Wall clock time and date at job start Tue Mar 31 2020 07:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46716 * 2 1 4 4 C 1.53002 * 109.47218 * 62.76329 * 3 2 1 5 5 C 1.52999 * 109.46654 * 182.75881 * 3 2 1 6 6 N 1.46493 * 109.47540 * 302.75544 * 3 2 1 7 7 C 1.46503 * 119.99942 * 116.05176 * 6 3 2 8 8 C 1.50702 * 109.46866 * 84.86337 * 7 6 3 9 9 H 1.08002 * 119.99852 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00290 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99487 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00041 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47169 * 60.00229 * 12 10 8 14 14 H 1.48502 * 109.46875 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47387 * 299.99596 * 12 10 8 16 16 C 1.34774 * 120.00413 * 296.06110 * 6 3 2 17 17 O 1.21283 * 119.99634 * 5.34664 * 16 6 3 18 18 C 1.50701 * 120.00391 * 185.35606 * 16 6 3 19 19 F 1.39901 * 110.43266 * 301.86047 * 18 16 6 20 20 C 1.54812 * 110.48825 * 179.16905 * 18 16 6 21 21 C 1.54998 * 102.09235 * 220.43916 * 20 18 16 22 22 O 1.44381 * 103.48525 * 37.02785 * 21 20 18 23 23 C 1.43744 * 106.97912 * 319.93453 * 22 21 20 24 24 H 1.09000 * 109.46991 * 173.61062 * 1 2 3 25 25 H 1.08998 * 109.47035 * 293.60391 * 1 2 3 26 26 H 1.08995 * 109.47691 * 53.60556 * 1 2 3 27 27 H 1.08995 * 109.47260 * 120.00224 * 2 1 3 28 28 H 1.08998 * 109.46866 * 240.00381 * 2 1 3 29 29 H 1.08999 * 109.47119 * 64.32319 * 4 3 2 30 30 H 1.08997 * 109.46886 * 184.32535 * 4 3 2 31 31 H 1.09003 * 109.46682 * 304.32157 * 4 3 2 32 32 H 1.09006 * 109.47429 * 59.13199 * 5 3 2 33 33 H 1.09002 * 109.46989 * 179.13353 * 5 3 2 34 34 H 1.09000 * 109.47386 * 299.13322 * 5 3 2 35 35 H 1.09000 * 109.47385 * 204.86398 * 7 6 3 36 36 H 1.09000 * 109.47132 * 324.86797 * 7 6 3 37 37 H 0.97000 * 119.99261 * 179.97438 * 11 10 8 38 38 H 1.08992 * 110.90872 * 338.64137 * 20 18 16 39 39 H 1.09001 * 110.90166 * 102.24796 * 20 18 16 40 40 H 1.08995 * 110.61841 * 278.52820 * 21 20 18 41 41 H 1.08997 * 110.74914 * 155.59169 * 21 20 18 42 42 H 1.08996 * 109.87978 * 267.09500 * 23 22 21 43 43 H 1.08997 * 109.87873 * 145.93630 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5874 2.1434 1.2826 5 6 3.5683 1.4431 -0.0694 6 7 1.4981 2.1520 -1.1615 7 6 0.5933 3.2881 -0.9693 8 6 1.4005 4.5429 -0.7571 9 1 2.4796 4.4984 -0.7643 10 6 0.7615 5.7474 -0.5528 11 7 -0.5525 5.8014 -0.5437 12 14 1.7622 7.3028 -0.2905 13 1 2.6174 7.5476 -1.4796 14 1 0.8450 8.4544 -0.0956 15 1 2.6194 7.1432 0.9115 16 6 1.8319 1.7597 -2.4069 17 8 2.5016 0.7616 -2.5691 18 6 1.3733 2.5611 -3.5979 19 9 -0.0226 2.6528 -3.6166 20 6 1.8954 1.9281 -4.9106 21 6 2.2972 3.1770 -5.7360 22 8 2.8392 4.0757 -4.7445 23 6 2.0058 3.9662 -3.5784 24 1 -0.3633 -1.0213 -0.1144 25 1 -0.3633 0.4115 0.9417 26 1 -0.3634 0.6097 -0.8271 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.0524 1.6622 2.1430 30 1 1.8844 3.1916 1.2479 31 1 0.5031 2.0757 1.3704 32 1 3.8911 0.9301 -0.9755 33 1 3.9310 2.4709 -0.0850 34 1 3.9719 0.9286 0.8027 35 1 -0.0353 3.4054 -1.8521 36 1 -0.0351 3.1086 -0.0970 37 1 -1.0020 6.6488 -0.3996 38 1 2.7606 1.2935 -4.7192 39 1 1.1068 1.3674 -5.4125 40 1 1.4233 3.6171 -6.2162 41 1 3.0540 2.9224 -6.4779 42 1 1.2240 4.7250 -3.6089 43 1 2.6091 4.0886 -2.6789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117507639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:00 Heat of formation + Delta-G solvation = -127.120244 kcal Electronic energy + Delta-G solvation = -26010.408474 eV Core-core repulsion = 22391.426993 eV Total energy + Delta-G solvation = -3618.981481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.168 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.50784 -39.95857 -38.38763 -36.41503 -33.79416 -32.11205 -31.20457 -30.02540 -28.64308 -27.86324 -26.25707 -23.48200 -23.14385 -22.58940 -22.14900 -19.92071 -18.05805 -16.80923 -16.70330 -16.45008 -15.90624 -15.18606 -14.75081 -14.64682 -14.40617 -14.27216 -13.96158 -13.86971 -13.46878 -12.79516 -12.70482 -12.58936 -12.27795 -12.05841 -11.86580 -11.57463 -11.50207 -11.30213 -11.23198 -11.17377 -11.07509 -11.03803 -10.70371 -10.59098 -10.35668 -10.34026 -10.18427 -10.03412 -9.63727 -9.38474 -8.85304 -8.53257 -7.76262 -6.20872 -4.27661 3.03875 3.22637 3.28134 3.31583 3.58315 4.20196 4.29388 4.49574 4.77461 4.91362 5.11160 5.18605 5.26763 5.34725 5.43743 5.56860 5.57029 5.76129 5.80669 5.93688 5.98628 6.04573 6.15922 6.18296 6.22371 6.29153 6.34601 6.42183 6.48233 6.57916 6.59932 6.68799 6.80923 6.86882 7.04551 7.11355 7.28022 7.51696 7.70214 8.00443 8.24489 8.67419 8.82851 9.37682 10.85174 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.010118 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.549770 B = 2766.622577 C = 4158.464310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.178 3.822 4 C -0.153 4.153 5 C -0.161 4.161 6 N -0.569 5.569 7 C 0.211 3.789 8 C -0.539 4.539 9 H 0.062 0.938 10 C 0.070 3.930 11 N -0.884 5.884 12 Si 0.888 3.112 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.509 3.491 17 O -0.551 6.551 18 C 0.080 3.920 19 F -0.181 7.181 20 C -0.165 4.165 21 C 0.045 3.955 22 O -0.376 6.376 23 C 0.040 3.960 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.266 0.734 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -6.854 -2.969 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.094 3.906 4 C -0.210 4.210 5 C -0.219 4.219 6 N -0.298 5.298 7 C 0.092 3.908 8 C -0.577 4.577 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.521 5.521 12 Si 0.716 3.284 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.201 1.201 16 C 0.294 3.706 17 O -0.432 6.432 18 C 0.058 3.942 19 F -0.162 7.162 20 C -0.203 4.203 21 C -0.031 4.031 22 O -0.295 6.295 23 C -0.037 4.037 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.173 -7.075 -2.996 8.313 hybrid contribution -0.059 0.958 0.309 1.008 sum 3.114 -6.117 -2.687 7.371 Atomic orbital electron populations 1.21747 0.95980 1.00600 1.02142 1.21930 0.96158 0.96563 1.02422 1.20265 0.93127 0.91088 0.86139 1.22165 1.01680 1.02837 0.94325 1.22190 0.94944 1.02298 1.02445 1.48387 1.45808 1.32153 1.03484 1.19948 0.89043 0.81722 1.00094 1.21361 0.93257 0.92033 1.51074 0.91987 1.24884 0.94819 0.98851 0.94829 1.69919 1.07313 1.26688 1.48174 0.86697 0.80066 0.82555 0.79128 1.19805 1.21167 1.20096 1.20169 0.81087 0.84743 0.84563 1.90546 1.41151 1.25827 1.85671 1.22347 0.77335 0.98599 0.95942 1.92852 1.29133 1.97128 1.97069 1.23632 1.03990 0.99198 0.93523 1.23546 0.98959 0.88482 0.92152 1.88906 1.52441 1.63786 1.24378 1.24178 0.96556 0.92997 0.89980 0.93711 0.92824 0.92386 0.92134 0.90407 0.93063 0.89419 0.91968 0.90842 0.92372 0.92758 0.92407 0.93809 0.92415 0.87289 0.89081 0.92044 0.88715 0.89282 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.37 37.16 0.35 -2.02 16 2 C -0.13 -2.18 4.79 -26.73 -0.13 -2.31 16 3 C 0.18 3.20 0.72 -131.82 -0.10 3.11 16 4 C -0.15 -2.67 7.13 37.16 0.27 -2.40 16 5 C -0.16 -2.76 8.33 37.16 0.31 -2.45 16 6 N -0.57 -11.45 1.41 -160.18 -0.23 -11.67 16 7 C 0.21 4.78 3.96 -5.19 -0.02 4.76 16 8 C -0.54 -12.90 5.38 -34.44 -0.19 -13.08 16 9 H 0.06 1.50 7.05 -52.49 -0.37 1.13 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.88 -23.43 13.29 55.43 0.74 -22.69 16 12 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 13 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 C 0.51 10.31 6.02 -10.99 -0.07 10.25 16 17 O -0.55 -11.42 11.71 5.56 0.07 -11.35 16 18 C 0.08 1.52 1.11 -90.24 -0.10 1.42 16 19 F -0.18 -3.70 14.50 2.25 0.03 -3.67 16 20 C -0.17 -2.61 6.33 -24.72 -0.16 -2.77 16 21 C 0.05 0.66 7.72 38.21 0.29 0.96 16 22 O -0.38 -7.00 11.52 -35.23 -0.41 -7.41 16 23 C 0.04 0.79 5.44 37.73 0.21 1.00 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.82 6.74 -51.93 -0.35 0.47 16 26 H 0.06 1.06 7.21 -51.93 -0.37 0.69 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.40 6.36 -51.93 -0.33 1.07 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.73 6.44 -51.93 -0.33 1.40 16 31 H 0.06 1.11 5.30 -51.93 -0.27 0.84 16 32 H 0.07 1.35 6.10 -51.93 -0.32 1.03 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.41 4.94 -51.93 -0.26 1.16 16 36 H 0.04 1.05 6.17 -51.93 -0.32 0.73 16 37 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.11 1.77 6.88 -51.93 -0.36 1.41 16 39 H 0.09 1.27 8.12 -51.93 -0.42 0.85 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 1.90 8.03 -51.93 -0.42 1.48 16 43 H 0.12 2.67 5.24 -51.93 -0.27 2.40 16 LS Contribution 324.90 15.07 4.90 4.90 Total: -1.00 -26.35 324.90 -5.84 -32.19 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.49 Total: 6.74 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 0.57 Total: -1.88 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.51 Total: -34.36 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.34 Total: -18.76 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.03 Total: -3.67 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.35 -5.84 -32.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117507639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.927 kcal (2) G-P(sol) polarization free energy of solvation -26.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds