Wall clock time and date at job start Tue Mar 31 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46761 * 2 1 4 4 H 1.09001 * 109.47496 * 305.20510 * 3 2 1 5 5 C 1.50709 * 109.46834 * 185.20894 * 3 2 1 6 6 H 1.08001 * 119.99772 * 244.85233 * 5 3 2 7 7 C 1.37870 * 120.00005 * 64.84948 * 5 3 2 8 8 N 1.31514 * 120.00273 * 6.51368 * 7 5 3 9 9 Si 1.86804 * 119.99796 * 186.51003 * 7 5 3 10 10 H 1.48496 * 109.46991 * 85.00059 * 9 7 5 11 11 H 1.48509 * 109.46886 * 204.99659 * 9 7 5 12 12 H 1.48496 * 109.47483 * 324.99602 * 9 7 5 13 13 N 1.46500 * 109.47417 * 65.20699 * 3 2 1 14 14 C 1.34766 * 120.00165 * 274.99772 * 13 3 2 15 15 O 1.21552 * 119.99964 * 0.02562 * 14 13 3 16 16 C 1.47851 * 120.00219 * 179.97438 * 14 13 3 17 17 C 1.39322 * 119.88136 * 5.51264 * 16 14 13 18 18 C 1.37937 * 119.60903 * 179.97438 * 17 16 14 19 19 C 1.38091 * 119.93470 * 0.14917 * 18 17 16 20 20 C 1.39029 * 120.85196 * 0.02562 * 19 18 17 21 21 C 1.37421 * 119.76415 * 359.41677 * 20 19 18 22 22 C 1.50618 * 122.63166 * 180.99042 * 21 20 19 23 23 C 1.52736 * 110.58258 * 342.20176 * 22 21 20 24 24 C 1.53324 * 108.36322 * 51.14559 * 23 22 21 25 25 C 1.50656 * 117.69690 * 179.31805 * 20 19 18 26 26 H 1.09003 * 109.46723 * 60.00357 * 1 2 3 27 27 H 1.09002 * 109.46965 * 299.99938 * 1 2 3 28 28 H 1.09004 * 109.47053 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46958 * 120.00140 * 2 1 3 30 30 H 1.09002 * 109.46965 * 240.00062 * 2 1 3 31 31 H 0.96999 * 120.00555 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99951 * 94.99444 * 13 3 2 33 33 H 1.08006 * 120.19615 * 359.95219 * 17 16 14 34 34 H 1.08000 * 120.03236 * 180.11838 * 18 17 16 35 35 H 1.07990 * 119.57520 * 179.97438 * 19 18 17 36 36 H 1.08998 * 109.25175 * 102.48998 * 22 21 20 37 37 H 1.08998 * 109.25352 * 221.91835 * 22 21 20 38 38 H 1.09004 * 109.68141 * 170.85666 * 23 22 21 39 39 H 1.08994 * 109.68984 * 291.42278 * 23 22 21 40 40 H 1.08994 * 109.68240 * 49.98787 * 24 23 22 41 41 H 1.09008 * 109.67705 * 170.53070 * 24 23 22 42 42 H 1.08997 * 109.24639 * 282.67243 * 25 20 19 43 43 H 1.09003 * 109.24814 * 42.08953 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6025 1.9826 -0.8397 5 6 3.5415 1.4445 -0.1290 6 1 4.1525 1.8169 0.6800 7 6 4.1352 0.9709 -1.2797 8 7 3.3933 0.6374 -2.3131 9 14 5.9934 0.8030 -1.3709 10 1 6.4014 -0.5027 -0.7930 11 1 6.4278 0.8738 -2.7893 12 1 6.6283 1.9042 -0.6032 13 7 1.6566 2.0960 1.2539 14 6 0.4398 2.6627 1.3739 15 8 -0.3398 2.6313 0.4419 16 6 0.0528 3.3218 2.6395 17 6 0.9859 3.4572 3.6652 18 6 0.6189 4.0735 4.8434 19 6 -0.6681 4.5486 5.0007 20 6 -1.6069 4.4146 3.9840 21 6 -1.2502 3.8128 2.8012 22 6 -2.2082 3.6534 1.6499 23 6 -3.6501 3.8252 2.1233 24 6 -3.7452 5.1335 2.9172 25 6 -2.9942 4.9445 4.2376 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8109 0.3045 -3.1228 32 1 2.2787 2.1208 1.9978 33 1 1.9906 3.0816 3.5387 34 1 1.3372 4.1838 5.6423 35 1 -0.9493 5.0298 5.9257 36 1 -1.9869 4.4045 0.8916 37 1 -2.0879 2.6603 1.2171 38 1 -4.3166 3.8692 1.2619 39 1 -3.9293 2.9872 2.7618 40 1 -3.2960 5.9443 2.3438 41 1 -4.7909 5.3635 3.1218 42 1 -3.5353 4.2447 4.8744 43 1 -2.9242 5.9082 4.7421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294858708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:34 Heat of formation + Delta-G solvation = -35.279831 kcal Electronic energy + Delta-G solvation = -23116.272310 eV Core-core repulsion = 19932.042553 eV Total energy + Delta-G solvation = -3184.229757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35277 -38.41967 -35.99365 -35.08665 -32.48823 -32.20896 -31.01858 -30.11587 -28.77130 -26.86101 -23.97965 -23.37588 -22.68327 -22.42445 -20.26511 -19.67653 -18.93743 -17.43162 -16.01705 -15.89900 -15.43763 -15.13082 -14.98722 -14.59478 -14.32304 -13.87233 -13.62727 -13.46973 -13.10847 -12.69709 -12.51314 -12.38812 -12.04211 -11.84811 -11.63850 -11.44907 -11.37245 -11.31258 -11.00799 -10.82773 -10.74288 -10.62839 -10.32876 -10.23136 -10.16296 -9.65607 -9.08147 -8.74681 -8.63898 -8.50097 -8.42807 -7.79245 -6.13858 -4.20509 1.10829 1.47311 3.24973 3.31708 3.33006 3.37732 4.08896 4.18145 4.38722 4.63714 4.75179 4.95228 5.00471 5.13371 5.18498 5.19350 5.28590 5.39218 5.53004 5.60755 5.67398 5.84528 5.86998 5.94940 6.05858 6.10733 6.19867 6.36293 6.39725 6.43417 6.47636 6.50387 6.55045 6.61601 6.85295 7.00396 7.07348 7.18593 7.34117 7.44108 7.62032 7.72699 7.86376 8.09340 8.68129 8.79249 9.13838 9.46058 10.93936 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.004282 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.891393 B = 6537.733433 C = 7262.734844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.269 3.731 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.540 3.460 15 O -0.539 6.539 16 C -0.128 4.128 17 C -0.090 4.090 18 C -0.134 4.134 19 C -0.105 4.105 20 C -0.095 4.095 21 C -0.018 4.018 22 C -0.085 4.085 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.075 4.075 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.022 0.978 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.056 6.710 13.639 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.327 3.673 15 O -0.419 6.419 16 C -0.131 4.131 17 C -0.108 4.108 18 C -0.152 4.152 19 C -0.123 4.123 20 C -0.095 4.095 21 C -0.019 4.019 22 C -0.121 4.121 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.112 4.112 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.558 6.589 12.730 17.802 hybrid contribution 1.565 -0.133 0.410 1.624 sum -8.992 6.455 13.140 17.181 Atomic orbital electron populations 1.21850 0.98087 0.98139 1.01471 1.21854 0.92953 0.99827 1.01321 1.18808 0.94377 0.88993 0.81045 0.92591 1.21188 0.90638 1.43498 1.02185 0.92172 1.24873 0.98446 0.95058 0.95090 1.69961 1.35361 1.42964 1.03441 0.86522 0.85067 0.78602 0.77274 1.20445 1.21138 1.19922 1.46462 1.14337 1.55634 1.18519 1.18165 0.82940 0.79302 0.86922 1.90686 1.50347 1.60501 1.40385 1.20333 0.94632 1.02453 0.95681 1.21319 0.99051 0.97556 0.92913 1.20942 0.96469 1.00112 0.97688 1.21243 0.93344 0.99437 0.98306 1.19562 0.96080 1.00216 0.93635 1.19742 0.93396 0.94024 0.94698 1.20816 0.90991 1.05646 0.94697 1.21674 0.97495 0.97217 0.99775 1.21633 0.99693 0.98478 0.96037 1.20484 0.92154 1.00521 0.98071 0.92925 0.94033 0.95846 0.94849 0.89858 0.92559 0.78026 0.85511 0.85846 0.86283 0.90130 0.87481 0.91588 0.92073 0.91589 0.91855 0.90797 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.12 -2.89 5.49 -26.73 -0.15 -3.04 16 3 C 0.27 6.74 2.11 -69.08 -0.15 6.59 16 4 H 0.06 1.63 7.56 -51.93 -0.39 1.24 16 5 C -0.54 -14.13 8.67 -34.44 -0.30 -14.43 16 6 H 0.06 1.52 7.73 -52.49 -0.41 1.11 16 7 C 0.07 1.85 5.21 -17.82 -0.09 1.76 16 8 N -0.88 -24.76 11.98 55.43 0.66 -24.10 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.70 4.97 -55.88 -0.28 -14.98 16 14 C 0.54 10.93 6.26 -12.33 -0.08 10.85 16 15 O -0.54 -12.09 10.20 5.32 0.05 -12.04 16 16 C -0.13 -2.15 5.88 -104.83 -0.62 -2.77 16 17 C -0.09 -1.27 9.52 -39.29 -0.37 -1.65 16 18 C -0.13 -1.60 10.03 -39.75 -0.40 -2.00 16 19 C -0.10 -1.21 9.60 -39.34 -0.38 -1.59 16 20 C -0.09 -1.21 5.73 -104.65 -0.60 -1.81 16 21 C -0.02 -0.27 5.77 -104.23 -0.60 -0.87 16 22 C -0.09 -1.30 4.21 -28.06 -0.12 -1.42 16 23 C -0.12 -1.47 5.97 -26.70 -0.16 -1.63 16 24 C -0.12 -1.22 6.00 -26.53 -0.16 -1.38 16 25 C -0.08 -0.75 5.67 -27.87 -0.16 -0.91 16 26 H 0.05 1.23 7.86 -51.93 -0.41 0.82 16 27 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 2.20 6.62 -51.93 -0.34 1.85 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.39 7.14 6.57 -40.82 -0.27 6.87 16 33 H 0.13 1.65 6.42 -52.48 -0.34 1.31 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.12 1.04 8.05 -52.49 -0.42 0.62 16 36 H 0.08 1.32 8.02 -51.93 -0.42 0.90 16 37 H 0.11 1.90 5.95 -51.93 -0.31 1.59 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -29.19 334.46 -10.08 -39.27 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.53 Total: 8.27 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -4.01 Total: -17.02 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.39 Total: -39.08 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.05 Total: -12.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.19 -10.08 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294858708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.988 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds