12 11 9 14 14 C 1.53037 * 109.31349 * 54.63291 * 13 12 11 15 15 C 1.50709 * 109.44520 * 178.62229 * 14 13 12 16 16 H 1.07996 * 119.99834 * 120.06268 * 15 14 13 17 17 C 1.37870 * 119.99940 * 300.06031 * 15 14 13 18 18 N 1.31514 * 120.00160 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47036 * 90.00020 * 19 17 15 21 21 H 1.48500 * 109.47172 * 209.99974 * 19 17 15 22 22 H 1.48494 * 109.47353 * 330.00116 * 19 17 15 23 23 C 1.53037 * 109.53895 * 298.63258 * 14 13 12 24 24 C 1.46928 * 120.62928 * 354.12101 * 11 9 8 25 25 H 1.09002 * 109.46827 * 299.99450 * 1 2 3 26 26 H 1.08994 * 109.47342 * 59.99711 * 1 2 3 27 27 H 1.09002 * 109.46759 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47256 * 240.00756 * 2 1 3 29 29 H 1.08996 * 109.47647 * 119.99853 * 2 1 3 30 30 H 1.07999 * 119.92783 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.85881 * 179.97438 * 5 4 3 32 32 H 1.08004 * 119.92745 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.07824 * 180.26920 * 7 6 5 34 34 H 1.09007 * 109.58238 * 246.15988 * 12 11 9 35 35 H 1.08995 * 109.59043 * 6.58714 * 12 11 9 36 36 H 1.08997 * 109.49482 * 174.58801 * 13 12 11 37 37 H 1.09006 * 109.49313 * 294.67937 * 13 12 11 38 38 H 1.09000 * 109.46098 * 58.65884 * 14 13 12 39 39 H 0.97007 * 120.00065 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.49946 * 301.41730 * 23 14 13 41 41 H 1.09003 * 109.52644 * 181.33497 * 23 14 13 42 42 H 1.09001 * 109.58863 * 353.41034 * 24 11 9 43 43 H 1.09000 * 109.58626 * 113.69542 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2863 2.0644 -1.1937 5 6 2.7479 3.3685 -1.1955 6 6 2.9574 4.0364 -0.0017 7 6 2.7019 3.4066 1.1985 8 6 2.2411 2.0888 1.2074 9 6 1.9700 1.4058 2.4903 10 8 0.8846 0.8965 2.6903 11 7 2.9264 1.3476 3.4381 12 6 2.6332 0.7868 4.7641 13 6 3.6574 -0.3098 5.0730 14 6 5.0698 0.2621 4.9307 15 6 6.0794 -0.8051 5.2670 16 1 6.8039 -1.1148 4.5284 17 6 6.0781 -1.3858 6.5174 18 7 5.1962 -1.0082 7.4169 19 14 7.3291 -2.7091 6.9339 20 1 8.5475 -2.0774 7.5014 21 1 6.7471 -3.6447 7.9294 22 1 7.6874 -3.4569 5.7021 23 6 5.2879 0.7350 3.4917 24 6 4.2822 1.8435 3.1648 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.1253 1.5487 -2.1289 31 1 2.9457 3.8676 -2.1326 32 1 3.3183 5.0543 -0.0099 33 1 2.8616 3.9303 2.1294 34 1 2.7012 1.5727 5.5163 35 1 1.6299 0.3610 4.7671 36 1 3.5108 -0.6678 6.0920 37 1 3.5274 -1.1363 4.3743 38 1 5.1909 1.1042 5.6121 39 1 5.1951 -1.4171 8.2966 40 1 5.1425 -0.1012 2.8079 41 1 6.3018 1.1206 3.3846 42 1 4.3669 2.1149 2.1125 43 1 4.4837 2.7171 3.7848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334960705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:13 Heat of formation + Delta-G solvation = -41.618716 kcal Electronic energy + Delta-G solvation = -23247.274564 eV Core-core repulsion = 20062.769932 eV Total energy + Delta-G solvation = -3184.504632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64084 -39.65606 -38.30019 -35.50567 -34.90010 -33.16899 -32.43958 -31.26120 -30.34101 -28.07510 -25.56839 -24.80617 -24.10283 -23.68605 -22.19140 -21.29886 -19.95407 -18.62428 -18.19811 -17.30215 -16.80841 -16.70766 -16.51458 -15.66393 -15.49456 -14.97043 -14.83695 -14.71358 -14.53288 -14.41935 -14.18991 -14.07466 -13.72586 -13.41884 -13.08931 -12.98208 -12.83194 -12.72293 -12.54369 -12.45267 -12.18432 -11.98898 -11.82489 -11.72768 -11.46759 -11.11218 -10.87456 -10.74673 -10.42105 -9.81814 -9.67663 -9.53846 -8.08933 -6.22933 0.09445 0.43788 1.40379 1.42210 1.51305 1.66136 2.07558 2.42963 2.81923 3.17829 3.48574 3.79689 3.88834 4.06306 4.16881 4.27894 4.29433 4.31030 4.46246 4.47912 4.55160 4.56896 4.57813 4.60990 4.68237 4.84930 4.93159 4.96056 4.96840 5.06955 5.13951 5.18666 5.20409 5.36920 5.44241 5.45031 5.49290 5.55515 5.61001 5.68019 5.95419 6.02257 6.08412 6.36637 6.47667 6.87831 7.12956 7.45346 8.94663 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.004221 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.130819 B = 6632.342724 C = 6894.682060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.053 4.053 4 C -0.124 4.124 5 C -0.093 4.093 6 C -0.125 4.125 7 C -0.094 4.094 8 C -0.143 4.143 9 C 0.552 3.448 10 O -0.575 6.575 11 N -0.598 5.598 12 C 0.120 3.880 13 C -0.110 4.110 14 C 0.046 3.954 15 C -0.533 4.533 16 H 0.052 0.948 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.950 3.050 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.115 4.115 24 C 0.113 3.887 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.037 0.963 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.018 0.982 38 H 0.006 0.994 39 H 0.261 0.739 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 10.157 -17.633 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.111 4.111 6 C -0.143 4.143 7 C -0.112 4.112 8 C -0.146 4.146 9 C 0.342 3.658 10 O -0.456 6.456 11 N -0.329 5.329 12 C -0.002 4.002 13 C -0.148 4.148 14 C 0.028 3.972 15 C -0.571 4.571 16 H 0.070 0.930 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.777 3.223 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.154 4.154 24 C -0.009 4.009 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.168 0.832 31 H 0.178 0.822 32 H 0.175 0.825 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.037 0.963 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.778 9.849 -17.318 20.487 hybrid contribution 0.554 -1.156 1.147 1.720 sum -4.224 8.693 -16.171 18.839 Atomic orbital electron populations 1.21690 0.93897 1.01921 1.02119 1.20539 0.97247 0.92445 1.02062 1.20056 0.96670 0.96343 0.92313 1.21273 1.00018 0.95835 0.97035 1.21714 0.95910 0.93948 0.99493 1.21431 1.00139 1.01410 0.91309 1.21412 0.96936 0.92653 1.00210 1.19756 1.06211 0.96643 0.92007 1.18921 0.83643 0.79029 0.84202 1.90684 1.25593 1.48656 1.80677 1.48222 1.11535 1.60136 1.13018 1.21590 0.99166 0.96643 0.82827 1.21755 0.96121 0.95640 1.01326 1.18603 0.92122 0.94642 0.91837 1.21566 1.15809 1.21649 0.98113 0.93021 1.25695 0.97434 0.98863 0.96425 1.69975 1.36289 1.43874 1.05352 0.85671 0.79474 0.79311 0.77886 1.19916 1.21160 1.19601 1.21869 0.98475 0.97222 0.97789 1.21977 0.79831 0.96720 1.02344 0.93536 0.91266 0.92314 0.88914 0.94370 0.83182 0.82242 0.82535 0.85092 0.91580 0.91331 0.90767 0.96300 0.97568 0.93024 0.94071 0.90783 0.88254 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.71 71.98 0.70 -2.92 16 2 C -0.09 -2.30 5.37 29.85 0.16 -2.14 16 3 C -0.05 -1.36 5.16 -19.61 -0.10 -1.46 16 4 C -0.12 -2.27 9.68 22.23 0.22 -2.05 16 5 C -0.09 -1.36 10.04 22.33 0.22 -1.14 16 6 C -0.13 -2.04 10.03 22.23 0.22 -1.81 16 7 C -0.09 -2.12 7.79 22.53 0.18 -1.94 16 8 C -0.14 -4.15 4.60 -20.09 -0.09 -4.24 16 9 C 0.55 20.25 6.11 86.79 0.53 20.78 16 10 O -0.58 -24.47 13.56 -3.89 -0.05 -24.52 16 11 N -0.60 -22.14 2.97 -822.30 -2.44 -24.58 16 12 C 0.12 5.01 6.44 86.36 0.56 5.57 16 13 C -0.11 -5.34 5.15 30.67 0.16 -5.18 16 14 C 0.05 2.27 2.06 -11.51 -0.02 2.25 16 15 C -0.53 -29.01 8.56 25.60 0.22 -28.79 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 17 C 0.01 0.80 5.30 84.65 0.45 1.25 16 18 N -0.92 -52.30 11.31 21.44 0.24 -52.06 16 19 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C -0.12 -4.53 5.30 30.67 0.16 -4.37 16 24 C 0.11 3.66 5.58 86.36 0.48 4.14 16 25 H 0.05 1.50 6.23 -2.39 -0.01 1.49 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 29 H 0.04 1.28 6.92 -2.39 -0.02 1.26 16 30 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.13 2.77 7.77 -2.91 -0.02 2.75 16 34 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 35 H 0.07 2.95 7.00 -2.39 -0.02 2.94 16 36 H 0.07 4.05 6.03 -2.39 -0.01 4.03 16 37 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.10 2.74 5.40 -2.39 -0.01 2.72 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -66.28 338.39 4.79 -61.49 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.98 Total: 16.28 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 4.04 Total: -22.08 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -2.20 Total: -76.65 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.28 4.79 -61.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334960705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.867 kcal (2) G-P(sol) polarization free energy of solvation -66.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds