Wall clock time and date at job start Tue Mar 31 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21614 * 119.99522 * 0.02562 * 14 13 3 16 16 C 1.47101 * 120.00700 * 180.02562 * 14 13 3 17 17 C 1.32989 * 120.00288 * 180.02562 * 16 14 13 18 18 C 1.50698 * 120.00141 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47595 * 124.99509 * 18 17 16 20 20 C 1.50700 * 109.47065 * 179.97438 * 19 18 17 21 21 C 1.38229 * 119.99778 * 269.72346 * 20 19 18 22 22 C 1.38241 * 119.99935 * 179.76902 * 21 20 19 23 23 C 1.38239 * 119.99513 * 0.50658 * 22 21 20 24 24 C 1.38232 * 120.00064 * 359.75027 * 23 22 21 25 25 C 1.38232 * 119.99714 * 90.00225 * 20 19 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 33 33 H 1.08001 * 119.99675 * 359.97438 * 16 14 13 34 34 H 1.08001 * 120.00036 * 359.97438 * 17 16 14 35 35 H 1.08998 * 109.46996 * 244.99477 * 18 17 16 36 36 H 1.09004 * 109.46877 * 4.98956 * 18 17 16 37 37 H 1.08998 * 109.46922 * 300.00013 * 19 18 17 38 38 H 1.08995 * 109.46724 * 59.99658 * 19 18 17 39 39 H 1.07997 * 120.00630 * 0.02562 * 21 20 19 40 40 H 1.07995 * 120.00324 * 180.23526 * 22 21 20 41 41 H 1.08003 * 119.99473 * 179.72172 * 23 22 21 42 42 H 1.08007 * 120.00048 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00382 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 6 0.0461 3.3226 2.6236 17 6 -1.1553 3.8816 2.7373 18 6 -1.5536 4.5564 4.0246 19 6 -1.9875 5.9944 3.7337 20 6 -2.3864 6.6689 5.0209 21 6 -3.6980 6.6116 5.4536 22 6 -4.0630 7.2262 6.6369 23 6 -3.1184 7.9070 7.3820 24 6 -1.8079 7.9688 6.9465 25 6 -1.4419 7.3497 5.7660 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2719 2.1232 1.9977 33 1 0.7358 3.3512 3.4542 34 1 -1.8452 3.8526 1.9069 35 1 -2.3814 4.0120 4.4791 36 1 -0.7048 4.5642 4.7085 37 1 -1.1598 6.5387 3.2791 38 1 -2.8362 5.9865 3.0498 39 1 -4.4368 6.0831 4.8695 40 1 -5.0869 7.1782 6.9769 41 1 -3.4045 8.3911 8.3041 42 1 -1.0700 8.5011 7.5285 43 1 -0.4180 7.3980 5.4258 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867420607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:46 Heat of formation + Delta-G solvation = -20.503979 kcal Electronic energy + Delta-G solvation = -21230.801151 eV Core-core repulsion = 18047.212122 eV Total energy + Delta-G solvation = -3183.589028 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.56930 -38.94177 -35.81092 -34.87735 -32.50832 -32.26012 -31.13366 -30.85889 -28.84420 -26.95730 -24.61874 -23.02414 -22.81861 -21.50148 -20.83842 -19.42836 -19.12020 -17.29595 -16.98707 -15.86002 -15.60793 -15.43149 -15.22145 -14.46894 -14.38812 -13.89215 -13.82423 -13.56726 -13.52023 -13.04027 -12.72953 -12.51862 -12.21234 -12.01266 -11.67845 -11.48939 -11.37719 -11.23900 -11.04447 -10.98039 -10.97037 -10.80478 -10.29862 -10.14146 -9.61650 -9.22157 -9.16967 -9.04420 -8.97614 -8.83616 -8.47884 -7.75259 -6.10487 -4.19702 1.09477 1.14876 1.78373 3.25122 3.32050 3.34265 3.53269 4.06164 4.16497 4.38378 4.58473 4.59047 4.75449 4.87513 4.92545 5.13768 5.18937 5.21348 5.26629 5.31380 5.38617 5.54820 5.66629 5.76069 5.82005 5.86734 6.00349 6.21865 6.26154 6.40675 6.42349 6.49501 6.63736 6.64235 6.70983 6.76458 7.08050 7.24231 7.40705 7.50984 7.65190 7.78242 7.93843 8.20990 8.73446 8.81346 9.20954 9.48010 10.94882 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.029369 B = 0.002462 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.152207 B =11372.377780 C =12076.944371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.528 3.472 15 O -0.555 6.555 16 C -0.199 4.199 17 C -0.090 4.090 18 C -0.087 4.087 19 C -0.080 4.080 20 C -0.078 4.078 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 11.817 17.356 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.315 3.685 15 O -0.436 6.436 16 C -0.220 4.220 17 C -0.110 4.110 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.078 4.078 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.572 11.672 16.466 23.265 hybrid contribution 1.368 -0.067 0.349 1.413 sum -10.204 11.606 16.815 22.838 Atomic orbital electron populations 1.21837 0.98357 0.97953 1.01267 1.21930 0.92630 0.99820 1.02219 1.18782 0.94157 0.89203 0.81158 0.93324 1.21245 0.90770 1.38917 1.06258 0.92119 1.24895 0.98593 0.94864 0.95399 1.69900 1.35081 1.37662 1.09331 0.86457 0.84921 0.78414 0.77355 1.20565 1.21086 1.19890 1.46429 1.14612 1.55520 1.18424 1.18476 0.82842 0.79454 0.87764 1.90741 1.51638 1.60623 1.40620 1.22919 0.98223 1.02659 0.98233 1.23548 0.96319 0.93305 0.97777 1.20749 1.01969 0.94362 0.95358 1.20593 1.02265 0.94829 0.94004 1.19962 0.93568 0.97541 0.96724 1.21103 0.95850 0.99927 0.96723 1.21153 0.99455 0.97997 0.95171 1.21143 0.93565 0.99974 0.99981 1.21162 0.96342 0.99655 0.96566 1.21120 0.99433 0.97878 0.95096 0.95924 0.93180 0.94239 0.95090 0.88322 0.92593 0.77953 0.86399 0.85655 0.90338 0.91045 0.90471 0.90467 0.85991 0.86198 0.86319 0.86163 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.71 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.70 -14.86 5.02 -56.12 -0.28 -15.14 16 14 C 0.53 10.66 6.33 -12.66 -0.08 10.58 16 15 O -0.56 -13.13 13.35 5.27 0.07 -13.06 16 16 C -0.20 -2.98 9.64 -37.81 -0.36 -3.35 16 17 C -0.09 -1.17 9.09 -36.13 -0.33 -1.50 16 18 C -0.09 -0.85 5.65 -27.88 -0.16 -1.01 16 19 C -0.08 -0.72 5.33 -27.88 -0.15 -0.87 16 20 C -0.08 -0.71 5.13 -104.63 -0.54 -1.25 16 21 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 23 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 28 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 7.13 8.52 -40.82 -0.35 6.78 16 33 H 0.12 1.45 7.87 -52.49 -0.41 1.03 16 34 H 0.13 1.80 7.49 -52.49 -0.39 1.41 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.66 7.82 -51.93 -0.41 0.26 16 37 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -30.74 357.11 -9.91 -40.64 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.73 Total: 7.29 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -3.96 Total: -16.54 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.34 Total: -39.40 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.07 Total: -13.06 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.74 -9.91 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867420607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.141 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds