Wall clock time and date at job start Tue Mar 31 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47626 * 2 1 4 4 H 1.09004 * 110.78040 * 51.75490 * 3 2 1 5 5 C 1.55158 * 110.71904 * 288.52133 * 3 2 1 6 6 C 1.55128 * 101.48343 * 205.96355 * 5 3 2 7 7 N 1.47424 * 104.72393 * 37.29945 * 6 5 3 8 8 C 1.34776 * 125.65160 * 155.81630 * 7 6 5 9 9 O 1.21601 * 120.00010 * 184.75356 * 8 7 6 10 10 C 1.47433 * 119.99809 * 4.75157 * 8 7 6 11 11 C 1.39225 * 120.28285 * 38.47115 * 10 8 7 12 12 C 1.38219 * 120.09264 * 179.97438 * 11 10 8 13 13 C 1.38827 * 120.67559 * 359.97438 * 12 11 10 14 14 C 1.37593 * 120.57409 * 0.02562 * 13 12 11 15 15 C 1.40714 * 119.87701 * 359.97438 * 14 13 12 16 16 C 1.40888 * 120.32485 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99857 * 210.52681 * 16 15 14 18 18 C 1.40271 * 120.00382 * 30.53087 * 16 15 14 19 19 N 1.30631 * 120.00051 * 11.93953 * 18 16 15 20 20 Si 1.86803 * 120.00016 * 191.94593 * 18 16 15 21 21 H 1.48491 * 109.47226 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47115 * 119.99822 * 20 18 16 23 23 H 1.48501 * 109.46782 * 239.99206 * 20 18 16 24 24 C 1.47025 * 108.69990 * 335.54700 * 7 6 5 25 25 H 1.08998 * 109.87917 * 120.86353 * 24 7 6 26 26 C 1.52995 * 109.88202 * 241.87266 * 24 7 6 27 27 H 1.09003 * 109.46659 * 60.00208 * 1 2 3 28 28 H 1.08994 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47224 * 300.00300 * 1 2 3 30 30 H 1.09000 * 109.47713 * 239.99844 * 2 1 3 31 31 H 1.08998 * 109.47290 * 120.00074 * 2 1 3 32 32 H 1.08993 * 111.00706 * 324.20627 * 5 3 2 33 33 H 1.09006 * 111.00309 * 88.02073 * 5 3 2 34 34 H 1.08995 * 110.50184 * 278.45171 * 6 5 3 35 35 H 1.09002 * 110.34215 * 156.06015 * 6 5 3 36 36 H 1.08003 * 119.95616 * 359.97438 * 11 10 8 37 37 H 1.08001 * 119.66030 * 180.28147 * 12 11 10 38 38 H 1.08004 * 119.71449 * 180.02562 * 13 12 11 39 39 H 1.07992 * 120.06673 * 180.02562 * 14 13 12 40 40 H 0.96994 * 120.00292 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.47484 * 58.54847 * 26 24 7 42 42 H 1.09006 * 109.47287 * 178.55099 * 26 24 7 43 43 H 1.09001 * 109.47332 * 298.54657 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5742 2.0174 0.8004 5 6 1.7885 2.1136 -1.3761 6 6 2.9044 3.1909 -1.4029 7 7 4.0638 2.5454 -0.7605 8 6 5.3550 2.8820 -0.9499 9 8 6.2371 2.2237 -0.4330 10 6 5.6980 4.0484 -1.7839 11 6 4.9205 5.2021 -1.7313 12 6 5.2459 6.2935 -2.5145 13 6 6.3466 6.2557 -3.3596 14 6 7.1341 5.1298 -3.4334 15 6 6.8244 4.0051 -2.6466 16 6 7.6239 2.8471 -2.7151 17 1 7.1832 1.8758 -2.5457 18 6 8.9924 2.9556 -3.0033 19 7 9.5746 4.1248 -2.9780 20 14 9.9825 1.4282 -3.4233 21 1 9.0962 0.2374 -3.3837 22 1 10.5597 1.5712 -4.7841 23 1 11.0789 1.2619 -2.4356 24 6 3.5777 1.4779 0.1259 25 1 3.9993 0.5207 -0.1809 26 6 3.9746 1.7814 1.5720 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.9123 1.3977 -2.1885 33 1 0.8012 2.5745 -1.4113 34 1 2.5989 4.0712 -0.8375 35 1 3.1434 3.4634 -2.4309 36 1 4.0618 5.2444 -1.0776 37 1 4.6406 7.1865 -2.4648 38 1 6.5870 7.1176 -3.9645 39 1 7.9886 5.1095 -4.0934 40 1 10.5209 4.1998 -3.1769 41 1 3.5564 2.7429 1.8694 42 1 3.5890 0.9995 2.2263 43 1 5.0611 1.8178 1.6506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634531650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:50 Heat of formation + Delta-G solvation = -47.141745 kcal Electronic energy + Delta-G solvation = -23241.541521 eV Core-core repulsion = 20056.797393 eV Total energy + Delta-G solvation = -3184.744128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27922 -39.38375 -38.15123 -35.68734 -34.86550 -32.66108 -31.78758 -31.48184 -30.38742 -27.35678 -26.77145 -24.74562 -23.69090 -22.87822 -22.42628 -21.05570 -20.00705 -19.10277 -17.83192 -17.31743 -17.21506 -16.28345 -15.96548 -15.67074 -15.24757 -15.01912 -14.81709 -14.53123 -14.47113 -14.25646 -13.89214 -13.53105 -13.51987 -13.20115 -13.01099 -12.97722 -12.86224 -12.65592 -12.60797 -12.41892 -12.26442 -12.01249 -11.82317 -11.54266 -11.50978 -11.40877 -11.26925 -11.15038 -10.41275 -9.57734 -9.35931 -9.27607 -8.70586 -6.40372 0.59967 0.99486 1.29424 1.44435 1.45241 2.14793 2.16911 2.29762 2.71145 3.51029 3.66336 3.67459 3.86593 4.20956 4.22469 4.29451 4.37570 4.42211 4.48479 4.54053 4.60932 4.67334 4.69145 4.79637 4.85883 4.90594 4.97573 5.07217 5.08314 5.13952 5.20581 5.22693 5.27377 5.29848 5.33799 5.44364 5.56728 5.57794 5.70068 5.85174 6.02885 6.09234 6.29484 6.57016 6.73806 6.87214 6.94452 7.55937 8.26565 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.005274 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.031689 B = 5307.550960 C = 6313.012174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.081 4.081 4 H 0.103 0.897 5 C -0.118 4.118 6 C 0.097 3.903 7 N -0.623 5.623 8 C 0.583 3.417 9 O -0.585 6.585 10 C -0.272 4.272 11 C -0.056 4.056 12 C -0.236 4.236 13 C -0.091 4.091 14 C -0.182 4.182 15 C 0.115 3.885 16 C -0.463 4.463 17 H 0.057 0.943 18 C 0.036 3.964 19 N -0.819 5.819 20 Si 0.978 3.022 21 H -0.271 1.271 22 H -0.249 1.249 23 H -0.267 1.267 24 C 0.129 3.871 25 H 0.046 0.954 26 C -0.153 4.153 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.291 0.709 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.831 -3.125 3.036 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.121 0.879 5 C -0.156 4.156 6 C -0.025 4.025 7 N -0.357 5.357 8 C 0.377 3.623 9 O -0.465 6.465 10 C -0.277 4.277 11 C -0.074 4.074 12 C -0.255 4.255 13 C -0.109 4.109 14 C -0.201 4.201 15 C 0.112 3.888 16 C -0.492 4.492 17 H 0.075 0.925 18 C -0.179 4.179 19 N -0.445 5.445 20 Si 0.799 3.201 21 H -0.195 1.195 22 H -0.173 1.173 23 H -0.191 1.191 24 C 0.026 3.974 25 H 0.064 0.936 26 C -0.211 4.211 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -16.056 -3.338 3.269 16.722 hybrid contribution 1.309 -0.562 -0.126 1.430 sum -14.748 -3.900 3.143 15.575 Atomic orbital electron populations 1.21721 0.93770 1.02169 1.02583 1.21497 0.97345 0.94137 1.02006 1.22320 0.90658 0.98251 0.98735 0.87883 1.22938 0.98730 0.97058 0.96848 1.22606 0.85129 0.96837 0.97940 1.48609 1.05055 1.36183 1.45849 1.18220 0.80774 0.83882 0.79448 1.90642 1.48494 1.55235 1.52179 1.19785 1.04922 0.96390 1.06582 1.21067 0.97024 0.92201 0.97104 1.20768 1.01398 0.99506 1.03817 1.21164 0.94795 0.96858 0.98125 1.21278 1.01412 0.95011 1.02395 1.17779 0.89754 0.93251 0.88025 1.19656 0.94110 0.94087 1.41366 0.92523 1.26702 0.98904 1.00526 0.91798 1.69736 1.13126 1.26612 1.35054 0.85238 0.77756 0.77782 0.79374 1.19516 1.17286 1.19133 1.21727 0.95746 0.89880 0.90020 0.93554 1.22050 1.00582 1.02562 0.95920 0.92008 0.92283 0.91842 0.92746 0.91611 0.91198 0.86707 0.90143 0.91721 0.85618 0.84988 0.86135 0.87849 0.89866 0.91934 0.89437 0.95442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.80 71.98 0.71 -1.08 16 2 C -0.11 -1.90 5.29 30.59 0.16 -1.74 16 3 C -0.08 -1.63 2.45 -9.61 -0.02 -1.65 16 4 H 0.10 1.73 7.85 -2.38 -0.02 1.71 16 5 C -0.12 -2.34 5.95 32.06 0.19 -2.15 16 6 C 0.10 2.72 5.25 86.93 0.46 3.18 16 7 N -0.62 -23.50 3.06 -791.47 -2.42 -25.92 16 8 C 0.58 29.18 6.77 86.67 0.59 29.77 16 9 O -0.58 -34.17 14.34 -4.04 -0.06 -34.23 16 10 C -0.27 -13.95 5.41 -19.70 -0.11 -14.05 16 11 C -0.06 -2.35 8.19 22.50 0.18 -2.17 16 12 C -0.24 -9.50 10.03 22.41 0.22 -9.27 16 13 C -0.09 -4.04 10.01 22.26 0.22 -3.81 16 14 C -0.18 -9.61 8.64 22.72 0.20 -9.41 16 15 C 0.12 6.57 5.54 -21.11 -0.12 6.46 16 16 C -0.46 -27.59 7.70 23.41 0.18 -27.41 16 17 H 0.06 3.55 6.80 -2.91 -0.02 3.53 16 18 C 0.04 1.97 5.22 85.37 0.45 2.41 16 19 N -0.82 -45.02 11.03 21.88 0.24 -44.77 16 20 Si 0.98 42.55 29.58 68.60 2.03 44.58 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 C 0.13 4.01 3.03 45.34 0.14 4.14 16 25 H 0.05 1.63 7.83 -2.39 -0.02 1.62 16 26 C -0.15 -4.60 9.11 71.98 0.66 -3.95 16 27 H 0.06 0.70 7.69 -2.39 -0.02 0.68 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 1.04 8.00 -2.39 -0.02 1.02 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.49 7.94 -2.39 -0.02 1.47 16 33 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 1.95 6.98 -2.39 -0.02 1.93 16 35 H 0.06 2.02 7.31 -2.39 -0.02 2.01 16 36 H 0.13 4.42 5.94 -2.91 -0.02 4.40 16 37 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.10 5.69 6.40 -2.91 -0.02 5.67 16 40 H 0.29 14.29 8.29 -92.71 -0.77 13.53 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.03 1.04 7.05 -2.39 -0.02 1.03 16 Total: -1.00 -72.01 340.76 4.88 -67.13 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.99 Total: 23.94 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 4.10 Total: -30.74 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -2.18 Total: -70.70 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.06 Total: -34.23 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -72.01 4.88 -67.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634531650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.993 kcal (2) G-P(sol) polarization free energy of solvation -72.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds