Wall clock time and date at job start Tue Mar 31 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50699 * 119.99891 * 2 1 4 4 C 1.32992 * 119.99869 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00184 * 172.84005 * 4 2 1 6 6 C 1.47103 * 120.00131 * 352.83297 * 4 2 1 7 7 O 1.21617 * 119.99936 * 352.93176 * 6 4 2 8 8 N 1.34769 * 120.00296 * 172.93779 * 6 4 2 9 9 C 1.46496 * 120.00469 * 179.97438 * 8 6 4 10 10 H 1.09008 * 109.47047 * 324.99987 * 9 8 6 11 11 C 1.52995 * 109.47330 * 204.99742 * 9 8 6 12 12 C 1.50699 * 109.47099 * 64.99997 * 11 9 8 13 13 H 1.08000 * 120.00336 * 359.97438 * 12 11 9 14 14 C 1.37879 * 119.99842 * 179.72246 * 12 11 9 15 15 N 1.31516 * 119.99798 * 180.27715 * 14 12 11 16 16 Si 1.86798 * 120.00079 * 0.27583 * 14 12 11 17 17 H 1.48497 * 109.47103 * 90.00069 * 16 14 12 18 18 H 1.48503 * 109.46875 * 209.99616 * 16 14 12 19 19 H 1.48493 * 109.47235 * 329.99687 * 16 14 12 20 20 C 1.50707 * 109.47192 * 84.99567 * 9 8 6 21 21 C 1.38232 * 119.99567 * 39.73126 * 20 9 8 22 22 C 1.38240 * 120.00015 * 179.78815 * 21 20 9 23 23 C 1.38239 * 119.99381 * 0.44108 * 22 21 20 24 24 C 1.38231 * 120.00309 * 359.81316 * 23 22 21 25 25 C 1.38229 * 120.00243 * 220.00655 * 20 9 8 26 26 H 1.09000 * 109.46857 * 264.51127 * 1 2 3 27 27 H 1.09004 * 109.47020 * 24.50561 * 1 2 3 28 28 H 1.08999 * 109.47122 * 144.50651 * 1 2 3 29 29 H 1.09000 * 109.47265 * 267.61966 * 3 2 1 30 30 H 1.08996 * 109.46961 * 27.62254 * 3 2 1 31 31 H 1.09002 * 109.46960 * 147.62266 * 3 2 1 32 32 H 1.08992 * 109.47354 * 204.84360 * 5 4 2 33 33 H 1.09004 * 109.46949 * 324.83761 * 5 4 2 34 34 H 1.09001 * 109.47611 * 84.83472 * 5 4 2 35 35 H 0.97002 * 120.00083 * 359.97438 * 8 6 4 36 36 H 1.08999 * 109.47683 * 304.99797 * 11 9 8 37 37 H 1.09004 * 109.47166 * 184.99811 * 11 9 8 38 38 H 0.96999 * 119.99909 * 180.02562 * 15 14 12 39 39 H 1.08005 * 120.00497 * 359.97438 * 21 20 9 40 40 H 1.07995 * 120.00180 * 180.26978 * 22 21 20 41 41 H 1.08000 * 119.99735 * 179.83115 * 23 22 21 42 42 H 1.07997 * 120.00232 * 180.02562 * 24 23 22 43 43 H 1.08008 * 119.99956 * 359.97302 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 3.6701 -1.1569 -0.1632 6 6 1.4450 -2.4208 0.1579 7 8 0.2569 -2.4127 0.4174 8 7 2.0957 -3.5924 0.0155 9 6 1.3720 -4.8562 0.1738 10 1 0.6089 -4.7440 0.9441 11 6 2.3520 -5.9574 0.5834 12 6 2.9152 -5.6471 1.9463 13 1 2.6055 -4.7537 2.4680 14 6 3.8220 -6.5066 2.5294 15 7 4.3094 -6.2386 3.7212 16 14 4.3583 -8.0516 1.6268 17 1 5.5529 -7.7509 0.7975 18 1 4.6941 -9.1097 2.6132 19 1 3.2544 -8.5224 0.7523 20 6 0.7169 -5.2269 -1.1319 21 6 1.3856 -5.0200 -2.3238 22 6 0.7866 -5.3640 -3.5212 23 6 -0.4849 -5.9066 -3.5271 24 6 -1.1557 -6.1086 -2.3354 25 6 -0.5549 -5.7685 -1.1378 26 1 -0.3633 -0.0983 1.0230 27 1 -0.3633 0.9351 -0.4263 28 1 -0.3633 -0.8367 -0.5967 29 1 2.4791 1.5985 -1.0268 30 1 1.6536 2.0750 0.4765 31 1 3.1938 1.1858 0.5503 32 1 3.9878 -2.1155 -0.5731 33 1 3.9646 -0.3561 -0.8416 34 1 4.1416 -1.0024 0.8074 35 1 3.0433 -3.5989 -0.1917 36 1 3.1639 -6.0095 -0.1420 37 1 1.8309 -6.9143 0.6148 38 1 4.9476 -6.8430 4.1313 39 1 2.3774 -4.5923 -2.3195 40 1 1.3107 -5.2064 -4.4522 41 1 -0.9541 -6.1728 -4.4627 42 1 -2.1489 -6.5328 -2.3400 43 1 -1.0790 -5.9265 -0.2067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749046607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:42 Heat of formation + Delta-G solvation = -11.301278 kcal Electronic energy + Delta-G solvation = -22901.182064 eV Core-core repulsion = 19717.992094 eV Total energy + Delta-G solvation = -3183.189969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.84707 -38.68275 -36.09471 -35.02114 -32.72787 -31.63408 -30.57693 -29.79005 -29.14860 -27.81804 -25.23389 -24.52258 -22.34127 -21.75725 -21.23965 -19.72261 -18.07756 -17.08309 -16.37260 -15.95992 -15.55456 -15.02865 -14.65740 -14.43528 -14.29150 -13.81374 -13.58560 -13.40622 -13.07256 -12.85860 -12.66530 -12.55814 -12.39002 -12.29563 -12.14526 -11.96384 -11.87736 -11.56474 -11.25881 -11.15628 -11.04364 -10.74721 -10.47813 -10.21618 -9.86287 -9.32892 -9.05119 -8.67639 -8.62862 -8.58954 -8.32271 -8.24428 -6.10632 -4.10198 1.64490 1.70228 1.72095 3.24736 3.34026 3.37373 3.72650 3.82715 4.18018 4.38338 4.97654 4.99198 5.18370 5.19725 5.22498 5.26788 5.31579 5.32019 5.46131 5.49896 5.68901 5.78615 5.82876 5.83075 5.84968 5.90359 6.05156 6.06494 6.10557 6.25478 6.32203 6.35848 6.44368 6.70195 6.75334 6.77376 6.83997 6.89153 6.94402 7.07986 7.31974 7.39076 7.65839 8.19699 8.45031 8.84828 8.95758 9.50206 11.02171 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.006707 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.772743 B = 4173.455497 C = 6109.026540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.057 4.057 3 C -0.122 4.122 4 C -0.190 4.190 5 C -0.112 4.112 6 C 0.550 3.450 7 O -0.547 6.547 8 N -0.698 5.698 9 C 0.194 3.806 10 H 0.092 0.908 11 C -0.014 4.014 12 C -0.520 4.520 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.875 3.125 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.075 4.075 21 C -0.109 4.109 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.107 4.107 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.400 0.600 36 H 0.018 0.982 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 8.746 -12.951 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 C -0.178 4.178 4 C -0.193 4.193 5 C -0.169 4.169 6 C 0.339 3.661 7 O -0.428 6.428 8 N -0.347 5.347 9 C 0.090 3.910 10 H 0.110 0.890 11 C -0.051 4.051 12 C -0.557 4.557 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.076 4.076 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.126 4.126 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.236 0.764 36 H 0.036 0.964 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.111 8.649 -12.607 16.121 hybrid contribution 0.951 -0.966 -0.405 1.415 sum -4.160 7.683 -13.012 15.673 Atomic orbital electron populations 1.21042 0.91090 1.01727 1.03373 1.22248 0.96512 0.93831 0.93286 1.20941 1.00190 0.94435 1.02235 1.21298 0.96324 0.93036 1.08657 1.20749 0.91489 1.02382 1.02257 1.18258 0.86711 0.84082 0.77017 1.90708 1.15350 1.87610 1.49135 1.45866 1.13075 1.05057 1.70711 1.19943 0.95211 0.83975 0.91914 0.89017 1.19873 0.93955 0.93621 0.97680 1.21022 1.24838 1.09707 1.00172 0.90594 1.24985 0.95818 0.97638 0.94666 1.69907 1.30881 1.37687 1.15150 0.86860 0.79445 0.83643 0.79870 1.20275 1.21312 1.18933 1.20592 0.94212 0.96717 0.96092 1.20928 0.99783 1.00028 0.91996 1.21050 0.95609 1.00018 0.97648 1.21009 0.95426 1.01074 0.97700 1.21056 0.99687 1.00677 0.92637 1.21042 0.94659 0.98768 0.98114 0.90690 0.93366 0.89496 0.90967 0.91396 0.91103 0.91664 0.91638 0.90938 0.76418 0.96397 0.94857 0.92659 0.86561 0.86695 0.86790 0.86530 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 8.45 36.01 0.30 -1.32 16 2 C -0.06 -0.77 6.10 -101.17 -0.62 -1.39 16 3 C -0.12 -1.20 9.00 36.01 0.32 -0.87 16 4 C -0.19 -2.88 5.99 -102.85 -0.62 -3.50 16 5 C -0.11 -1.39 8.72 36.00 0.31 -1.08 16 6 C 0.55 10.26 7.53 -12.67 -0.10 10.16 16 7 O -0.55 -11.52 12.98 5.26 0.07 -11.45 16 8 N -0.70 -12.95 3.98 -56.12 -0.22 -13.18 16 9 C 0.19 3.92 2.12 -69.08 -0.15 3.77 16 10 H 0.09 2.06 7.44 -51.92 -0.39 1.67 16 11 C -0.01 -0.31 3.56 -27.89 -0.10 -0.41 16 12 C -0.52 -14.06 9.39 -34.44 -0.32 -14.38 16 13 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 16 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.26 -6.15 6.54 56.52 0.37 -5.79 16 20 C -0.07 -1.35 4.91 -104.62 -0.51 -1.87 16 21 C -0.11 -1.77 9.33 -39.58 -0.37 -2.14 16 22 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 23 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.12 -1.77 10.05 -39.59 -0.40 -2.17 16 25 C -0.11 -1.81 9.67 -39.59 -0.38 -2.19 16 26 H 0.07 1.12 8.03 -51.93 -0.42 0.71 16 27 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.09 1.42 6.16 -51.93 -0.32 1.10 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 31 H 0.07 0.67 7.14 -51.93 -0.37 0.30 16 32 H 0.06 0.80 6.26 -51.93 -0.33 0.47 16 33 H 0.06 0.66 7.26 -51.93 -0.38 0.28 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 6.87 6.52 -40.82 -0.27 6.60 16 36 H 0.02 0.39 7.58 -51.93 -0.39 0.00 16 37 H 0.03 0.78 7.19 -51.93 -0.37 0.40 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.12 1.76 7.71 -52.48 -0.40 1.35 16 40 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.12 1.96 8.04 -52.48 -0.42 1.54 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -31.55 351.79 -8.86 -40.41 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.60 Total: 8.62 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -3.51 Total: -19.89 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.55 Total: -39.29 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.55 -8.86 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749046607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.111 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds