Wall clock time and date at job start Tue Mar 31 2020 07:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46716 * 2 1 4 4 C 1.53002 * 109.47218 * 62.76329 * 3 2 1 5 5 C 1.52999 * 109.46654 * 182.75881 * 3 2 1 6 6 N 1.46493 * 109.47540 * 302.75544 * 3 2 1 7 7 C 1.46503 * 119.99942 * 116.05176 * 6 3 2 8 8 C 1.50702 * 109.46866 * 84.86337 * 7 6 3 9 9 H 1.08002 * 119.99852 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00290 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99487 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00041 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47169 * 60.00229 * 12 10 8 14 14 H 1.48502 * 109.46875 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47387 * 299.99596 * 12 10 8 16 16 C 1.34774 * 120.00413 * 296.06110 * 6 3 2 17 17 O 1.21283 * 119.99634 * 5.34664 * 16 6 3 18 18 C 1.50701 * 120.00391 * 185.35606 * 16 6 3 19 19 F 1.39901 * 110.43266 * 301.86047 * 18 16 6 20 20 C 1.54812 * 110.48825 * 179.16905 * 18 16 6 21 21 C 1.54998 * 102.09235 * 220.43916 * 20 18 16 22 22 O 1.44381 * 103.48525 * 37.02785 * 21 20 18 23 23 C 1.43744 * 106.97912 * 319.93453 * 22 21 20 24 24 H 1.09000 * 109.46991 * 173.61062 * 1 2 3 25 25 H 1.08998 * 109.47035 * 293.60391 * 1 2 3 26 26 H 1.08995 * 109.47691 * 53.60556 * 1 2 3 27 27 H 1.08995 * 109.47260 * 120.00224 * 2 1 3 28 28 H 1.08998 * 109.46866 * 240.00381 * 2 1 3 29 29 H 1.08999 * 109.47119 * 64.32319 * 4 3 2 30 30 H 1.08997 * 109.46886 * 184.32535 * 4 3 2 31 31 H 1.09003 * 109.46682 * 304.32157 * 4 3 2 32 32 H 1.09006 * 109.47429 * 59.13199 * 5 3 2 33 33 H 1.09002 * 109.46989 * 179.13353 * 5 3 2 34 34 H 1.09000 * 109.47386 * 299.13322 * 5 3 2 35 35 H 1.09000 * 109.47385 * 204.86398 * 7 6 3 36 36 H 1.09000 * 109.47132 * 324.86797 * 7 6 3 37 37 H 0.97000 * 119.99261 * 179.97438 * 11 10 8 38 38 H 1.08992 * 110.90872 * 338.64137 * 20 18 16 39 39 H 1.09001 * 110.90166 * 102.24796 * 20 18 16 40 40 H 1.08995 * 110.61841 * 278.52820 * 21 20 18 41 41 H 1.08997 * 110.74914 * 155.59169 * 21 20 18 42 42 H 1.08996 * 109.87978 * 267.09500 * 23 22 21 43 43 H 1.08997 * 109.87873 * 145.93630 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5874 2.1434 1.2826 5 6 3.5683 1.4431 -0.0694 6 7 1.4981 2.1520 -1.1615 7 6 0.5933 3.2881 -0.9693 8 6 1.4005 4.5429 -0.7571 9 1 2.4796 4.4984 -0.7643 10 6 0.7615 5.7474 -0.5528 11 7 -0.5525 5.8014 -0.5437 12 14 1.7622 7.3028 -0.2905 13 1 2.6174 7.5476 -1.4796 14 1 0.8450 8.4544 -0.0956 15 1 2.6194 7.1432 0.9115 16 6 1.8319 1.7597 -2.4069 17 8 2.5016 0.7616 -2.5691 18 6 1.3733 2.5611 -3.5979 19 9 -0.0226 2.6528 -3.6166 20 6 1.8954 1.9281 -4.9106 21 6 2.2972 3.1770 -5.7360 22 8 2.8392 4.0757 -4.7445 23 6 2.0058 3.9662 -3.5784 24 1 -0.3633 -1.0213 -0.1144 25 1 -0.3633 0.4115 0.9417 26 1 -0.3634 0.6097 -0.8271 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.0524 1.6622 2.1430 30 1 1.8844 3.1916 1.2479 31 1 0.5031 2.0757 1.3704 32 1 3.8911 0.9301 -0.9755 33 1 3.9310 2.4709 -0.0850 34 1 3.9719 0.9286 0.8027 35 1 -0.0353 3.4054 -1.8521 36 1 -0.0351 3.1086 -0.0970 37 1 -1.0020 6.6488 -0.3996 38 1 2.7606 1.2935 -4.7192 39 1 1.1068 1.3674 -5.4125 40 1 1.4233 3.6171 -6.2162 41 1 3.0540 2.9224 -6.4779 42 1 1.2240 4.7250 -3.6089 43 1 2.6091 4.0886 -2.6789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117507639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:59 Heat of formation + Delta-G solvation = -141.154548 kcal Electronic energy + Delta-G solvation = -26011.017047 eV Core-core repulsion = 22391.426993 eV Total energy + Delta-G solvation = -3619.590054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.09539 -41.51314 -39.81691 -37.96797 -35.52813 -33.87848 -32.61100 -31.38283 -30.08321 -29.58232 -27.83456 -24.99147 -24.84108 -24.03886 -23.55230 -21.40360 -19.60417 -18.68149 -18.29690 -17.94848 -17.43175 -16.65990 -16.43650 -16.23562 -15.95838 -15.74493 -15.49883 -15.34969 -14.94951 -14.30457 -14.21340 -14.16968 -13.88019 -13.61292 -13.34324 -13.08614 -12.93561 -12.82160 -12.77573 -12.68100 -12.59248 -12.51555 -12.25965 -12.17121 -11.97664 -11.79896 -11.74952 -11.57302 -11.33251 -10.86097 -10.57370 -10.32761 -9.42371 -8.15483 -6.26240 1.40916 1.42679 1.46476 1.51188 2.04572 2.42285 2.81672 3.04837 3.15735 3.27302 3.39729 3.81978 3.91081 4.01773 4.06259 4.17445 4.24847 4.41449 4.60892 4.61926 4.68316 4.71717 4.76389 4.79459 4.84350 4.92103 4.96295 4.97629 5.01622 5.05736 5.17117 5.23560 5.28916 5.38247 5.47177 5.58934 5.70818 5.73191 5.90163 6.08758 6.53829 6.82914 7.13907 7.42076 8.89939 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.010118 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.549770 B = 2766.622577 C = 4158.464310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.166 3.834 4 C -0.145 4.145 5 C -0.153 4.153 6 N -0.570 5.570 7 C 0.230 3.770 8 C -0.527 4.527 9 H 0.057 0.943 10 C 0.030 3.970 11 N -0.915 5.915 12 Si 0.939 3.061 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.270 1.270 16 C 0.504 3.496 17 O -0.555 6.555 18 C 0.070 3.930 19 F -0.191 7.191 20 C -0.157 4.157 21 C 0.043 3.957 22 O -0.389 6.389 23 C 0.051 3.949 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.029 0.971 37 H 0.265 0.735 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.069 0.931 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 -7.867 -3.053 9.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.083 3.917 4 C -0.202 4.202 5 C -0.211 4.211 6 N -0.299 5.299 7 C 0.110 3.890 8 C -0.565 4.565 9 H 0.075 0.925 10 C -0.171 4.171 11 N -0.555 5.555 12 Si 0.765 3.235 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.195 1.195 16 C 0.289 3.711 17 O -0.437 6.437 18 C 0.049 3.951 19 F -0.172 7.172 20 C -0.195 4.195 21 C -0.033 4.033 22 O -0.309 6.309 23 C -0.027 4.027 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.149 0.851 42 H 0.087 0.913 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.203 -8.102 -3.081 9.634 hybrid contribution -0.354 1.209 0.311 1.297 sum 3.849 -6.894 -2.770 8.367 Atomic orbital electron populations 1.21705 0.95855 1.01267 1.01238 1.21872 0.96175 0.95238 1.03042 1.20582 0.93732 0.91971 0.85445 1.22076 1.01348 1.01428 0.95361 1.22118 0.94236 1.01565 1.03177 1.48374 1.45474 1.31637 1.04453 1.19523 0.88879 0.82270 0.98370 1.21448 0.92956 0.92519 1.49595 0.92486 1.25468 0.95451 1.01231 0.94979 1.70013 1.08529 1.27131 1.49782 0.85888 0.78838 0.79754 0.78988 1.19880 1.21202 1.19510 1.20370 0.81027 0.84822 0.84849 1.90536 1.41360 1.25968 1.85791 1.22539 0.76778 0.98366 0.97446 1.92828 1.29990 1.97168 1.97175 1.23651 1.04331 0.99689 0.91785 1.23869 1.00676 0.87097 0.91629 1.88882 1.52478 1.64901 1.24615 1.23809 0.95642 0.93102 0.90117 0.91746 0.92196 0.95298 0.89253 0.91891 0.89863 0.92088 0.92792 0.92158 0.93826 0.89755 0.94330 0.95294 0.92566 0.87494 0.86995 0.90712 0.85144 0.91330 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.37 71.98 0.67 -3.76 16 2 C -0.13 -3.88 4.79 30.59 0.15 -3.73 16 3 C 0.17 5.81 0.72 3.60 0.00 5.82 16 4 C -0.14 -4.91 7.13 71.98 0.51 -4.40 16 5 C -0.15 -5.05 8.33 71.98 0.60 -4.45 16 6 N -0.57 -23.14 1.41 -779.09 -1.10 -24.24 16 7 C 0.23 10.70 3.96 85.63 0.34 11.03 16 8 C -0.53 -25.74 5.38 25.60 0.14 -25.60 16 9 H 0.06 2.82 7.05 -2.91 -0.02 2.80 16 10 C 0.03 1.50 5.46 84.65 0.46 1.96 16 11 N -0.92 -49.57 13.29 21.45 0.28 -49.29 16 12 Si 0.94 41.11 29.54 68.60 2.03 43.14 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 C 0.50 20.44 6.02 87.66 0.53 20.97 16 17 O -0.56 -22.67 11.71 -3.04 -0.04 -22.71 16 18 C 0.07 2.69 1.11 -10.55 -0.01 2.68 16 19 F -0.19 -7.91 14.50 44.97 0.65 -7.26 16 20 C -0.16 -4.69 6.33 31.90 0.20 -4.49 16 21 C 0.04 1.16 7.72 72.67 0.56 1.72 16 22 O -0.39 -14.18 11.52 -148.98 -1.72 -15.89 16 23 C 0.05 2.05 5.44 72.35 0.39 2.45 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.75 6.74 -2.39 -0.02 1.74 16 26 H 0.03 1.04 7.21 -2.39 -0.02 1.02 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.16 6.36 -2.39 -0.02 2.15 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.40 6.44 -2.39 -0.02 2.38 16 31 H 0.05 1.90 5.30 -2.39 -0.01 1.89 16 32 H 0.06 2.15 6.10 -2.38 -0.01 2.13 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.04 1.96 4.94 -2.39 -0.01 1.95 16 36 H 0.03 1.43 6.17 -2.39 -0.01 1.42 16 37 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.11 3.27 6.88 -2.39 -0.02 3.26 16 39 H 0.11 2.87 8.12 -2.39 -0.02 2.85 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.07 3.03 8.03 -2.39 -0.02 3.01 16 43 H 0.10 4.56 5.24 -2.39 -0.01 4.54 16 Total: -1.00 -56.99 324.90 5.67 -51.32 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.01 Total: 24.72 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 4.55 Total: 0.21 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -0.81 Total: -73.53 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.75 Total: -38.60 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 0.65 Total: -7.26 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -56.99 5.67 -51.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117507639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.836 kcal (2) G-P(sol) polarization free energy of solvation -56.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds