Wall clock time and date at job start Tue Mar 31 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38261 * 120.00257 * 2 1 4 4 C 1.38208 * 120.00000 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00475 * 0.02742 * 4 3 2 6 6 C 1.38215 * 119.99560 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99603 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47341 * 90.00058 * 7 6 5 9 9 O 1.21284 * 119.99639 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00202 * 180.02562 * 8 7 6 11 11 C 1.46931 * 120.63145 * 359.97034 * 10 8 7 12 12 C 1.53191 * 108.76527 * 126.40558 * 11 10 8 13 13 C 1.53046 * 109.30997 * 54.65907 * 12 11 10 14 14 C 1.53039 * 109.52798 * 298.61471 * 13 12 11 15 15 H 1.09006 * 109.49908 * 301.38992 * 14 13 12 16 16 C 1.50697 * 109.50029 * 181.32171 * 14 13 12 17 17 H 1.08004 * 120.00020 * 0.02562 * 16 14 13 18 18 C 1.37872 * 119.99914 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00308 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99856 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47151 * 90.00431 * 20 18 16 22 22 H 1.48498 * 109.47268 * 210.00459 * 20 18 16 23 23 H 1.48498 * 109.46988 * 330.00575 * 20 18 16 24 24 C 1.46919 * 120.63242 * 179.97438 * 10 8 7 25 25 C 1.38219 * 120.00126 * 180.27654 * 2 1 3 26 26 H 1.09001 * 109.46692 * 89.99637 * 1 2 3 27 27 H 1.08994 * 109.47369 * 209.99882 * 1 2 3 28 28 H 1.08993 * 109.46879 * 330.00346 * 1 2 3 29 29 H 1.07997 * 119.99896 * 0.02562 * 3 2 1 30 30 H 1.08008 * 119.99831 * 179.97438 * 4 3 2 31 31 H 1.08000 * 120.00326 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47602 * 329.99644 * 7 6 5 33 33 H 1.09004 * 109.46832 * 209.99847 * 7 6 5 34 34 H 1.08998 * 109.58959 * 246.20295 * 11 10 8 35 35 H 1.09003 * 109.58181 * 6.48778 * 11 10 8 36 36 H 1.08998 * 109.50939 * 294.70294 * 12 11 10 37 37 H 1.09003 * 109.48831 * 174.59930 * 12 11 10 38 38 H 1.09002 * 109.46115 * 178.59924 * 13 12 11 39 39 H 1.09004 * 109.45806 * 58.62809 * 13 12 11 40 40 H 0.96998 * 119.99864 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.59005 * 113.79701 * 24 10 8 42 42 H 1.09002 * 109.70256 * 353.43937 * 24 10 8 43 43 H 1.08001 * 119.99967 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 4.3342 -2.5020 -0.0002 8 6 4.5859 -2.9375 1.4205 9 8 4.1926 -2.2549 2.3426 10 7 5.2490 -4.0848 1.6662 11 6 5.7321 -4.9220 0.5596 12 6 7.2295 -5.1800 0.7541 13 6 7.4638 -5.7782 2.1432 14 6 7.0021 -4.7853 3.2123 15 1 7.5503 -3.8498 3.1010 16 6 7.2628 -5.3615 4.5801 17 1 7.7133 -6.3382 4.6777 18 6 6.9273 -4.6414 5.7069 19 7 6.3792 -3.4518 5.5881 20 14 7.2499 -5.3560 7.4025 21 1 8.6073 -4.9599 7.8565 22 1 6.2379 -4.8390 8.3583 23 1 7.1612 -6.8370 7.3405 24 6 5.5025 -4.5222 3.0456 25 6 2.1981 -1.1970 -0.0058 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6584 2.1326 0.0004 30 1 4.1205 2.1327 0.0001 31 1 5.3517 0.0000 0.0005 32 1 5.2863 -2.3716 -0.5144 33 1 3.7448 -3.2616 -0.5140 34 1 5.1949 -5.8704 0.5574 35 1 5.5678 -4.4069 -0.3869 36 1 7.7752 -4.2405 0.6659 37 1 7.5801 -5.8778 -0.0064 38 1 8.5257 -5.9859 2.2748 39 1 6.8979 -6.7049 2.2395 40 1 6.1429 -2.9454 6.3809 41 1 4.9467 -5.4379 3.2467 42 1 5.1887 -3.7440 3.7414 43 1 1.6581 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397743169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:47 Heat of formation + Delta-G solvation = -29.176290 kcal Electronic energy + Delta-G solvation = -22708.596284 eV Core-core repulsion = 19524.631196 eV Total energy + Delta-G solvation = -3183.965088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.83353 -38.78439 -36.62258 -33.54136 -33.16400 -31.93151 -31.64830 -29.82803 -27.83630 -26.75486 -25.02441 -24.25088 -22.06372 -21.78771 -20.89884 -19.52560 -18.11135 -16.73894 -16.39030 -16.02921 -15.54982 -15.18671 -14.63312 -14.41671 -14.27611 -13.73718 -13.67054 -13.29092 -13.06163 -12.87193 -12.67280 -12.56846 -12.43006 -12.14585 -11.92324 -11.71628 -11.54575 -11.03103 -10.97845 -10.86795 -10.82370 -10.48916 -10.36787 -10.22049 -9.87730 -9.25990 -9.09812 -8.92881 -8.59988 -8.42376 -8.38494 -7.69719 -5.98084 -4.07252 1.48863 1.54906 3.30072 3.32924 3.38949 3.41117 3.68636 4.03107 4.44042 4.77881 4.87938 4.99322 5.14806 5.22580 5.30416 5.32722 5.35592 5.39720 5.51737 5.55427 5.62206 5.64265 5.68556 5.77155 5.82585 5.99856 6.15664 6.20655 6.23849 6.31890 6.58946 6.61224 6.67496 6.69115 6.76758 6.86782 6.98645 7.14520 7.19307 7.33111 7.66412 7.89466 8.02159 8.30597 8.40946 8.93198 8.99253 9.58483 11.07073 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.004119 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.148521 B = 6795.826280 C = 7618.145700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.052 4.052 7 C -0.105 4.105 8 C 0.506 3.494 9 O -0.529 6.529 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.113 3.887 25 C -0.107 4.107 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.263 0.737 41 H 0.040 0.960 42 H 0.122 0.878 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 3.786 -15.522 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.052 4.052 7 C -0.145 4.145 8 C 0.292 3.708 9 O -0.405 6.405 10 N -0.342 5.342 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.007 4.007 25 C -0.125 4.125 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.140 0.860 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.111 4.296 -14.893 17.054 hybrid contribution 0.330 -0.455 0.970 1.121 sum -6.782 3.841 -13.923 15.956 Atomic orbital electron populations 1.20759 0.91455 1.02741 1.01889 1.19826 0.95843 0.93163 1.00118 1.20942 0.94270 0.97230 1.02022 1.21043 0.94266 0.97786 1.00288 1.20974 0.99770 0.92015 1.00035 1.19332 0.93479 0.93896 0.98511 1.20764 1.01511 0.95669 0.96532 1.20294 0.78876 0.81225 0.90371 1.90736 1.50749 1.53045 1.45959 1.48513 1.54933 1.21712 1.09049 1.21641 0.95376 0.95027 0.89514 1.21947 0.95266 1.00974 0.99031 1.21626 1.00326 0.99348 0.93531 1.18955 0.91530 0.94558 0.92853 0.95396 1.21080 1.41426 1.03419 0.90148 0.92401 1.25053 0.94900 0.94792 0.99260 1.69891 1.41117 1.11208 1.29497 0.86604 0.77971 0.79298 0.84197 1.20682 1.21185 1.19903 1.22240 0.98911 1.00481 0.79104 1.20826 0.93428 0.97487 1.00751 0.91487 0.91597 0.91720 0.86497 0.86258 0.86300 0.88486 0.88663 0.92105 0.91140 0.92169 0.92253 0.93063 0.93213 0.92657 0.94191 0.85995 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.09 -1.17 5.88 -104.62 -0.62 -1.78 16 3 C -0.13 -1.60 9.70 -39.58 -0.38 -1.98 16 4 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 5 C -0.11 -1.61 9.70 -39.58 -0.38 -2.00 16 6 C -0.05 -0.78 4.37 -104.63 -0.46 -1.24 16 7 C -0.10 -1.50 4.18 -29.03 -0.12 -1.62 16 8 C 0.51 10.11 7.69 -10.99 -0.08 10.02 16 9 O -0.53 -13.17 15.45 5.55 0.09 -13.08 16 10 N -0.61 -12.12 2.97 -172.79 -0.51 -12.64 16 11 C 0.11 1.63 6.34 -3.71 -0.02 1.61 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C -0.11 -2.19 5.11 -26.69 -0.14 -2.32 16 14 C 0.04 1.00 2.25 -91.67 -0.21 0.79 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 16 C -0.52 -14.25 8.56 -34.44 -0.29 -14.54 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -26.01 11.40 55.43 0.63 -25.38 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 24 C 0.11 2.76 5.40 -3.73 -0.02 2.74 16 25 C -0.11 -1.53 9.36 -39.58 -0.37 -1.90 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.10 1.19 7.64 -51.93 -0.40 0.79 16 33 H 0.10 1.11 7.88 -51.93 -0.41 0.70 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.12 3.51 5.13 -51.93 -0.27 3.24 16 43 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 346.84 15.07 5.23 5.23 Total: -1.00 -32.65 346.84 -9.82 -42.46 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.84 Total: 2.51 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -3.39 Total: -15.51 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.12 Total: -38.02 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.65 -9.82 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397743169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.287 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds