Wall clock time and date at job start Tue Mar 31 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38261 * 120.00257 * 2 1 4 4 C 1.38208 * 120.00000 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00475 * 0.02742 * 4 3 2 6 6 C 1.38215 * 119.99560 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99603 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47341 * 90.00058 * 7 6 5 9 9 O 1.21284 * 119.99639 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00202 * 180.02562 * 8 7 6 11 11 C 1.46931 * 120.63145 * 359.97034 * 10 8 7 12 12 C 1.53191 * 108.76527 * 126.40558 * 11 10 8 13 13 C 1.53046 * 109.30997 * 54.65907 * 12 11 10 14 14 C 1.53039 * 109.52798 * 298.61471 * 13 12 11 15 15 H 1.09006 * 109.49908 * 301.38992 * 14 13 12 16 16 C 1.50697 * 109.50029 * 181.32171 * 14 13 12 17 17 H 1.08004 * 120.00020 * 0.02562 * 16 14 13 18 18 C 1.37872 * 119.99914 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00308 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99856 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47151 * 90.00431 * 20 18 16 22 22 H 1.48498 * 109.47268 * 210.00459 * 20 18 16 23 23 H 1.48498 * 109.46988 * 330.00575 * 20 18 16 24 24 C 1.46919 * 120.63242 * 179.97438 * 10 8 7 25 25 C 1.38219 * 120.00126 * 180.27654 * 2 1 3 26 26 H 1.09001 * 109.46692 * 89.99637 * 1 2 3 27 27 H 1.08994 * 109.47369 * 209.99882 * 1 2 3 28 28 H 1.08993 * 109.46879 * 330.00346 * 1 2 3 29 29 H 1.07997 * 119.99896 * 0.02562 * 3 2 1 30 30 H 1.08008 * 119.99831 * 179.97438 * 4 3 2 31 31 H 1.08000 * 120.00326 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47602 * 329.99644 * 7 6 5 33 33 H 1.09004 * 109.46832 * 209.99847 * 7 6 5 34 34 H 1.08998 * 109.58959 * 246.20295 * 11 10 8 35 35 H 1.09003 * 109.58181 * 6.48778 * 11 10 8 36 36 H 1.08998 * 109.50939 * 294.70294 * 12 11 10 37 37 H 1.09003 * 109.48831 * 174.59930 * 12 11 10 38 38 H 1.09002 * 109.46115 * 178.59924 * 13 12 11 39 39 H 1.09004 * 109.45806 * 58.62809 * 13 12 11 40 40 H 0.96998 * 119.99864 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.59005 * 113.79701 * 24 10 8 42 42 H 1.09002 * 109.70256 * 353.43937 * 24 10 8 43 43 H 1.08001 * 119.99967 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 4.3342 -2.5020 -0.0002 8 6 4.5859 -2.9375 1.4205 9 8 4.1926 -2.2549 2.3426 10 7 5.2490 -4.0848 1.6662 11 6 5.7321 -4.9220 0.5596 12 6 7.2295 -5.1800 0.7541 13 6 7.4638 -5.7782 2.1432 14 6 7.0021 -4.7853 3.2123 15 1 7.5503 -3.8498 3.1010 16 6 7.2628 -5.3615 4.5801 17 1 7.7133 -6.3382 4.6777 18 6 6.9273 -4.6414 5.7069 19 7 6.3792 -3.4518 5.5881 20 14 7.2499 -5.3560 7.4025 21 1 8.6073 -4.9599 7.8565 22 1 6.2379 -4.8390 8.3583 23 1 7.1612 -6.8370 7.3405 24 6 5.5025 -4.5222 3.0456 25 6 2.1981 -1.1970 -0.0058 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6584 2.1326 0.0004 30 1 4.1205 2.1327 0.0001 31 1 5.3517 0.0000 0.0005 32 1 5.2863 -2.3716 -0.5144 33 1 3.7448 -3.2616 -0.5140 34 1 5.1949 -5.8704 0.5574 35 1 5.5678 -4.4069 -0.3869 36 1 7.7752 -4.2405 0.6659 37 1 7.5801 -5.8778 -0.0064 38 1 8.5257 -5.9859 2.2748 39 1 6.8979 -6.7049 2.2395 40 1 6.1429 -2.9454 6.3809 41 1 4.9467 -5.4379 3.2467 42 1 5.1887 -3.7440 3.7414 43 1 1.6581 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397743169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:47 Heat of formation + Delta-G solvation = -47.496059 kcal Electronic energy + Delta-G solvation = -22709.390689 eV Core-core repulsion = 19524.631196 eV Total energy + Delta-G solvation = -3184.759493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20850 -40.00115 -38.25109 -35.33400 -34.37977 -33.44070 -32.84322 -31.54780 -29.06738 -27.69275 -26.92751 -25.80863 -23.45820 -23.05360 -22.11107 -21.05507 -19.62238 -18.54182 -17.83433 -17.40986 -16.75500 -16.63559 -16.46219 -15.75441 -15.54094 -15.17978 -14.90355 -14.57324 -14.49807 -14.21630 -14.03437 -13.86951 -13.78720 -13.48434 -13.18376 -12.90296 -12.74037 -12.73667 -12.68060 -12.27183 -12.23486 -11.97162 -11.83976 -11.72377 -11.62495 -11.11122 -10.93912 -10.63724 -10.51128 -9.65857 -9.44659 -9.36447 -8.12153 -6.29681 0.44353 0.52225 1.38612 1.39689 1.50513 1.80060 2.27452 2.41558 2.90044 3.16388 3.68679 3.88389 3.92607 4.06663 4.13356 4.20180 4.25413 4.36685 4.39358 4.47726 4.59837 4.62159 4.63796 4.77445 4.82313 4.84457 4.85135 4.90155 4.99786 5.11519 5.20690 5.26957 5.30260 5.31993 5.38283 5.54826 5.57759 5.66745 5.68908 5.72237 5.90465 6.00660 6.17034 6.32920 6.73826 6.84015 7.39147 7.43181 8.90994 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.004119 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.148521 B = 6795.826280 C = 7618.145700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.134 4.134 6 C -0.073 4.073 7 C -0.089 4.089 8 C 0.497 3.503 9 O -0.591 6.591 10 N -0.613 5.613 11 C 0.101 3.899 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.039 3.961 15 H -0.016 1.016 16 C -0.537 4.537 17 H 0.062 0.938 18 C 0.009 3.991 19 N -0.916 5.916 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.126 3.874 25 C -0.125 4.125 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.051 0.949 37 H 0.105 0.895 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.259 0.741 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 2.799 -17.869 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.074 4.074 7 C -0.129 4.129 8 C 0.286 3.714 9 O -0.471 6.471 10 N -0.345 5.345 11 C -0.020 4.020 12 C -0.165 4.165 13 C -0.144 4.144 14 C 0.019 3.981 15 H 0.003 0.997 16 C -0.576 4.576 17 H 0.080 0.920 18 C -0.190 4.190 19 N -0.555 5.555 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.185 1.185 24 C 0.003 3.997 25 C -0.143 4.143 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.443 3.271 -17.291 19.107 hybrid contribution 0.435 -0.117 1.695 1.754 sum -7.008 3.154 -15.596 17.387 Atomic orbital electron populations 1.20807 0.89318 1.03218 1.03283 1.20263 0.97603 0.92949 0.99097 1.21319 0.94281 0.98315 1.01164 1.21377 0.94947 0.98229 0.99718 1.21205 1.00160 0.92780 1.01033 1.19531 0.94101 0.94296 0.99443 1.20753 1.03414 0.96278 0.92423 1.21347 0.77440 0.80270 0.92294 1.90703 1.53162 1.54816 1.48450 1.48557 1.54911 1.22531 1.08473 1.22055 0.94849 0.95701 0.89406 1.21920 0.95839 1.01395 0.97353 1.21521 1.00113 0.98238 0.94502 1.18888 0.91371 0.93866 0.93929 0.99740 1.21553 1.40784 1.03500 0.91738 0.91996 1.25907 0.94725 0.95031 1.03355 1.70103 1.42552 1.12781 1.30065 0.85568 0.77762 0.79115 0.79320 1.20020 1.21430 1.18478 1.21615 0.98321 0.98322 0.81446 1.21093 0.93479 0.98530 1.01232 0.89525 0.91725 0.90653 0.83953 0.84275 0.86185 0.85869 0.85168 0.90212 0.86631 0.93008 0.87672 0.93126 0.92542 0.93242 0.94939 0.90891 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 10.01 71.24 0.71 -1.25 16 2 C -0.10 -2.46 5.88 -19.86 -0.12 -2.58 16 3 C -0.13 -3.18 9.70 22.27 0.22 -2.96 16 4 C -0.12 -3.21 10.05 22.27 0.22 -2.98 16 5 C -0.13 -3.90 9.70 22.27 0.22 -3.68 16 6 C -0.07 -2.17 4.37 -19.87 -0.09 -2.25 16 7 C -0.09 -2.39 4.18 29.10 0.12 -2.27 16 8 C 0.50 19.99 7.69 87.66 0.67 20.67 16 9 O -0.59 -30.92 15.45 -3.04 -0.05 -30.97 16 10 N -0.61 -24.26 2.97 -818.98 -2.43 -26.69 16 11 C 0.10 2.72 6.34 86.36 0.55 3.27 16 12 C -0.13 -3.61 6.08 30.67 0.19 -3.42 16 13 C -0.11 -4.08 5.11 30.62 0.16 -3.92 16 14 C 0.04 1.98 2.25 -11.48 -0.03 1.95 16 15 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 16 C -0.54 -30.10 8.56 25.60 0.22 -29.88 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 18 C 0.01 0.52 5.30 84.65 0.45 0.97 16 19 N -0.92 -57.11 11.40 21.45 0.24 -56.87 16 20 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 C 0.13 6.38 5.40 86.35 0.47 6.85 16 25 C -0.13 -3.48 9.36 22.27 0.21 -3.28 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.17 8.09 -2.39 -0.02 1.15 16 28 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 29 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 30 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.12 2.64 7.64 -2.39 -0.02 2.62 16 33 H 0.13 2.55 7.88 -2.38 -0.02 2.53 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.12 2.11 5.93 -2.39 -0.01 2.10 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 4.48 5.13 -2.39 -0.01 4.47 16 43 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -77.55 346.84 4.93 -72.62 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.98 Total: 19.67 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.17 Total: -24.79 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -2.19 Total: -83.56 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -77.55 4.93 -72.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397743169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.121 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds