Wall clock time and date at job start Tue Mar 31 2020 06:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32568 * 119.99657 * 2 1 4 4 C 1.47814 * 120.00043 * 171.81494 * 3 2 1 5 5 C 1.39528 * 120.14254 * 322.39938 * 4 3 2 6 6 C 1.37981 * 119.85478 * 179.73507 * 5 4 3 7 7 C 1.38340 * 120.14148 * 0.51126 * 6 5 4 8 8 C 1.38349 * 120.28530 * 359.76782 * 7 6 5 9 9 C 1.37972 * 120.14119 * 359.97118 * 8 7 6 10 10 C 1.50694 * 120.00625 * 180.02562 * 2 1 3 11 11 N 1.46506 * 109.47095 * 56.56694 * 10 2 1 12 12 C 1.46500 * 119.99693 * 264.98126 * 11 10 2 13 13 C 1.34772 * 119.99800 * 84.97886 * 11 10 2 14 14 O 1.21284 * 120.00232 * 0.02562 * 13 11 10 15 15 C 1.50702 * 119.99873 * 179.97438 * 13 11 10 16 16 C 1.53002 * 109.46921 * 180.02562 * 15 13 11 17 17 C 1.50699 * 109.46572 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00744 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99763 * 180.02562 * 17 16 15 20 20 N 1.31525 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00359 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47232 * 89.99544 * 21 19 17 23 23 H 1.48497 * 109.47230 * 209.99604 * 21 19 17 24 24 H 1.48500 * 109.46928 * 329.99941 * 21 19 17 25 25 H 1.09000 * 109.47441 * 90.00284 * 1 2 3 26 26 H 1.09002 * 109.46775 * 209.99612 * 1 2 3 27 27 H 1.09001 * 109.47430 * 329.99603 * 1 2 3 28 28 H 1.08004 * 120.00169 * 351.55061 * 3 2 1 29 29 H 1.08002 * 120.07246 * 359.97438 * 5 4 3 30 30 H 1.07998 * 119.92788 * 180.25532 * 6 5 4 31 31 H 1.07997 * 119.85730 * 179.73454 * 7 6 5 32 32 H 1.07997 * 119.92935 * 179.97438 * 8 7 6 33 33 H 1.08003 * 120.06936 * 180.02562 * 9 8 7 34 34 H 1.08991 * 109.47596 * 176.57079 * 10 2 1 35 35 H 1.09000 * 109.46815 * 296.56958 * 10 2 1 36 36 H 1.08999 * 109.47269 * 95.08319 * 12 11 10 37 37 H 1.09001 * 109.46663 * 215.07637 * 12 11 10 38 38 H 1.08996 * 109.47833 * 335.07861 * 12 11 10 39 39 H 1.09001 * 109.46929 * 300.00200 * 15 13 11 40 40 H 1.09004 * 109.46848 * 60.00097 * 15 13 11 41 41 H 1.09001 * 109.47242 * 299.99714 * 16 15 13 42 42 H 1.09000 * 109.47043 * 60.00242 * 16 15 13 43 43 H 0.96998 * 119.99734 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1697 1.1481 0.0000 4 6 3.6366 1.1547 0.1822 5 6 4.2369 0.2567 1.0654 6 6 5.6073 0.2644 1.2269 7 6 6.3846 1.1669 0.5233 8 6 5.7949 2.0638 -0.3496 9 6 4.4262 2.0628 -0.5240 10 6 2.2606 -1.3050 -0.0006 11 7 1.8458 -2.1079 -1.1537 12 6 0.7950 -3.1176 -1.0031 13 6 2.4308 -1.9177 -2.3528 14 8 3.3010 -1.0821 -2.4772 15 6 2.0046 -2.7440 -3.5387 16 6 2.8194 -2.3323 -4.7665 17 6 2.3927 -3.1582 -5.9526 18 1 1.6181 -3.9027 -5.8417 19 6 2.9918 -2.9643 -7.1791 20 7 3.9355 -2.0581 -7.3141 21 14 2.4635 -3.9885 -8.6492 22 1 1.3558 -3.3002 -9.3596 23 1 3.6136 -4.1589 -9.5729 24 1 2.0007 -5.3206 -8.1838 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6385 2.0784 -0.1374 29 1 3.6308 -0.4454 1.6185 30 1 6.0736 -0.4329 1.9070 31 1 7.4563 1.1718 0.6564 32 1 6.4072 2.7662 -0.8956 33 1 3.9671 2.7632 -1.2061 34 1 3.3305 -1.1067 -0.0620 35 1 2.0442 -1.8498 0.9183 36 1 -0.1654 -2.6878 -1.2880 37 1 1.0160 -3.9704 -1.6450 38 1 0.7524 -3.4459 0.0353 39 1 2.1758 -3.7994 -3.3266 40 1 0.9447 -2.5799 -3.7338 41 1 2.6485 -1.2769 -4.9788 42 1 3.8791 -2.4967 -4.5711 43 1 4.3567 -1.9214 -8.1770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360468708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:16 Heat of formation + Delta-G solvation = -21.017110 kcal Electronic energy + Delta-G solvation = -22493.728504 eV Core-core repulsion = 19310.117225 eV Total energy + Delta-G solvation = -3183.611279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06783 -40.04879 -37.48257 -35.61673 -35.43921 -32.97828 -31.95398 -31.82177 -29.05036 -27.95313 -27.35520 -26.41005 -23.76993 -23.08659 -22.71214 -20.17558 -19.42687 -18.76910 -17.78092 -17.38094 -17.03821 -16.57126 -16.39230 -16.20600 -15.90654 -15.11681 -14.93997 -14.64998 -14.33632 -14.25821 -14.06459 -13.86458 -13.67039 -13.48256 -13.31859 -13.14785 -13.05839 -12.82528 -12.58846 -12.47704 -12.42451 -11.93688 -11.92388 -11.73606 -11.57302 -11.30384 -10.75241 -10.57425 -10.43127 -9.81681 -9.54919 -9.01825 -8.18325 -6.32903 0.10869 0.50671 1.32032 1.41291 1.44347 1.55324 1.78629 2.27061 2.44125 2.95235 3.14509 3.77428 3.86787 3.93490 4.03417 4.09900 4.20108 4.28761 4.36222 4.42386 4.49966 4.52789 4.56892 4.66244 4.74385 4.78254 4.82971 4.87345 4.94565 5.04721 5.10395 5.13738 5.16461 5.44260 5.47661 5.52945 5.60186 5.62033 5.65967 5.69761 5.84609 5.92593 6.12971 6.17088 6.46540 6.85799 7.35301 7.38412 8.94498 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.004108 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.800292 B = 6813.895052 C = 7875.970649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.129 4.129 3 C -0.131 4.131 4 C -0.059 4.059 5 C -0.122 4.122 6 C -0.129 4.129 7 C -0.134 4.134 8 C -0.133 4.133 9 C -0.132 4.132 10 C 0.129 3.871 11 N -0.611 5.611 12 C 0.070 3.930 13 C 0.504 3.496 14 O -0.577 6.577 15 C -0.114 4.114 16 C 0.046 3.954 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.254 1.254 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.125 0.875 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.098 0.902 41 H -0.023 1.023 42 H -0.021 1.021 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 1.531 21.663 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.130 4.130 3 C -0.150 4.150 4 C -0.059 4.059 5 C -0.140 4.140 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.150 4.150 10 C 0.008 3.992 11 N -0.344 5.344 12 C -0.071 4.071 13 C 0.294 3.706 14 O -0.456 6.456 15 C -0.154 4.154 16 C 0.008 3.992 17 C -0.580 4.580 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.177 1.177 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.143 0.857 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.134 0.866 34 H 0.097 0.903 35 H 0.136 0.864 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.116 0.884 41 H -0.004 1.004 42 H -0.003 1.003 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.544 2.005 21.500 22.294 hybrid contribution 0.253 0.200 -1.318 1.357 sum -5.291 2.204 20.182 20.981 Atomic orbital electron populations 1.20757 0.89722 1.03936 1.01859 1.22615 0.97305 0.94535 0.98574 1.21630 0.91760 0.98575 1.03049 1.19226 0.93848 0.96083 0.96756 1.21573 0.95626 0.98110 0.98706 1.21425 0.93760 0.99240 1.00245 1.21500 1.01006 0.95805 0.96843 1.21347 0.94719 1.00037 0.98999 1.21422 0.94704 0.99578 0.99271 1.21155 0.99264 0.89748 0.89020 1.47994 1.39590 1.38530 1.08312 1.22134 0.89672 0.90664 1.04658 1.21351 0.80963 0.83215 0.85115 1.90675 1.33240 1.36882 1.84843 1.21617 1.01872 0.99934 0.91951 1.18652 0.93665 0.94612 0.92245 1.21708 1.21049 1.20569 0.94686 0.90594 1.26155 0.94803 0.96652 1.02789 1.70196 1.26953 1.35407 1.25345 0.85314 0.77702 0.79297 0.77895 1.19675 1.21169 1.17737 0.92729 0.89442 0.90528 0.85699 0.84116 0.83500 0.84039 0.84914 0.86619 0.90337 0.86447 0.91500 0.90652 0.87914 0.88134 0.88401 1.00435 1.00286 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.74 71.23 0.69 -1.25 16 2 C -0.13 -3.15 5.58 -17.60 -0.10 -3.25 16 3 C -0.13 -3.57 9.39 23.65 0.22 -3.35 16 4 C -0.06 -1.76 5.20 -20.12 -0.10 -1.86 16 5 C -0.12 -3.15 7.27 22.52 0.16 -2.99 16 6 C -0.13 -3.10 10.03 22.23 0.22 -2.88 16 7 C -0.13 -3.36 10.04 22.32 0.22 -3.14 16 8 C -0.13 -3.75 10.03 22.23 0.22 -3.53 16 9 C -0.13 -4.11 9.79 22.52 0.22 -3.89 16 10 C 0.13 3.24 4.03 85.63 0.34 3.58 16 11 N -0.61 -17.24 2.73 -851.15 -2.33 -19.57 16 12 C 0.07 1.26 10.04 127.77 1.28 2.54 16 13 C 0.50 20.50 7.63 87.66 0.67 21.17 16 14 O -0.58 -29.55 15.65 -3.04 -0.05 -29.60 16 15 C -0.11 -4.78 4.26 29.85 0.13 -4.66 16 16 C 0.05 2.64 4.26 29.85 0.13 2.77 16 17 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 18 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 19 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 20 N -0.94 -60.78 13.29 21.45 0.28 -60.49 16 21 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.25 -10.76 7.11 99.48 0.71 -10.06 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.16 8.12 -2.39 -0.02 1.14 16 27 H 0.08 1.18 8.07 -2.39 -0.02 1.16 16 28 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.14 2.89 6.35 -2.91 -0.02 2.88 16 30 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.08 2.43 3.99 -2.39 -0.01 2.42 16 35 H 0.12 1.93 7.75 -2.39 -0.02 1.91 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.37 6.65 -2.39 -0.02 1.35 16 38 H 0.10 1.12 7.79 -2.39 -0.02 1.10 16 39 H 0.10 3.72 7.41 -2.39 -0.02 3.70 16 40 H 0.10 3.66 8.11 -2.39 -0.02 3.64 16 41 H -0.02 -1.49 8.10 -2.39 -0.02 -1.51 16 42 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 43 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -81.71 357.45 5.93 -75.78 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.98 Total: 18.98 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 5.01 Total: -31.92 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -2.04 Total: -80.06 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.05 Total: -29.60 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -81.71 5.93 -75.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360468708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.765 kcal (2) G-P(sol) polarization free energy of solvation -81.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds