Wall clock time and date at job start Tue Mar 31 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.70307 * 2 1 4 4 C 1.53628 * 109.66399 * 120.59539 * 2 1 3 5 5 C 1.53042 * 109.24052 * 174.54942 * 4 2 1 6 6 C 1.53040 * 109.53586 * 298.50875 * 5 4 2 7 7 C 1.53191 * 109.31511 * 61.36482 * 6 5 4 8 8 H 1.08996 * 109.58752 * 185.57345 * 7 6 5 9 9 C 1.53005 * 109.58613 * 65.15059 * 7 6 5 10 10 N 1.46924 * 109.58318 * 239.64319 * 2 1 3 11 11 C 1.34772 * 120.63297 * 6.63202 * 10 2 1 12 12 O 1.21546 * 120.00358 * 3.48358 * 11 10 2 13 13 C 1.47890 * 120.00109 * 183.48832 * 11 10 2 14 14 C 1.39916 * 120.02514 * 325.55913 * 13 11 10 15 15 C 1.38333 * 120.35910 * 180.02562 * 14 13 11 16 16 C 1.37750 * 120.41320 * 359.97438 * 15 14 13 17 17 C 1.40759 * 120.03458 * 359.72301 * 16 15 14 18 18 C 1.41436 * 120.17366 * 180.30092 * 17 16 15 19 19 H 1.08003 * 120.00427 * 328.21211 * 18 17 16 20 20 C 1.39939 * 119.99822 * 148.20900 * 18 17 16 21 21 N 1.30834 * 119.99971 * 162.66446 * 20 18 17 22 22 Si 1.86798 * 120.00111 * 342.67104 * 20 18 17 23 23 H 1.48498 * 109.47393 * 94.01674 * 22 20 18 24 24 H 1.48498 * 109.47315 * 214.01803 * 22 20 18 25 25 H 1.48502 * 109.46920 * 334.01493 * 22 20 18 26 26 C 1.39001 * 120.02320 * 145.57499 * 13 11 10 27 27 H 1.09000 * 109.47077 * 174.75277 * 1 2 3 28 28 H 1.09000 * 109.46823 * 294.75019 * 1 2 3 29 29 H 1.08997 * 109.47254 * 54.74914 * 1 2 3 30 30 H 1.09001 * 109.63714 * 54.55499 * 4 2 1 31 31 H 1.09001 * 109.42888 * 294.41414 * 4 2 1 32 32 H 1.08996 * 109.46041 * 178.49152 * 5 4 2 33 33 H 1.08997 * 109.45198 * 58.51928 * 5 4 2 34 34 H 1.08999 * 109.49957 * 301.41158 * 6 5 4 35 35 H 1.09005 * 109.49586 * 181.31574 * 6 5 4 36 36 H 1.08998 * 109.47152 * 300.71018 * 9 7 6 37 37 H 1.09002 * 109.46757 * 60.71165 * 9 7 6 38 38 H 1.08997 * 109.47305 * 180.71361 * 9 7 6 39 39 H 1.08003 * 119.82069 * 0.03971 * 14 13 11 40 40 H 1.08001 * 119.79124 * 179.97438 * 15 14 13 41 41 H 1.07990 * 119.98325 * 180.02562 * 16 15 14 42 42 H 0.96998 * 119.99516 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.20352 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7363 1.2453 5 6 3.5712 -0.8498 1.1676 6 6 3.9615 -1.6628 -0.0689 7 6 3.4656 -0.9421 -1.3264 8 1 3.6532 -1.5637 -2.2018 9 6 4.1985 0.3928 -1.4752 10 7 2.0225 -0.6996 -1.1945 11 6 1.1674 -1.1061 -2.1536 12 8 -0.0153 -0.8397 -2.0662 13 6 1.6680 -1.8766 -3.3124 14 6 2.9386 -1.6099 -3.8343 15 6 3.4135 -2.3260 -4.9184 16 6 2.6419 -3.3099 -5.4964 17 6 1.3637 -3.5966 -4.9811 18 6 0.5716 -4.6105 -5.5683 19 1 0.6474 -4.8101 -6.6270 20 6 -0.3106 -5.3553 -4.7774 21 7 -1.2729 -6.0410 -5.3390 22 14 -0.1142 -5.3702 -2.9198 23 1 -0.9857 -4.3273 -2.3215 24 1 -0.5027 -6.7026 -2.3916 25 1 1.3019 -5.0926 -2.5695 26 6 0.8766 -2.8659 -3.8842 27 1 -0.3633 -1.0234 -0.0940 28 1 -0.3633 0.4303 0.9333 29 1 -0.3633 0.5931 -0.8392 30 1 1.6096 -1.7338 1.2890 31 1 1.7689 -0.1772 2.1387 32 1 3.9443 -1.3481 2.0623 33 1 4.0064 0.1471 1.0988 34 1 3.5062 -2.6515 -0.0129 35 1 5.0461 -1.7631 -0.1109 36 1 4.0135 1.0089 -0.5952 37 1 5.2687 0.2107 -1.5729 38 1 3.8352 0.9097 -2.3634 39 1 3.5519 -0.8410 -3.3882 40 1 4.3954 -2.1123 -5.3141 41 1 3.0197 -3.8649 -6.3422 42 1 -1.8841 -6.5575 -4.7908 43 1 -0.1047 -3.0752 -3.4845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058242623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:34 Heat of formation + Delta-G solvation = 2.917982 kcal Electronic energy + Delta-G solvation = -23909.195096 eV Core-core repulsion = 20726.621721 eV Total energy + Delta-G solvation = -3182.573376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58593 -37.84653 -37.11986 -34.09713 -33.20992 -32.63317 -30.47720 -30.15227 -28.73791 -26.45262 -25.38506 -23.82480 -22.80450 -21.65277 -21.13453 -20.12086 -18.41225 -17.54017 -16.08737 -16.01746 -15.80031 -15.16198 -14.81416 -14.29433 -14.08264 -14.01605 -13.69595 -13.37416 -13.00822 -12.88531 -12.71106 -12.67519 -12.28723 -12.11452 -11.78238 -11.67957 -11.55556 -11.50297 -11.02812 -10.87961 -10.86645 -10.76438 -10.58049 -10.44164 -10.19510 -9.88181 -9.71232 -9.20904 -8.60853 -8.28804 -7.84001 -7.67648 -6.99124 -4.55530 1.99148 2.52163 3.10880 3.16175 3.26484 3.26841 3.55713 3.95603 4.41521 4.68749 4.79875 4.84313 5.01948 5.18303 5.21278 5.31501 5.40574 5.45609 5.47991 5.63590 5.71191 5.82659 5.85024 5.88178 5.91894 5.96248 5.99361 6.05205 6.11201 6.19390 6.30614 6.43900 6.46978 6.57605 6.60297 6.74075 6.98718 7.01411 7.19232 7.39540 7.50341 7.65329 7.87593 7.97191 8.26540 8.51575 8.72358 8.73626 10.03102 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.006294 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.733055 B = 4447.881619 C = 5074.879428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.144 3.856 3 H 0.066 0.934 4 C -0.131 4.131 5 C -0.120 4.120 6 C -0.130 4.130 7 C 0.090 3.910 8 H 0.144 0.856 9 C -0.163 4.163 10 N -0.602 5.602 11 C 0.562 3.438 12 O -0.538 6.538 13 C -0.095 4.095 14 C -0.237 4.237 15 C -0.089 4.089 16 C -0.192 4.192 17 C 0.086 3.914 18 C -0.446 4.446 19 H 0.094 0.906 20 C 0.087 3.913 21 N -0.804 5.804 22 Si 0.900 3.100 23 H -0.263 1.263 24 H -0.287 1.287 25 H -0.246 1.246 26 C -0.174 4.174 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.286 0.714 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.992 8.637 11.449 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.170 4.170 5 C -0.157 4.157 6 C -0.168 4.168 7 C -0.012 4.012 8 H 0.161 0.839 9 C -0.221 4.221 10 N -0.336 5.336 11 C 0.354 3.646 12 O -0.416 6.416 13 C -0.098 4.098 14 C -0.256 4.256 15 C -0.107 4.107 16 C -0.211 4.211 17 C 0.083 3.917 18 C -0.475 4.475 19 H 0.112 0.888 20 C -0.133 4.133 21 N -0.428 5.428 22 Si 0.726 3.274 23 H -0.189 1.189 24 H -0.214 1.214 25 H -0.169 1.169 26 C -0.194 4.194 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.109 8.583 11.462 16.971 hybrid contribution -0.004 -0.116 0.851 0.859 sum 9.105 8.467 12.313 17.499 Atomic orbital electron populations 1.22210 0.92820 1.03967 1.00466 1.21269 0.95612 0.94788 0.84228 0.91617 1.22085 0.96015 1.01412 0.97442 1.21551 0.95736 1.00487 0.97957 1.21935 1.00887 0.99476 0.94510 1.22448 0.79546 0.97783 1.01447 0.83933 1.22156 1.00222 0.97519 1.02155 1.48071 1.07045 1.58376 1.20074 1.18872 0.85351 0.78135 0.82269 1.90754 1.16716 1.56623 1.77545 1.19456 0.95630 0.98614 0.96098 1.20877 0.96248 1.06294 1.02175 1.20606 0.98345 0.96122 0.95654 1.21196 0.94587 1.01817 1.03541 1.17707 0.91316 0.92113 0.90587 1.19483 1.16122 1.13999 0.97860 0.88789 1.26108 0.92072 0.93430 1.01666 1.69679 1.10822 1.22889 1.39400 0.86466 0.81685 0.77175 0.82079 1.18899 1.21432 1.16943 1.21205 0.99015 0.98279 1.00919 0.91544 0.94421 0.90325 0.91546 0.91257 0.92103 0.91748 0.91504 0.90949 0.92373 0.91532 0.92120 0.86274 0.88148 0.87773 0.90316 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 7.61 37.16 0.28 -1.88 16 2 C 0.14 2.03 3.09 -67.37 -0.21 1.82 16 3 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 4 C -0.13 -1.55 5.40 -26.38 -0.14 -1.69 16 5 C -0.12 -1.24 5.68 -26.69 -0.15 -1.39 16 6 C -0.13 -1.53 5.55 -26.61 -0.15 -1.68 16 7 C 0.09 1.23 2.37 -67.60 -0.16 1.07 16 8 H 0.14 2.19 3.47 -53.80 -0.19 2.01 16 9 C -0.16 -1.79 8.37 37.16 0.31 -1.48 16 10 N -0.60 -9.89 2.68 -158.56 -0.42 -10.31 16 11 C 0.56 11.72 7.27 -12.31 -0.09 11.63 16 12 O -0.54 -12.46 12.30 5.32 0.07 -12.40 16 13 C -0.09 -2.10 5.51 -105.03 -0.58 -2.68 16 14 C -0.24 -4.54 7.45 -38.92 -0.29 -4.83 16 15 C -0.09 -1.71 10.01 -39.72 -0.40 -2.11 16 16 C -0.19 -4.24 9.78 -38.81 -0.38 -4.61 16 17 C 0.09 2.15 5.05 -106.87 -0.54 1.61 16 18 C -0.45 -11.99 9.56 -37.73 -0.36 -12.35 16 19 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 20 C 0.09 2.30 5.40 -17.34 -0.09 2.20 16 21 N -0.80 -21.60 13.93 55.55 0.77 -20.82 16 22 Si 0.90 21.33 24.57 -169.99 -4.18 17.16 16 23 H -0.26 -6.41 6.68 56.52 0.38 -6.03 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.25 -5.86 6.94 56.52 0.39 -5.47 16 26 C -0.17 -4.34 6.76 -38.44 -0.26 -4.60 16 27 H 0.07 1.22 6.90 -51.93 -0.36 0.86 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.39 6.58 -51.93 -0.34 1.05 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.60 6.49 -51.93 -0.34 0.27 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.59 5.71 -51.93 -0.30 0.30 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 39 H 0.12 1.92 4.20 -52.48 -0.22 1.70 16 40 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.29 7.00 8.30 -40.82 -0.34 6.66 16 43 H 0.11 2.92 4.86 -52.49 -0.26 2.67 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -28.56 321.81 -8.29 -36.86 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.17 Total: 5.63 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -3.21 Total: -20.96 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.35 Total: -31.14 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.18 Total: 17.16 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.56 -8.29 -36.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.774 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds