Wall clock time and date at job start Tue Mar 31 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47626 * 2 1 4 4 H 1.09004 * 110.78040 * 51.75490 * 3 2 1 5 5 C 1.55158 * 110.71904 * 288.52133 * 3 2 1 6 6 C 1.55128 * 101.48343 * 205.96355 * 5 3 2 7 7 N 1.47424 * 104.72393 * 37.29945 * 6 5 3 8 8 C 1.34776 * 125.65160 * 155.81630 * 7 6 5 9 9 O 1.21601 * 120.00010 * 184.75356 * 8 7 6 10 10 C 1.47433 * 119.99809 * 4.75157 * 8 7 6 11 11 C 1.39225 * 120.28285 * 38.47115 * 10 8 7 12 12 C 1.38219 * 120.09264 * 179.97438 * 11 10 8 13 13 C 1.38827 * 120.67559 * 359.97438 * 12 11 10 14 14 C 1.37593 * 120.57409 * 0.02562 * 13 12 11 15 15 C 1.40714 * 119.87701 * 359.97438 * 14 13 12 16 16 C 1.40888 * 120.32485 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99857 * 210.52681 * 16 15 14 18 18 C 1.40271 * 120.00382 * 30.53087 * 16 15 14 19 19 N 1.30631 * 120.00051 * 11.93953 * 18 16 15 20 20 Si 1.86803 * 120.00016 * 191.94593 * 18 16 15 21 21 H 1.48491 * 109.47226 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47115 * 119.99822 * 20 18 16 23 23 H 1.48501 * 109.46782 * 239.99206 * 20 18 16 24 24 C 1.47025 * 108.69990 * 335.54700 * 7 6 5 25 25 H 1.08998 * 109.87917 * 120.86353 * 24 7 6 26 26 C 1.52995 * 109.88202 * 241.87266 * 24 7 6 27 27 H 1.09003 * 109.46659 * 60.00208 * 1 2 3 28 28 H 1.08994 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47224 * 300.00300 * 1 2 3 30 30 H 1.09000 * 109.47713 * 239.99844 * 2 1 3 31 31 H 1.08998 * 109.47290 * 120.00074 * 2 1 3 32 32 H 1.08993 * 111.00706 * 324.20627 * 5 3 2 33 33 H 1.09006 * 111.00309 * 88.02073 * 5 3 2 34 34 H 1.08995 * 110.50184 * 278.45171 * 6 5 3 35 35 H 1.09002 * 110.34215 * 156.06015 * 6 5 3 36 36 H 1.08003 * 119.95616 * 359.97438 * 11 10 8 37 37 H 1.08001 * 119.66030 * 180.28147 * 12 11 10 38 38 H 1.08004 * 119.71449 * 180.02562 * 13 12 11 39 39 H 1.07992 * 120.06673 * 180.02562 * 14 13 12 40 40 H 0.96994 * 120.00292 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.47484 * 58.54847 * 26 24 7 42 42 H 1.09006 * 109.47287 * 178.55099 * 26 24 7 43 43 H 1.09001 * 109.47332 * 298.54657 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5742 2.0174 0.8004 5 6 1.7885 2.1136 -1.3761 6 6 2.9044 3.1909 -1.4029 7 7 4.0638 2.5454 -0.7605 8 6 5.3550 2.8820 -0.9499 9 8 6.2371 2.2237 -0.4330 10 6 5.6980 4.0484 -1.7839 11 6 4.9205 5.2021 -1.7313 12 6 5.2459 6.2935 -2.5145 13 6 6.3466 6.2557 -3.3596 14 6 7.1341 5.1298 -3.4334 15 6 6.8244 4.0051 -2.6466 16 6 7.6239 2.8471 -2.7151 17 1 7.1832 1.8758 -2.5457 18 6 8.9924 2.9556 -3.0033 19 7 9.5746 4.1248 -2.9780 20 14 9.9825 1.4282 -3.4233 21 1 9.0962 0.2374 -3.3837 22 1 10.5597 1.5712 -4.7841 23 1 11.0789 1.2619 -2.4356 24 6 3.5777 1.4779 0.1259 25 1 3.9993 0.5207 -0.1809 26 6 3.9746 1.7814 1.5720 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.9123 1.3977 -2.1885 33 1 0.8012 2.5745 -1.4113 34 1 2.5989 4.0712 -0.8375 35 1 3.1434 3.4634 -2.4309 36 1 4.0618 5.2444 -1.0776 37 1 4.6406 7.1865 -2.4648 38 1 6.5870 7.1176 -3.9645 39 1 7.9886 5.1095 -4.0934 40 1 10.5209 4.1998 -3.1769 41 1 3.5564 2.7429 1.8694 42 1 3.5890 0.9995 2.2263 43 1 5.0611 1.8178 1.6506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634531650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:50 Heat of formation + Delta-G solvation = -30.956395 kcal Electronic energy + Delta-G solvation = -23240.839672 eV Core-core repulsion = 20056.797393 eV Total energy + Delta-G solvation = -3184.042279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.79111 -37.77300 -36.38512 -33.96205 -33.52320 -31.34151 -30.19027 -29.78552 -28.89804 -25.74855 -25.40358 -23.12275 -22.68020 -21.18067 -20.85291 -19.93817 -18.37837 -17.20260 -16.20484 -15.97115 -15.34555 -14.68116 -14.58947 -14.28237 -13.96429 -13.62850 -13.35643 -13.26302 -12.81544 -12.59738 -12.45226 -12.37734 -12.08887 -11.84260 -11.70756 -11.52277 -11.33829 -11.16678 -11.12623 -10.98296 -10.78321 -10.60397 -10.51634 -10.41900 -10.29156 -9.89807 -9.60436 -9.25328 -8.57166 -7.96110 -7.52667 -7.39378 -6.79083 -4.38602 2.47494 2.82395 3.09752 3.17938 3.22363 3.71549 3.96547 4.04288 4.55043 4.63095 4.72011 4.81266 5.15216 5.31163 5.34580 5.43380 5.49108 5.61536 5.65659 5.73365 5.78475 5.82651 5.87724 5.98927 5.99067 6.06429 6.10767 6.17358 6.20166 6.30117 6.36273 6.43593 6.57253 6.58908 6.99602 7.09255 7.14344 7.24772 7.48785 7.69803 7.92301 7.99752 8.18318 8.36670 8.60582 8.81313 8.88733 9.34574 10.15543 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.005274 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.031689 B = 5307.550960 C = 6313.012174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.096 4.096 4 H 0.082 0.918 5 C -0.130 4.130 6 C 0.107 3.893 7 N -0.626 5.626 8 C 0.592 3.408 9 O -0.534 6.534 10 C -0.255 4.255 11 C -0.059 4.059 12 C -0.249 4.249 13 C -0.093 4.093 14 C -0.155 4.155 15 C 0.147 3.853 16 C -0.423 4.423 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.789 5.789 20 Si 0.914 3.086 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.273 1.273 24 C 0.140 3.860 25 H 0.069 0.931 26 C -0.160 4.160 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.282 0.718 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.643 -3.998 2.643 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.115 4.115 4 H 0.100 0.900 5 C -0.168 4.168 6 C -0.016 4.016 7 N -0.363 5.363 8 C 0.386 3.614 9 O -0.411 6.411 10 C -0.259 4.259 11 C -0.078 4.078 12 C -0.268 4.268 13 C -0.112 4.112 14 C -0.174 4.174 15 C 0.144 3.856 16 C -0.452 4.452 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.414 5.414 20 Si 0.738 3.262 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.198 1.198 24 C 0.036 3.964 25 H 0.087 0.913 26 C -0.218 4.218 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.804 -4.232 2.887 13.791 hybrid contribution 0.498 -0.393 -0.064 0.638 sum -12.306 -4.625 2.823 13.446 Atomic orbital electron populations 1.21755 0.95749 1.01379 1.01827 1.21507 0.95776 0.95590 1.02282 1.22345 0.94477 0.96646 0.98058 0.89989 1.22933 0.98458 0.98267 0.97100 1.22300 0.85545 0.94956 0.98831 1.48645 1.05707 1.35866 1.46035 1.18206 0.79347 0.84106 0.79706 1.90686 1.46414 1.53834 1.50167 1.19418 1.04930 0.94650 1.06924 1.20735 0.96699 0.93360 0.96959 1.20263 1.02198 0.98517 1.05850 1.20789 0.95257 0.97084 0.98100 1.21319 1.00561 0.93873 1.01691 1.17410 0.88623 0.92663 0.86952 1.19711 0.92613 0.94817 1.38034 0.89781 1.25994 0.98626 0.97484 0.92275 1.69717 1.12434 1.25171 1.34061 0.86162 0.79530 0.82020 0.78507 1.18268 1.19742 1.19772 1.21420 0.92589 0.91899 0.90475 0.91298 1.22119 1.03293 1.00871 0.95541 0.92580 0.92948 0.92848 0.91691 0.91849 0.90715 0.90475 0.92244 0.90218 0.88869 0.89217 0.89180 0.86275 0.90712 0.92930 0.92518 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.80 37.15 0.36 -0.84 16 2 C -0.11 -1.12 5.29 -26.74 -0.14 -1.26 16 3 C -0.10 -1.11 2.45 -88.79 -0.22 -1.33 16 4 H 0.08 0.88 7.85 -51.93 -0.41 0.48 16 5 C -0.13 -1.50 5.95 -24.46 -0.15 -1.64 16 6 C 0.11 1.62 5.25 -2.41 -0.01 1.60 16 7 N -0.63 -11.75 3.06 -164.14 -0.50 -12.26 16 8 C 0.59 14.18 6.77 -12.52 -0.08 14.10 16 9 O -0.53 -14.55 14.34 5.28 0.08 -14.48 16 10 C -0.25 -6.35 5.41 -104.37 -0.56 -6.91 16 11 C -0.06 -1.29 8.19 -39.22 -0.32 -1.61 16 12 C -0.25 -5.38 10.03 -39.37 -0.39 -5.78 16 13 C -0.09 -2.14 10.01 -39.60 -0.40 -2.53 16 14 C -0.16 -3.99 8.64 -38.88 -0.34 -4.32 16 15 C 0.15 4.00 5.54 -106.54 -0.59 3.41 16 16 C -0.42 -11.76 7.70 -37.82 -0.29 -12.05 16 17 H 0.08 2.41 6.80 -52.49 -0.36 2.05 16 18 C 0.07 1.95 5.22 -17.30 -0.09 1.86 16 19 N -0.79 -20.74 11.03 55.56 0.61 -20.12 16 20 Si 0.91 19.75 29.58 -169.99 -5.03 14.72 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C 0.14 2.19 3.03 -66.96 -0.20 1.99 16 25 H 0.07 1.17 7.83 -51.93 -0.41 0.76 16 26 C -0.16 -2.44 9.11 37.16 0.34 -2.10 16 27 H 0.06 0.44 7.69 -51.93 -0.40 0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.67 8.00 -51.93 -0.42 0.26 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.84 6.98 -51.93 -0.36 0.47 16 35 H 0.08 1.30 7.31 -51.93 -0.38 0.92 16 36 H 0.09 1.79 5.94 -52.48 -0.31 1.48 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.12 3.12 6.40 -52.49 -0.34 2.79 16 40 H 0.28 6.69 8.29 -40.82 -0.34 6.36 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.29 7.05 -51.93 -0.37 0.93 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -30.17 340.76 -9.46 -39.63 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.67 Total: 4.80 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -3.09 Total: -17.43 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.11 Total: -32.38 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.48 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.17 -9.46 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634531650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.676 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds