Wall clock time and date at job start Tue Mar 31 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46761 * 2 1 4 4 H 1.09001 * 109.47496 * 305.20510 * 3 2 1 5 5 C 1.50709 * 109.46834 * 185.20894 * 3 2 1 6 6 H 1.08001 * 119.99772 * 244.85233 * 5 3 2 7 7 C 1.37870 * 120.00005 * 64.84948 * 5 3 2 8 8 N 1.31514 * 120.00273 * 6.51368 * 7 5 3 9 9 Si 1.86804 * 119.99796 * 186.51003 * 7 5 3 10 10 H 1.48496 * 109.46991 * 85.00059 * 9 7 5 11 11 H 1.48509 * 109.46886 * 204.99659 * 9 7 5 12 12 H 1.48496 * 109.47483 * 324.99602 * 9 7 5 13 13 N 1.46500 * 109.47417 * 65.20699 * 3 2 1 14 14 C 1.34766 * 120.00165 * 274.99772 * 13 3 2 15 15 O 1.21552 * 119.99964 * 0.02562 * 14 13 3 16 16 C 1.47851 * 120.00219 * 179.97438 * 14 13 3 17 17 C 1.39322 * 119.88136 * 5.51264 * 16 14 13 18 18 C 1.37937 * 119.60903 * 179.97438 * 17 16 14 19 19 C 1.38091 * 119.93470 * 0.14917 * 18 17 16 20 20 C 1.39029 * 120.85196 * 0.02562 * 19 18 17 21 21 C 1.37421 * 119.76415 * 359.41677 * 20 19 18 22 22 C 1.50618 * 122.63166 * 180.99042 * 21 20 19 23 23 C 1.52736 * 110.58258 * 342.20176 * 22 21 20 24 24 C 1.53324 * 108.36322 * 51.14559 * 23 22 21 25 25 C 1.50656 * 117.69690 * 179.31805 * 20 19 18 26 26 H 1.09003 * 109.46723 * 60.00357 * 1 2 3 27 27 H 1.09002 * 109.46965 * 299.99938 * 1 2 3 28 28 H 1.09004 * 109.47053 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46958 * 120.00140 * 2 1 3 30 30 H 1.09002 * 109.46965 * 240.00062 * 2 1 3 31 31 H 0.96999 * 120.00555 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99951 * 94.99444 * 13 3 2 33 33 H 1.08006 * 120.19615 * 359.95219 * 17 16 14 34 34 H 1.08000 * 120.03236 * 180.11838 * 18 17 16 35 35 H 1.07990 * 119.57520 * 179.97438 * 19 18 17 36 36 H 1.08998 * 109.25175 * 102.48998 * 22 21 20 37 37 H 1.08998 * 109.25352 * 221.91835 * 22 21 20 38 38 H 1.09004 * 109.68141 * 170.85666 * 23 22 21 39 39 H 1.08994 * 109.68984 * 291.42278 * 23 22 21 40 40 H 1.08994 * 109.68240 * 49.98787 * 24 23 22 41 41 H 1.09008 * 109.67705 * 170.53070 * 24 23 22 42 42 H 1.08997 * 109.24639 * 282.67243 * 25 20 19 43 43 H 1.09003 * 109.24814 * 42.08953 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6025 1.9826 -0.8397 5 6 3.5415 1.4445 -0.1290 6 1 4.1525 1.8169 0.6800 7 6 4.1352 0.9709 -1.2797 8 7 3.3933 0.6374 -2.3131 9 14 5.9934 0.8030 -1.3709 10 1 6.4014 -0.5027 -0.7930 11 1 6.4278 0.8738 -2.7893 12 1 6.6283 1.9042 -0.6032 13 7 1.6566 2.0960 1.2539 14 6 0.4398 2.6627 1.3739 15 8 -0.3398 2.6313 0.4419 16 6 0.0528 3.3218 2.6395 17 6 0.9859 3.4572 3.6652 18 6 0.6189 4.0735 4.8434 19 6 -0.6681 4.5486 5.0007 20 6 -1.6069 4.4146 3.9840 21 6 -1.2502 3.8128 2.8012 22 6 -2.2082 3.6534 1.6499 23 6 -3.6501 3.8252 2.1233 24 6 -3.7452 5.1335 2.9172 25 6 -2.9942 4.9445 4.2376 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8109 0.3045 -3.1228 32 1 2.2787 2.1208 1.9978 33 1 1.9906 3.0816 3.5387 34 1 1.3372 4.1838 5.6423 35 1 -0.9493 5.0298 5.9257 36 1 -1.9869 4.4045 0.8916 37 1 -2.0879 2.6603 1.2171 38 1 -4.3166 3.8692 1.2619 39 1 -3.9293 2.9872 2.7618 40 1 -3.2960 5.9443 2.3438 41 1 -4.7909 5.3635 3.1218 42 1 -3.5353 4.2447 4.8744 43 1 -2.9242 5.9082 4.7421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294858708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:34 Heat of formation + Delta-G solvation = -50.949395 kcal Electronic energy + Delta-G solvation = -23116.951793 eV Core-core repulsion = 19932.042553 eV Total energy + Delta-G solvation = -3184.909241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59399 -39.85889 -37.05543 -36.86221 -34.32161 -33.50915 -32.72039 -31.12077 -29.98478 -28.70908 -25.42457 -24.73830 -24.03700 -23.49502 -21.91664 -21.25003 -20.11211 -19.05438 -17.62631 -17.36325 -16.77200 -16.48713 -16.35376 -16.01427 -15.81824 -15.11691 -14.72254 -14.64838 -14.58507 -14.39259 -13.70374 -13.62758 -13.41803 -13.31620 -13.25123 -12.95997 -12.80437 -12.66682 -12.59442 -12.39936 -12.19500 -12.07384 -11.71623 -11.70209 -11.55785 -11.17287 -11.08974 -10.57154 -10.22420 -9.84883 -9.53609 -9.45722 -8.19748 -6.34474 -0.02585 0.44707 1.43452 1.44414 1.54050 2.06206 2.35110 2.63370 2.92362 3.11862 3.72683 3.77853 3.92329 4.08367 4.11371 4.22873 4.30003 4.42631 4.45183 4.51616 4.53135 4.68302 4.69915 4.75355 4.91675 4.97555 5.00729 5.04938 5.09417 5.15588 5.21553 5.25633 5.34655 5.41410 5.46862 5.47350 5.50703 5.56148 5.60252 5.72756 5.78368 5.92422 6.05529 6.07722 6.73757 6.98216 7.31972 7.56011 8.88495 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.004282 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.891393 B = 6537.733433 C = 7262.734844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 C 0.279 3.721 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.702 5.702 14 C 0.535 3.465 15 O -0.571 6.571 16 C -0.158 4.158 17 C -0.097 4.097 18 C -0.128 4.128 19 C -0.093 4.093 20 C -0.097 4.097 21 C -0.038 4.038 22 C -0.081 4.081 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.074 4.074 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.265 0.735 32 H 0.399 0.601 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 7.827 17.431 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.175 3.825 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.351 5.351 14 C 0.324 3.676 15 O -0.454 6.454 16 C -0.161 4.161 17 C -0.115 4.115 18 C -0.146 4.146 19 C -0.111 4.111 20 C -0.097 4.097 21 C -0.039 4.039 22 C -0.118 4.118 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.111 4.111 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.235 0.765 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.177 0.823 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.555 7.717 16.560 21.099 hybrid contribution 1.499 -0.421 -0.729 1.720 sum -9.056 7.296 15.831 19.643 Atomic orbital electron populations 1.21672 0.96744 0.99247 1.00354 1.21701 0.94048 0.99025 1.00409 1.18379 0.93804 0.89055 0.81223 0.97936 1.21542 0.91338 1.43403 1.02626 0.91164 1.25767 1.03278 0.94587 0.94622 1.70114 1.37428 1.43826 1.04029 0.85414 0.79118 0.79017 0.77136 1.19483 1.21270 1.18894 1.46221 1.15234 1.56057 1.17592 1.18818 0.82049 0.78634 0.88099 1.90677 1.51122 1.61515 1.42044 1.20137 0.96339 1.04860 0.94761 1.21485 0.98828 0.97971 0.93256 1.21355 0.97543 0.98408 0.97253 1.21740 0.92553 0.97704 0.99061 1.19956 0.98095 0.99061 0.92588 1.19858 0.92774 0.95360 0.95891 1.20622 0.93820 1.02714 0.94602 1.21644 0.94817 0.98872 1.00391 1.21631 1.01397 0.96650 0.95848 1.20594 0.90273 1.02080 0.98131 0.95335 0.93855 0.93419 0.93679 0.92516 0.92594 0.76544 0.84928 0.82386 0.82251 0.92646 0.91066 0.91265 0.91545 0.92501 0.89197 0.89047 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.52 71.98 0.61 -5.05 16 2 C -0.11 -5.65 5.49 30.60 0.17 -5.48 16 3 C 0.28 14.69 2.11 44.25 0.09 14.79 16 4 H 0.00 0.17 7.56 -2.39 -0.02 0.15 16 5 C -0.55 -29.75 8.67 25.60 0.22 -29.53 16 6 H 0.07 3.56 7.73 -2.91 -0.02 3.53 16 7 C 0.02 0.98 5.21 84.65 0.44 1.42 16 8 N -0.92 -53.58 11.98 21.44 0.26 -53.33 16 9 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 13 N -0.70 -30.74 4.97 -448.98 -2.23 -32.98 16 14 C 0.54 22.96 6.26 86.79 0.54 23.50 16 15 O -0.57 -27.92 10.20 -3.88 -0.04 -27.96 16 16 C -0.16 -5.41 5.88 -20.00 -0.12 -5.53 16 17 C -0.10 -2.62 9.52 22.46 0.21 -2.41 16 18 C -0.13 -2.57 10.03 22.16 0.22 -2.35 16 19 C -0.09 -1.72 9.60 22.42 0.22 -1.50 16 20 C -0.10 -2.21 5.73 -19.88 -0.11 -2.33 16 21 C -0.04 -1.17 5.77 -19.61 -0.11 -1.28 16 22 C -0.08 -2.62 4.21 29.73 0.13 -2.50 16 23 C -0.12 -2.79 5.97 30.62 0.18 -2.61 16 24 C -0.12 -2.10 6.00 30.73 0.18 -1.91 16 25 C -0.07 -1.18 5.67 29.86 0.17 -1.01 16 26 H 0.03 1.41 7.86 -2.39 -0.02 1.39 16 27 H 0.04 1.96 5.64 -2.39 -0.01 1.94 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 3.13 6.62 -2.39 -0.02 3.12 16 31 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.40 15.07 6.57 -92.71 -0.61 14.46 16 33 H 0.13 3.31 6.42 -2.91 -0.02 3.29 16 34 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.16 1.73 8.05 -2.92 -0.02 1.70 16 36 H 0.06 2.00 8.02 -2.39 -0.02 1.98 16 37 H 0.07 2.79 5.95 -2.39 -0.01 2.77 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 40 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 41 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 Total: -1.00 -68.12 334.46 3.46 -64.66 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.40 Total: 28.80 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.05 Total: -23.77 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -1.97 Total: -86.30 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.04 Total: -27.96 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -68.12 3.46 -64.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294858708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.710 kcal (2) G-P(sol) polarization free energy of solvation -68.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds