Wall clock time and date at job start Tue Mar 31 2020 06:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32568 * 119.99657 * 2 1 4 4 C 1.47814 * 120.00043 * 171.81494 * 3 2 1 5 5 C 1.39528 * 120.14254 * 322.39938 * 4 3 2 6 6 C 1.37981 * 119.85478 * 179.73507 * 5 4 3 7 7 C 1.38340 * 120.14148 * 0.51126 * 6 5 4 8 8 C 1.38349 * 120.28530 * 359.76782 * 7 6 5 9 9 C 1.37972 * 120.14119 * 359.97118 * 8 7 6 10 10 C 1.50694 * 120.00625 * 180.02562 * 2 1 3 11 11 N 1.46506 * 109.47095 * 56.56694 * 10 2 1 12 12 C 1.46500 * 119.99693 * 264.98126 * 11 10 2 13 13 C 1.34772 * 119.99800 * 84.97886 * 11 10 2 14 14 O 1.21284 * 120.00232 * 0.02562 * 13 11 10 15 15 C 1.50702 * 119.99873 * 179.97438 * 13 11 10 16 16 C 1.53002 * 109.46921 * 180.02562 * 15 13 11 17 17 C 1.50699 * 109.46572 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00744 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99763 * 180.02562 * 17 16 15 20 20 N 1.31525 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00359 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47232 * 89.99544 * 21 19 17 23 23 H 1.48497 * 109.47230 * 209.99604 * 21 19 17 24 24 H 1.48500 * 109.46928 * 329.99941 * 21 19 17 25 25 H 1.09000 * 109.47441 * 90.00284 * 1 2 3 26 26 H 1.09002 * 109.46775 * 209.99612 * 1 2 3 27 27 H 1.09001 * 109.47430 * 329.99603 * 1 2 3 28 28 H 1.08004 * 120.00169 * 351.55061 * 3 2 1 29 29 H 1.08002 * 120.07246 * 359.97438 * 5 4 3 30 30 H 1.07998 * 119.92788 * 180.25532 * 6 5 4 31 31 H 1.07997 * 119.85730 * 179.73454 * 7 6 5 32 32 H 1.07997 * 119.92935 * 179.97438 * 8 7 6 33 33 H 1.08003 * 120.06936 * 180.02562 * 9 8 7 34 34 H 1.08991 * 109.47596 * 176.57079 * 10 2 1 35 35 H 1.09000 * 109.46815 * 296.56958 * 10 2 1 36 36 H 1.08999 * 109.47269 * 95.08319 * 12 11 10 37 37 H 1.09001 * 109.46663 * 215.07637 * 12 11 10 38 38 H 1.08996 * 109.47833 * 335.07861 * 12 11 10 39 39 H 1.09001 * 109.46929 * 300.00200 * 15 13 11 40 40 H 1.09004 * 109.46848 * 60.00097 * 15 13 11 41 41 H 1.09001 * 109.47242 * 299.99714 * 16 15 13 42 42 H 1.09000 * 109.47043 * 60.00242 * 16 15 13 43 43 H 0.96998 * 119.99734 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1697 1.1481 0.0000 4 6 3.6366 1.1547 0.1822 5 6 4.2369 0.2567 1.0654 6 6 5.6073 0.2644 1.2269 7 6 6.3846 1.1669 0.5233 8 6 5.7949 2.0638 -0.3496 9 6 4.4262 2.0628 -0.5240 10 6 2.2606 -1.3050 -0.0006 11 7 1.8458 -2.1079 -1.1537 12 6 0.7950 -3.1176 -1.0031 13 6 2.4308 -1.9177 -2.3528 14 8 3.3010 -1.0821 -2.4772 15 6 2.0046 -2.7440 -3.5387 16 6 2.8194 -2.3323 -4.7665 17 6 2.3927 -3.1582 -5.9526 18 1 1.6181 -3.9027 -5.8417 19 6 2.9918 -2.9643 -7.1791 20 7 3.9355 -2.0581 -7.3141 21 14 2.4635 -3.9885 -8.6492 22 1 1.3558 -3.3002 -9.3596 23 1 3.6136 -4.1589 -9.5729 24 1 2.0007 -5.3206 -8.1838 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6385 2.0784 -0.1374 29 1 3.6308 -0.4454 1.6185 30 1 6.0736 -0.4329 1.9070 31 1 7.4563 1.1718 0.6564 32 1 6.4072 2.7662 -0.8956 33 1 3.9671 2.7632 -1.2061 34 1 3.3305 -1.1067 -0.0620 35 1 2.0442 -1.8498 0.9183 36 1 -0.1654 -2.6878 -1.2880 37 1 1.0160 -3.9704 -1.6450 38 1 0.7524 -3.4459 0.0353 39 1 2.1758 -3.7994 -3.3266 40 1 0.9447 -2.5799 -3.7338 41 1 2.6485 -1.2769 -4.9788 42 1 3.8791 -2.4967 -4.5711 43 1 4.3567 -1.9214 -8.1770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360468708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:16 Heat of formation + Delta-G solvation = -0.867714 kcal Electronic energy + Delta-G solvation = -22492.854761 eV Core-core repulsion = 19310.117225 eV Total energy + Delta-G solvation = -3182.737536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.79776 -38.86177 -36.27416 -34.30823 -33.41106 -31.15367 -30.87095 -30.76245 -27.88693 -26.57162 -26.23782 -24.82646 -22.46544 -21.88885 -21.21952 -18.82973 -18.27125 -16.92448 -16.56989 -15.90978 -15.62726 -15.40134 -14.99823 -14.75810 -14.38675 -14.03094 -13.76171 -13.34538 -13.28054 -12.94481 -12.79017 -12.55779 -12.35961 -12.18272 -12.15779 -12.08670 -11.56463 -11.50888 -11.06847 -10.95709 -10.91278 -10.74818 -10.56838 -9.90609 -9.59774 -9.57720 -9.11207 -8.91117 -8.78002 -8.34780 -8.27933 -8.00645 -5.93282 -3.97568 1.11853 1.52515 2.35172 3.33517 3.34722 3.40331 3.42886 3.51214 3.97694 4.49253 4.74448 4.87889 4.99539 5.00983 5.07665 5.15739 5.24464 5.37130 5.41496 5.46407 5.52843 5.55227 5.59416 5.67825 5.69025 5.78545 5.90772 5.94547 6.06956 6.14800 6.27756 6.29110 6.41030 6.52946 6.60867 6.67199 6.79425 6.89126 6.98244 7.11334 7.77495 7.82473 7.90859 8.10987 8.42264 8.85258 9.11313 9.65724 11.17683 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.004108 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.800292 B = 6813.895052 C = 7875.970649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.040 4.040 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.117 4.117 9 C -0.100 4.100 10 C 0.135 3.865 11 N -0.626 5.626 12 C 0.082 3.918 13 C 0.508 3.492 14 O -0.522 6.522 15 C -0.127 4.127 16 C 0.038 3.962 17 C -0.526 4.526 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.022 0.978 42 H 0.023 0.977 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 4.000 20.309 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.130 4.130 3 C -0.132 4.132 4 C -0.040 4.040 5 C -0.134 4.134 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.135 4.135 9 C -0.118 4.118 10 C 0.013 3.987 11 N -0.362 5.362 12 C -0.062 4.062 13 C 0.298 3.702 14 O -0.396 6.396 15 C -0.167 4.167 16 C 0.000 4.000 17 C -0.564 4.564 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.386 4.505 20.090 20.865 hybrid contribution -0.409 -0.580 -0.970 1.202 sum -3.795 3.925 19.120 19.884 Atomic orbital electron populations 1.20724 0.91783 1.01938 1.02209 1.22413 0.95919 0.95223 0.99408 1.21439 0.91910 0.97683 1.02204 1.18947 0.93130 0.95669 0.96293 1.21295 0.94940 0.98218 0.98939 1.21009 0.93787 0.99099 1.00188 1.21135 0.99603 0.96136 0.97263 1.21065 0.94850 0.99221 0.98384 1.21217 0.93731 0.98596 0.98296 1.20972 1.00379 0.88949 0.88388 1.48092 1.39953 1.38368 1.09756 1.21760 0.90654 0.91768 1.01974 1.21559 0.81107 0.83879 0.83661 1.90686 1.30573 1.34579 1.83733 1.21871 1.02128 0.98622 0.94035 1.18889 0.95050 0.97136 0.88884 1.21225 1.20721 1.20270 0.94202 0.92680 1.25022 0.95039 0.95409 0.98871 1.70007 1.25297 1.33232 1.24314 0.86607 0.78115 0.80614 0.82708 1.20694 1.21228 1.19889 0.91425 0.91867 0.91948 0.86358 0.86052 0.86270 0.86384 0.86159 0.86123 0.87928 0.90665 0.93046 0.90817 0.91711 0.90458 0.90522 0.95948 0.95908 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.74 36.00 0.35 -0.80 16 2 C -0.13 -1.66 5.58 -101.26 -0.56 -2.22 16 3 C -0.11 -1.53 9.39 -37.57 -0.35 -1.88 16 4 C -0.04 -0.58 5.20 -105.02 -0.55 -1.13 16 5 C -0.12 -1.51 7.27 -39.19 -0.28 -1.80 16 6 C -0.12 -1.51 10.03 -39.64 -0.40 -1.91 16 7 C -0.12 -1.54 10.04 -39.50 -0.40 -1.94 16 8 C -0.12 -1.57 10.03 -39.64 -0.40 -1.96 16 9 C -0.10 -1.46 9.79 -39.20 -0.38 -1.84 16 10 C 0.14 1.83 4.03 -5.19 -0.02 1.81 16 11 N -0.63 -9.49 2.73 -182.96 -0.50 -9.99 16 12 C 0.08 0.90 10.04 59.85 0.60 1.50 16 13 C 0.51 10.29 7.63 -10.99 -0.08 10.21 16 14 O -0.52 -12.70 15.65 5.55 0.09 -12.62 16 15 C -0.13 -2.68 4.26 -27.88 -0.12 -2.79 16 16 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 17 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.71 5.46 -17.81 -0.10 1.62 16 20 N -0.89 -27.83 13.29 55.43 0.74 -27.10 16 21 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 29 H 0.12 1.34 6.35 -52.49 -0.33 1.01 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 34 H 0.10 1.62 3.99 -51.93 -0.21 1.41 16 35 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.82 6.65 -51.93 -0.35 0.47 16 38 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 39 H 0.08 1.50 7.41 -51.93 -0.38 1.11 16 40 H 0.08 1.50 8.11 -51.93 -0.42 1.07 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.25 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -35.19 357.45 -9.12 -44.31 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.68 Total: 0.82 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -3.13 Total: -17.68 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.24 Total: -37.09 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.19 -9.12 -44.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360468708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.444 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds