Wall clock time and date at job start Tue Mar 31 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46925 * 2 1 4 4 H 1.08989 * 109.50872 * 57.37559 * 3 2 1 5 5 C 1.53096 * 109.50536 * 297.28356 * 3 2 1 6 6 O 1.43014 * 109.25822 * 183.21687 * 5 3 2 7 7 C 1.43020 * 113.73789 * 58.67213 * 6 5 3 8 8 H 1.09007 * 109.49881 * 61.31003 * 7 6 5 9 9 C 1.53002 * 109.50873 * 181.39460 * 7 6 5 10 10 C 1.53009 * 109.46865 * 295.00410 * 9 7 6 11 11 C 1.53093 * 109.26052 * 301.33472 * 7 6 5 12 12 N 1.47013 * 109.26083 * 56.84123 * 11 7 6 13 13 C 1.46903 * 111.00208 * 177.60674 * 12 11 7 14 14 C 1.52999 * 109.47324 * 290.38426 * 13 12 11 15 15 C 1.52996 * 109.47194 * 179.97438 * 14 13 12 16 16 S 1.80994 * 109.47504 * 179.97438 * 15 14 13 17 17 C 1.76197 * 100.00294 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99893 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00089 * 180.02562 * 17 16 15 20 20 N 1.31640 * 119.99919 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00398 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47688 * 119.99270 * 21 19 17 24 24 H 1.48500 * 109.47487 * 239.99824 * 21 19 17 25 25 H 1.08998 * 109.47287 * 302.05523 * 1 2 3 26 26 H 1.09003 * 109.47218 * 182.05764 * 1 2 3 27 27 H 1.09004 * 109.47010 * 62.06231 * 1 2 3 28 28 H 1.08999 * 109.47121 * 119.99976 * 2 1 3 29 29 H 1.09005 * 109.46781 * 239.99903 * 2 1 3 30 30 H 1.08999 * 109.51164 * 303.15885 * 5 3 2 31 31 H 1.09000 * 109.50744 * 63.28828 * 5 3 2 32 32 H 1.09000 * 109.46809 * 55.00052 * 9 7 6 33 33 H 1.08993 * 109.46972 * 175.00552 * 9 7 6 34 34 H 1.08994 * 109.46948 * 59.99809 * 10 9 7 35 35 H 1.08999 * 109.46743 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.46798 * 299.99832 * 10 9 7 37 37 H 1.08994 * 109.50948 * 176.78364 * 11 7 6 38 38 H 1.09005 * 109.50388 * 296.91447 * 11 7 6 39 39 H 1.09007 * 109.46411 * 50.37955 * 13 12 11 40 40 H 1.09000 * 109.46995 * 170.37735 * 13 12 11 41 41 H 1.09001 * 109.46528 * 299.99682 * 14 13 12 42 42 H 1.08996 * 109.47177 * 59.99583 * 14 13 12 43 43 H 1.09002 * 109.46918 * 299.99830 * 15 14 13 44 44 H 1.09001 * 109.47369 * 59.99032 * 15 14 13 45 45 H 0.97006 * 119.99366 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6391 1.9703 0.8652 5 6 1.5867 2.1450 -1.2826 6 8 2.1285 3.4682 -1.3124 7 6 3.5571 3.5067 -1.2558 8 1 3.9696 2.9885 -2.1215 9 6 4.0294 4.9620 -1.2586 10 6 3.6597 5.6157 -2.5917 11 6 4.0304 2.8180 0.0269 12 7 3.5089 1.4439 0.0603 13 6 3.9876 0.7278 1.2503 14 6 5.4882 0.4613 1.1159 15 6 5.9869 -0.2839 2.3555 16 16 7.7619 -0.5999 2.1962 17 6 8.0604 -1.4420 3.7149 18 1 7.2484 -1.6127 4.4063 19 6 9.3391 -1.8849 4.0232 20 7 10.3288 -1.6764 3.1807 21 14 9.6554 -2.7783 5.6329 22 1 8.3868 -2.8851 6.3974 23 1 10.1790 -4.1387 5.3495 24 1 10.6519 -2.0209 6.4319 25 1 -0.3634 0.5454 0.8710 26 1 -0.3634 -1.0270 0.0369 27 1 -0.3633 0.4815 -0.9079 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.9419 1.5865 -2.1486 31 1 0.4981 2.1970 -1.3038 32 1 3.5478 5.5018 -0.4433 33 1 5.1108 4.9932 -1.1262 34 1 2.5783 5.5844 -2.7240 35 1 3.9958 6.6525 -2.5934 36 1 4.1413 5.0758 -3.4070 37 1 5.1199 2.7944 0.0466 38 1 3.6619 3.3682 0.8927 39 1 3.8044 1.3343 2.1373 40 1 3.4570 -0.2199 1.3420 41 1 5.6714 -0.1451 0.2288 42 1 6.0188 1.4090 1.0241 43 1 5.8037 0.3228 3.2423 44 1 5.4563 -1.2316 2.4478 45 1 11.2225 -1.9864 3.3960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593059729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:00 Heat of formation + Delta-G solvation = -70.508504 kcal Electronic energy + Delta-G solvation = -21066.182199 eV Core-core repulsion = 18015.868763 eV Total energy + Delta-G solvation = -3050.313436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14904 -36.79162 -34.97728 -33.42104 -32.44464 -32.17506 -28.99708 -27.70144 -25.65490 -25.07591 -24.39183 -22.42164 -21.23199 -20.81600 -20.07554 -17.47811 -16.88125 -16.48729 -15.57401 -15.05119 -14.87093 -14.80278 -14.63338 -14.41727 -14.00980 -13.66245 -13.58072 -13.48074 -13.03605 -12.87448 -12.49916 -12.06573 -11.89455 -11.82368 -11.54797 -11.46321 -11.19162 -11.12883 -11.11322 -11.04516 -10.89939 -10.79414 -10.62010 -10.37704 -10.19464 -9.68766 -9.43470 -9.06229 -8.40027 -8.28744 -6.51955 -6.22544 -3.92488 3.20887 3.21792 3.29822 3.48975 3.60503 3.77351 4.22899 4.53714 4.61687 4.70616 4.86396 4.96011 5.00102 5.10193 5.13559 5.17072 5.20730 5.25006 5.32639 5.38002 5.38793 5.48227 5.57782 5.60786 5.63790 5.72463 5.72924 5.77143 5.79609 5.81418 5.91916 5.95825 5.98839 6.09036 6.14034 6.16443 6.35181 6.58736 6.74765 6.95468 7.01422 7.09751 7.61174 8.37255 9.23914 10.85677 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.003172 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.898869 B = 8825.864582 C = 9936.659070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.049 3.951 4 H 0.046 0.954 5 C 0.070 3.930 6 O -0.383 6.383 7 C 0.093 3.907 8 H 0.067 0.933 9 C -0.117 4.117 10 C -0.148 4.148 11 C 0.022 3.978 12 N -0.532 5.532 13 C 0.054 3.946 14 C -0.091 4.091 15 C -0.112 4.112 16 S -0.132 6.132 17 C -0.515 4.515 18 H 0.072 0.928 19 C 0.070 3.930 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.032 0.968 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.178 9.532 -9.362 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.060 4.060 4 H 0.064 0.936 5 C -0.007 4.007 6 O -0.302 6.302 7 C 0.035 3.965 8 H 0.085 0.915 9 C -0.155 4.155 10 C -0.205 4.205 11 C -0.106 4.106 12 N -0.257 5.257 13 C -0.074 4.074 14 C -0.130 4.130 15 C -0.262 4.262 16 S 0.096 5.904 17 C -0.664 4.664 18 H 0.090 0.910 19 C -0.138 4.138 20 N -0.505 5.505 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.193 9.692 -10.654 22.428 hybrid contribution -0.678 -0.781 2.884 3.064 sum -17.871 8.910 -7.770 21.428 Atomic orbital electron populations 1.21813 0.95502 1.01962 1.01773 1.21627 0.95501 0.95279 1.03462 1.22322 0.88415 0.96963 0.98313 0.93557 1.22717 0.98392 0.83284 0.96265 1.87954 1.20413 1.27058 1.94731 1.22235 0.81122 0.96195 0.96904 0.91471 1.21536 1.01202 0.93662 0.99070 1.21694 1.02150 0.99987 0.96661 1.22863 1.01627 0.88591 0.97560 1.62215 1.07553 1.14797 1.41104 1.22317 0.96982 0.98392 0.89740 1.21248 0.92894 1.00723 0.98158 1.23230 1.02394 1.01357 0.99189 1.84628 1.00491 1.75283 1.29986 1.22732 0.97304 1.42130 1.04192 0.90965 1.25018 0.95138 0.95835 0.97853 1.70043 1.00736 1.44415 1.35329 0.86116 0.78377 0.79109 0.81934 1.19630 1.20559 1.20584 0.92763 0.92330 0.92549 0.91026 0.90786 0.92382 0.88636 0.91283 0.90254 0.92103 0.92803 0.92814 0.88953 0.94150 0.94937 0.90138 0.90788 0.91811 0.92418 0.92182 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.57 37.16 0.36 -0.81 16 2 C -0.12 -1.16 5.25 -26.73 -0.14 -1.30 16 3 C 0.05 0.53 2.08 -67.60 -0.14 0.39 16 4 H 0.05 0.54 8.14 -51.94 -0.42 0.12 16 5 C 0.07 0.71 5.91 37.21 0.22 0.93 16 6 O -0.38 -4.47 10.01 -35.23 -0.35 -4.82 16 7 C 0.09 1.02 2.80 -26.68 -0.07 0.95 16 8 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 9 C -0.12 -1.09 5.65 -26.73 -0.15 -1.24 16 10 C -0.15 -1.25 9.81 37.16 0.36 -0.89 16 11 C 0.02 0.26 4.74 -3.71 -0.02 0.24 16 12 N -0.53 -6.71 4.51 -226.34 -1.02 -7.73 16 13 C 0.05 0.75 4.79 -3.82 -0.02 0.73 16 14 C -0.09 -1.52 5.22 -26.73 -0.14 -1.66 16 15 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 16 S -0.13 -3.48 21.44 -107.50 -2.30 -5.79 16 17 C -0.52 -14.89 9.50 30.94 0.29 -14.59 16 18 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 19 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 20 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 21 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.38 6.68 -51.93 -0.35 0.03 16 28 H 0.07 0.74 5.97 -51.93 -0.31 0.43 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.80 6.72 -51.93 -0.35 0.45 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 1.14 6.52 -51.93 -0.34 0.81 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 40 H 0.08 1.07 5.58 -51.93 -0.29 0.78 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.07 6.63 -51.93 -0.34 0.72 16 43 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 44 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -30.97 360.64 -10.13 -41.10 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -8.27 Total: -2.03 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 0.67 Total: -17.41 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: -0.29 Total: -33.10 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.35 Total: -4.82 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.97 -10.13 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593059729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.407 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds