Wall clock time and date at job start Tue Mar 31 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47088 * 2 1 4 4 H 1.08995 * 109.47032 * 305.47554 * 3 2 1 5 5 O 1.42898 * 109.46923 * 65.47254 * 3 2 1 6 6 C 1.53003 * 109.46929 * 185.47414 * 3 2 1 7 7 H 1.09005 * 109.45906 * 174.69841 * 6 3 2 8 8 C 1.53035 * 109.46155 * 294.67310 * 6 3 2 9 9 C 1.53120 * 109.27840 * 179.19533 * 8 6 3 10 10 C 1.53117 * 109.16287 * 302.35214 * 9 8 6 11 11 C 1.53035 * 109.28063 * 57.64719 * 10 9 8 12 12 N 1.46825 * 109.46452 * 54.72791 * 6 3 2 13 13 C 1.46896 * 110.98966 * 54.13876 * 12 6 3 14 14 C 1.52998 * 109.47287 * 195.03964 * 13 12 6 15 15 C 1.53003 * 109.47162 * 180.02562 * 14 13 12 16 16 S 1.80999 * 109.47007 * 179.97438 * 15 14 13 17 17 C 1.76195 * 99.99823 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00208 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99947 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00252 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00015 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47207 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46672 * 119.99871 * 21 19 17 24 24 H 1.48498 * 109.47083 * 239.99758 * 21 19 17 25 25 H 1.09001 * 109.47416 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47026 * 299.99531 * 1 2 3 27 27 H 1.08992 * 109.47681 * 59.99829 * 1 2 3 28 28 H 1.09011 * 109.46802 * 240.00127 * 2 1 3 29 29 H 1.08996 * 109.47431 * 120.00591 * 2 1 3 30 30 H 0.96704 * 113.99562 * 60.00300 * 5 3 2 31 31 H 1.09008 * 109.50066 * 59.26077 * 8 6 3 32 32 H 1.08994 * 109.50843 * 299.14216 * 8 6 3 33 33 H 1.09001 * 109.52305 * 182.44374 * 9 8 6 34 34 H 1.09003 * 109.52099 * 62.25120 * 9 8 6 35 35 H 1.09008 * 109.50447 * 297.71140 * 10 9 8 36 36 H 1.09000 * 109.50823 * 177.59531 * 10 9 8 37 37 H 1.09004 * 109.45868 * 60.84055 * 11 10 9 38 38 H 1.09002 * 109.46406 * 180.81660 * 11 10 9 39 39 H 1.09002 * 109.47176 * 315.03795 * 13 12 6 40 40 H 1.08998 * 109.47026 * 75.03467 * 13 12 6 41 41 H 1.09002 * 109.46875 * 300.00015 * 14 13 12 42 42 H 1.09000 * 109.46977 * 59.99781 * 14 13 12 43 43 H 1.08993 * 109.46850 * 299.99764 * 15 14 13 44 44 H 1.08998 * 109.46738 * 59.99756 * 15 14 13 45 45 H 0.97001 * 120.00372 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5988 1.9838 -0.8369 5 8 1.6714 2.0780 1.2257 6 6 3.5638 1.4447 -0.1376 7 1 3.9184 2.4711 -0.2323 8 6 4.1886 0.8017 1.1026 9 6 5.7123 0.7878 0.9515 10 6 6.0839 0.0294 -0.3256 11 6 5.4040 0.6947 -1.5244 12 7 3.9482 0.6823 -1.3321 13 6 3.2553 1.1878 -2.5246 14 6 3.3763 0.1656 -3.6565 15 6 2.6550 0.6925 -4.8988 16 16 2.7988 -0.5165 -6.2381 17 6 1.9061 0.3224 -7.5046 18 1 1.4739 1.2925 -7.3086 19 6 1.7584 -0.2636 -8.7541 20 7 2.2847 -1.4463 -8.9928 21 14 0.8114 0.6254 -10.0966 22 1 0.3233 1.9285 -9.5781 23 1 1.7041 0.8592 -11.2601 24 1 -0.3453 -0.2046 -10.5190 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0298 1.6486 2.0146 31 1 3.8239 -0.2204 1.2055 32 1 3.9159 1.3768 1.9873 33 1 6.1593 0.2916 1.8130 34 1 6.0813 1.8115 0.8876 35 1 5.7490 -1.0049 -0.2453 36 1 7.1652 0.0527 -0.4613 37 1 5.7499 1.7247 -1.6124 38 1 5.6549 0.1484 -2.4336 39 1 2.2027 1.3495 -2.2920 40 1 3.7074 2.1296 -2.8356 41 1 4.4288 0.0040 -3.8891 42 1 2.9241 -0.7761 -3.3454 43 1 1.6025 0.8544 -4.6664 44 1 3.1076 1.6341 -5.2096 45 1 2.1818 -1.8557 -9.8662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074991237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:51 Heat of formation + Delta-G solvation = -78.595206 kcal Electronic energy + Delta-G solvation = -21480.022505 eV Core-core repulsion = 18429.358403 eV Total energy + Delta-G solvation = -3050.664102 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.15542 -37.13360 -34.92454 -32.91951 -32.42225 -31.67224 -30.88898 -26.63256 -25.91537 -25.40082 -23.47400 -22.63189 -21.34978 -20.71864 -19.36915 -17.46405 -16.88296 -16.31960 -15.71417 -15.02240 -14.84999 -14.79339 -14.76988 -14.13849 -14.05406 -13.75586 -13.40965 -13.22357 -13.04635 -12.76285 -12.18103 -12.09260 -11.90457 -11.69334 -11.58793 -11.38667 -11.27589 -11.07965 -10.99910 -10.80816 -10.77062 -10.73669 -10.58893 -10.30930 -10.11283 -9.83624 -9.50405 -9.05345 -8.33483 -8.27359 -6.50886 -6.21691 -3.91485 3.21684 3.22869 3.30690 3.51591 3.79421 4.23857 4.27699 4.43752 4.54803 4.67077 4.82233 4.96135 5.02030 5.14417 5.14662 5.21120 5.30384 5.35518 5.42730 5.45566 5.48237 5.60130 5.62590 5.65517 5.70751 5.74127 5.78021 5.83067 5.92204 5.93981 5.97123 6.05052 6.13306 6.18246 6.22586 6.32938 6.38372 6.60668 6.77231 7.05962 7.07271 7.46385 7.62161 8.38199 9.24881 10.86536 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.021861 B = 0.003434 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.514029 B = 8151.512285 C = 8931.769459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.100 0.900 5 O -0.562 6.562 6 C 0.055 3.945 7 H 0.044 0.956 8 C -0.118 4.118 9 C -0.119 4.119 10 C -0.117 4.117 11 C 0.053 3.947 12 N -0.525 5.525 13 C 0.051 3.949 14 C -0.090 4.090 15 C -0.113 4.113 16 S -0.132 6.132 17 C -0.516 4.516 18 H 0.072 0.928 19 C 0.071 3.929 20 N -0.870 5.870 21 Si 0.917 3.083 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.370 0.630 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 4.143 21.717 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.049 3.951 4 H 0.117 0.883 5 O -0.367 6.367 6 C -0.054 4.054 7 H 0.062 0.938 8 C -0.155 4.155 9 C -0.156 4.156 10 C -0.155 4.155 11 C -0.075 4.075 12 N -0.251 5.251 13 C -0.078 4.078 14 C -0.129 4.129 15 C -0.262 4.262 16 S 0.096 5.904 17 C -0.664 4.664 18 H 0.090 0.910 19 C -0.138 4.138 20 N -0.505 5.505 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.217 0.783 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.177 2.913 21.226 21.829 hybrid contribution -0.585 2.218 -0.754 2.414 sum 3.593 5.131 20.472 21.409 Atomic orbital electron populations 1.21736 0.95760 1.01418 1.01888 1.22165 0.96020 0.96550 1.03899 1.22094 0.92158 0.93925 0.86953 0.88250 1.86600 1.76752 1.57554 1.15759 1.22256 0.95936 0.95625 0.91562 0.93845 1.21676 0.95796 1.01696 0.96347 1.21543 0.95620 1.00384 0.98088 1.21589 0.99496 1.00359 0.94017 1.22156 0.87088 0.99149 0.99128 1.61922 1.06788 1.53916 1.02432 1.22327 0.98936 0.96695 0.89812 1.21246 1.01005 0.98532 0.92131 1.23236 1.01642 1.02621 0.98718 1.84621 1.73104 1.26864 1.05787 1.22740 1.39091 1.06667 0.97889 0.90962 1.25009 0.95711 0.95072 0.97985 1.70032 1.42816 1.14786 1.22912 0.86127 0.79315 0.79458 0.80710 1.19618 1.20594 1.20556 0.92864 0.92742 0.92800 0.89042 0.91992 0.78257 0.90588 0.91726 0.91885 0.92446 0.90944 0.91654 0.95153 0.89805 0.90473 0.94863 0.91713 0.90814 0.92196 0.92433 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.81 37.16 0.36 -1.19 16 2 C -0.15 -1.51 4.95 -26.73 -0.13 -1.65 16 3 C 0.11 1.12 2.31 -26.73 -0.06 1.05 16 4 H 0.10 1.17 6.33 -51.93 -0.33 0.84 16 5 O -0.56 -5.69 12.79 -35.23 -0.45 -6.14 16 6 C 0.06 0.56 1.91 -67.73 -0.13 0.43 16 7 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 8 C -0.12 -0.95 4.69 -26.65 -0.13 -1.08 16 9 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 10 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 11 C 0.05 0.58 5.30 -3.83 -0.02 0.55 16 12 N -0.52 -6.01 3.49 -226.71 -0.79 -6.80 16 13 C 0.05 0.68 4.30 -3.83 -0.02 0.66 16 14 C -0.09 -1.46 5.25 -26.73 -0.14 -1.60 16 15 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 16 S -0.13 -3.46 21.44 -107.50 -2.30 -5.77 16 17 C -0.52 -14.89 9.50 30.94 0.29 -14.59 16 18 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 19 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 20 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 21 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.54 7.84 -51.93 -0.41 0.14 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.09 6.84 -51.92 -0.36 0.73 16 29 H 0.06 0.56 6.83 -51.93 -0.35 0.21 16 30 H 0.37 2.54 7.20 45.56 0.33 2.86 16 31 H 0.08 0.64 6.67 -51.92 -0.35 0.29 16 32 H 0.06 0.43 6.76 -51.93 -0.35 0.08 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.99 6.45 -51.93 -0.33 0.66 16 39 H 0.08 1.00 5.36 -51.93 -0.28 0.72 16 40 H 0.03 0.45 8.07 -51.93 -0.42 0.03 16 41 H 0.06 1.06 6.61 -51.93 -0.34 0.72 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 44 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -30.94 353.74 -10.07 -41.01 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.38 Total: 0.97 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -0.17 Total: -19.87 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: -0.06 Total: -32.16 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.45 Total: -6.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.30 Total: -5.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.94 -10.07 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.587 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds