Wall clock time and date at job start Tue Mar 31 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46925 * 2 1 4 4 H 1.08989 * 109.50872 * 57.37559 * 3 2 1 5 5 C 1.53096 * 109.50536 * 297.28356 * 3 2 1 6 6 O 1.43014 * 109.25822 * 183.21687 * 5 3 2 7 7 C 1.43020 * 113.73789 * 58.67213 * 6 5 3 8 8 H 1.09007 * 109.49881 * 61.31003 * 7 6 5 9 9 C 1.53002 * 109.50873 * 181.39460 * 7 6 5 10 10 C 1.53009 * 109.46865 * 295.00410 * 9 7 6 11 11 C 1.53093 * 109.26052 * 301.33472 * 7 6 5 12 12 N 1.47013 * 109.26083 * 56.84123 * 11 7 6 13 13 C 1.46903 * 111.00208 * 177.60674 * 12 11 7 14 14 C 1.52999 * 109.47324 * 290.38426 * 13 12 11 15 15 C 1.52996 * 109.47194 * 179.97438 * 14 13 12 16 16 S 1.80994 * 109.47504 * 179.97438 * 15 14 13 17 17 C 1.76197 * 100.00294 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99893 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00089 * 180.02562 * 17 16 15 20 20 N 1.31640 * 119.99919 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00398 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47688 * 119.99270 * 21 19 17 24 24 H 1.48500 * 109.47487 * 239.99824 * 21 19 17 25 25 H 1.08998 * 109.47287 * 302.05523 * 1 2 3 26 26 H 1.09003 * 109.47218 * 182.05764 * 1 2 3 27 27 H 1.09004 * 109.47010 * 62.06231 * 1 2 3 28 28 H 1.08999 * 109.47121 * 119.99976 * 2 1 3 29 29 H 1.09005 * 109.46781 * 239.99903 * 2 1 3 30 30 H 1.08999 * 109.51164 * 303.15885 * 5 3 2 31 31 H 1.09000 * 109.50744 * 63.28828 * 5 3 2 32 32 H 1.09000 * 109.46809 * 55.00052 * 9 7 6 33 33 H 1.08993 * 109.46972 * 175.00552 * 9 7 6 34 34 H 1.08994 * 109.46948 * 59.99809 * 10 9 7 35 35 H 1.08999 * 109.46743 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.46798 * 299.99832 * 10 9 7 37 37 H 1.08994 * 109.50948 * 176.78364 * 11 7 6 38 38 H 1.09005 * 109.50388 * 296.91447 * 11 7 6 39 39 H 1.09007 * 109.46411 * 50.37955 * 13 12 11 40 40 H 1.09000 * 109.46995 * 170.37735 * 13 12 11 41 41 H 1.09001 * 109.46528 * 299.99682 * 14 13 12 42 42 H 1.08996 * 109.47177 * 59.99583 * 14 13 12 43 43 H 1.09002 * 109.46918 * 299.99830 * 15 14 13 44 44 H 1.09001 * 109.47369 * 59.99032 * 15 14 13 45 45 H 0.97006 * 119.99366 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6391 1.9703 0.8652 5 6 1.5867 2.1450 -1.2826 6 8 2.1285 3.4682 -1.3124 7 6 3.5571 3.5067 -1.2558 8 1 3.9696 2.9885 -2.1215 9 6 4.0294 4.9620 -1.2586 10 6 3.6597 5.6157 -2.5917 11 6 4.0304 2.8180 0.0269 12 7 3.5089 1.4439 0.0603 13 6 3.9876 0.7278 1.2503 14 6 5.4882 0.4613 1.1159 15 6 5.9869 -0.2839 2.3555 16 16 7.7619 -0.5999 2.1962 17 6 8.0604 -1.4420 3.7149 18 1 7.2484 -1.6127 4.4063 19 6 9.3391 -1.8849 4.0232 20 7 10.3288 -1.6764 3.1807 21 14 9.6554 -2.7783 5.6329 22 1 8.3868 -2.8851 6.3974 23 1 10.1790 -4.1387 5.3495 24 1 10.6519 -2.0209 6.4319 25 1 -0.3634 0.5454 0.8710 26 1 -0.3634 -1.0270 0.0369 27 1 -0.3633 0.4815 -0.9079 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.9419 1.5865 -2.1486 31 1 0.4981 2.1970 -1.3038 32 1 3.5478 5.5018 -0.4433 33 1 5.1108 4.9932 -1.1262 34 1 2.5783 5.5844 -2.7240 35 1 3.9958 6.6525 -2.5934 36 1 4.1413 5.0758 -3.4070 37 1 5.1199 2.7944 0.0466 38 1 3.6619 3.3682 0.8927 39 1 3.8044 1.3343 2.1373 40 1 3.4570 -0.2199 1.3420 41 1 5.6714 -0.1451 0.2288 42 1 6.0188 1.4090 1.0241 43 1 5.8037 0.3228 3.2423 44 1 5.4563 -1.2316 2.4478 45 1 11.2225 -1.9864 3.3960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593059729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:59 Heat of formation + Delta-G solvation = -88.852853 kcal Electronic energy + Delta-G solvation = -21066.977670 eV Core-core repulsion = 18015.868763 eV Total energy + Delta-G solvation = -3051.108907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06200 -37.76677 -35.89256 -34.62489 -34.34709 -33.29579 -29.78751 -28.80717 -27.77101 -25.89749 -25.59200 -23.28244 -22.28361 -21.87602 -20.99150 -19.56906 -17.75885 -17.44053 -16.90671 -16.67720 -16.26258 -15.94834 -15.71206 -15.54248 -15.14189 -14.87921 -14.60006 -14.40140 -14.22310 -13.75534 -13.50674 -13.48222 -13.25975 -12.97951 -12.88096 -12.71260 -12.52195 -12.46889 -12.31144 -12.12917 -11.88779 -11.86831 -11.67531 -11.57517 -11.31171 -11.20669 -11.15723 -10.48654 -10.31656 -9.41446 -8.67518 -8.38332 -6.14583 1.30791 1.37622 1.48635 1.72677 2.26996 2.67903 2.80549 2.95909 3.31267 3.67292 3.77438 3.84061 3.97901 4.07051 4.10543 4.20510 4.27707 4.30075 4.36237 4.41663 4.44266 4.52464 4.58731 4.60771 4.67467 4.73088 4.74922 4.80666 4.86789 4.96248 5.02797 5.11354 5.12086 5.19510 5.22998 5.25745 5.30466 5.38999 5.39472 5.44365 5.94260 6.00739 6.17448 6.22955 7.04001 8.71316 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.003172 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.898869 B = 8825.864582 C = 9936.659070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.050 3.950 4 H 0.041 0.959 5 C 0.070 3.930 6 O -0.393 6.393 7 C 0.096 3.904 8 H 0.063 0.937 9 C -0.116 4.116 10 C -0.144 4.144 11 C 0.022 3.978 12 N -0.539 5.539 13 C 0.066 3.934 14 C -0.078 4.078 15 C -0.087 4.087 16 S -0.195 6.195 17 C -0.538 4.538 18 H 0.072 0.928 19 C 0.015 3.985 20 N -0.907 5.907 21 Si 0.995 3.005 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.628 9.509 -8.969 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.058 4.058 4 H 0.059 0.941 5 C -0.007 4.007 6 O -0.312 6.312 7 C 0.038 3.962 8 H 0.081 0.919 9 C -0.154 4.154 10 C -0.201 4.201 11 C -0.106 4.106 12 N -0.264 5.264 13 C -0.064 4.064 14 C -0.117 4.117 15 C -0.237 4.237 16 S 0.033 5.967 17 C -0.686 4.686 18 H 0.090 0.910 19 C -0.190 4.190 20 N -0.544 5.544 21 Si 0.817 3.183 22 H -0.187 1.187 23 H -0.196 1.196 24 H -0.197 1.197 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.657 9.676 -10.273 23.394 hybrid contribution -0.284 -0.739 2.703 2.816 sum -18.941 8.938 -7.571 22.271 Atomic orbital electron populations 1.21787 0.93804 1.02620 1.02424 1.21601 0.96959 0.94142 1.02848 1.22388 0.86999 0.97889 0.98543 0.94148 1.22847 0.99543 0.82606 0.95703 1.87948 1.20604 1.27954 1.94679 1.22240 0.80979 0.97010 0.95934 0.91907 1.21555 1.01590 0.92647 0.99572 1.21663 1.01685 1.00664 0.96114 1.22876 1.01229 0.88425 0.98110 1.62192 1.08951 1.15019 1.40215 1.22116 0.94733 0.99127 0.90386 1.21110 0.94920 0.99800 0.95910 1.23144 0.97499 1.01988 1.01046 1.84638 1.06440 1.75472 1.30137 1.23067 0.97878 1.42775 1.04849 0.90998 1.26074 0.94683 0.96433 1.01817 1.70169 1.01326 1.45369 1.37494 0.84961 0.78577 0.77846 0.76951 1.18685 1.19612 1.19654 0.92632 0.91670 0.91407 0.91858 0.91121 0.92327 0.86568 0.91455 0.89558 0.92802 0.91602 0.92629 0.89638 0.94593 0.94929 0.89312 0.91499 0.92087 0.92240 0.91824 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.57 71.98 0.69 -1.25 16 2 C -0.12 -2.07 5.25 30.60 0.16 -1.91 16 3 C 0.05 1.02 2.08 44.93 0.09 1.11 16 4 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 5 C 0.07 1.29 5.91 72.01 0.43 1.71 16 6 O -0.39 -8.65 10.01 -148.98 -1.49 -10.14 16 7 C 0.10 2.03 2.80 30.63 0.09 2.12 16 8 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 9 C -0.12 -2.05 5.65 30.60 0.17 -1.87 16 10 C -0.14 -2.26 9.81 71.99 0.71 -1.55 16 11 C 0.02 0.51 4.74 86.31 0.41 0.92 16 12 N -0.54 -13.11 4.51 -870.01 -3.93 -17.03 16 13 C 0.07 1.74 4.79 86.30 0.41 2.16 16 14 C -0.08 -2.58 5.22 30.59 0.16 -2.42 16 15 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 16 S -0.20 -10.52 21.44 -56.49 -1.21 -11.74 16 17 C -0.54 -31.35 9.50 67.95 0.65 -30.71 16 18 H 0.07 4.05 7.80 -2.91 -0.02 4.02 16 19 C 0.01 0.85 5.49 84.85 0.47 1.31 16 20 N -0.91 -55.05 13.22 21.65 0.29 -54.77 16 21 Si 0.99 44.14 29.55 68.60 2.03 46.17 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.73 6.68 -2.38 -0.02 0.72 16 28 H 0.06 1.22 5.97 -2.39 -0.01 1.20 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.12 1.65 6.72 -2.39 -0.02 1.64 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 0.92 7.82 -2.39 -0.02 0.90 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.09 2.11 6.52 -2.39 -0.02 2.09 16 38 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.03 0.88 8.08 -2.38 -0.02 0.86 16 40 H 0.09 2.24 5.58 -2.39 -0.01 2.22 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.04 6.63 -2.39 -0.02 2.03 16 43 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 45 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -66.24 360.64 1.45 -64.79 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.93 Total: 16.24 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.84 Total: -33.53 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -3.64 Total: -71.80 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.49 Total: -10.14 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -10.52 SS G_CDS: -1.21 Total: -11.74 kcal Total: -66.24 1.45 -64.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593059729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.059 kcal (2) G-P(sol) polarization free energy of solvation -66.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds