Wall clock time and date at job start Tue Mar 31 2020 06:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.01597 * 2 1 4 4 C 1.54262 * 110.03065 * 238.61121 * 2 1 3 5 5 C 1.54966 * 104.16137 * 217.13191 * 4 2 1 6 6 C 1.54895 * 102.77239 * 37.89251 * 5 4 2 7 7 H 1.08993 * 110.48602 * 80.76222 * 6 5 4 8 8 N 1.46501 * 110.48115 * 203.40203 * 6 5 4 9 9 C 1.46504 * 119.99816 * 54.77778 * 8 6 5 10 10 C 1.34770 * 120.00249 * 234.77035 * 8 6 5 11 11 O 1.21591 * 119.99651 * 355.48454 * 10 8 6 12 12 C 1.47636 * 120.00491 * 175.47976 * 10 8 6 13 13 C 1.40015 * 119.89759 * 221.70995 * 12 10 8 14 14 C 1.36320 * 120.10840 * 179.75452 * 13 12 10 15 15 C 1.40889 * 119.88638 * 0.51931 * 14 13 12 16 16 C 1.41109 * 120.09633 * 179.71690 * 15 14 13 17 17 H 1.08005 * 119.99502 * 209.13851 * 16 15 14 18 18 C 1.40224 * 120.00448 * 29.14313 * 16 15 14 19 19 N 1.30644 * 120.00168 * 10.54388 * 18 16 15 20 20 Si 1.86801 * 120.00005 * 190.54806 * 18 16 15 21 21 H 1.48500 * 109.47403 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47290 * 119.99960 * 20 18 16 23 23 H 1.48505 * 109.46968 * 239.99757 * 20 18 16 24 24 C 1.40885 * 119.79940 * 359.73325 * 15 14 13 25 25 C 1.36324 * 119.88614 * 0.02562 * 24 15 14 26 26 C 1.53879 * 110.03292 * 121.39399 * 2 1 3 27 27 H 1.09000 * 109.47035 * 299.29435 * 1 2 3 28 28 H 1.08996 * 109.47165 * 179.29777 * 1 2 3 29 29 H 1.08994 * 109.47493 * 59.29372 * 1 2 3 30 30 H 1.08998 * 110.48810 * 335.78251 * 4 2 1 31 31 H 1.09007 * 110.48778 * 98.42754 * 4 2 1 32 32 H 1.08999 * 110.72268 * 279.57618 * 5 4 2 33 33 H 1.08999 * 110.92202 * 156.29379 * 5 4 2 34 34 H 1.08997 * 109.47205 * 95.25344 * 9 8 6 35 35 H 1.09002 * 109.46590 * 215.24739 * 9 8 6 36 36 H 1.08994 * 109.47549 * 335.24955 * 9 8 6 37 37 H 1.08002 * 119.94649 * 0.02562 * 13 12 10 38 38 H 1.07995 * 120.05563 * 180.23268 * 14 13 12 39 39 H 0.96998 * 120.00275 * 179.97438 * 19 18 16 40 40 H 1.07991 * 120.05557 * 179.97438 * 24 15 14 41 41 H 1.08003 * 119.93909 * 179.97438 * 25 24 15 42 42 H 1.08996 * 110.02918 * 238.56605 * 26 2 1 43 43 H 1.08997 * 110.02969 * 359.95026 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7549 -1.2372 5 6 3.3137 -1.5010 -0.7186 6 6 2.8875 -1.9404 0.7043 7 1 2.2772 -2.8423 0.6582 8 7 4.0653 -2.1592 1.5476 9 6 5.0600 -1.0955 1.7068 10 6 4.2337 -3.3390 2.1770 11 8 3.3692 -4.1916 2.1117 12 6 5.4677 -3.5962 2.9455 13 6 6.0935 -4.8460 2.8630 14 6 7.2358 -5.0865 3.5670 15 6 7.7805 -4.0786 4.3869 16 6 8.9595 -4.3248 5.1221 17 1 9.1304 -3.8108 6.0565 18 6 9.9092 -5.2367 4.6397 19 7 9.8089 -5.7020 3.4230 20 14 11.3179 -5.7862 5.7366 21 1 11.2062 -5.1179 7.0580 22 1 11.2575 -7.2587 5.9194 23 1 12.6102 -5.4185 5.1041 24 6 7.1443 -2.8244 4.4709 25 6 6.0051 -2.5916 3.7593 26 6 2.0572 -0.7531 1.2341 27 1 -0.3633 0.5028 0.8963 28 1 -0.3633 -1.0275 -0.0126 29 1 -0.3634 0.5247 -0.8835 30 1 1.3142 -1.4652 -1.5973 31 1 2.3297 -0.0526 -2.0255 32 1 4.1710 -0.8292 -0.6749 33 1 3.5357 -2.3682 -1.3404 34 1 4.8441 -0.5288 2.6125 35 1 6.0541 -1.5361 1.7822 36 1 5.0219 -0.4303 0.8442 37 1 5.6729 -5.6193 2.2373 38 1 7.7199 -6.0496 3.4998 39 1 10.4661 -6.3325 3.0891 40 1 7.5581 -2.0490 5.0984 41 1 5.5164 -1.6306 3.8233 42 1 2.6868 -0.0947 1.8324 43 1 1.2230 -1.1178 1.8333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336513132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:24 Heat of formation + Delta-G solvation = -45.011633 kcal Electronic energy + Delta-G solvation = -22501.977555 eV Core-core repulsion = 19317.325795 eV Total energy + Delta-G solvation = -3184.651760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30544 -39.50812 -38.57987 -36.06454 -35.50147 -32.24202 -31.68292 -31.07779 -29.42920 -27.99217 -27.46782 -25.66915 -23.60097 -22.88157 -21.56419 -20.80404 -19.97885 -19.34970 -18.22809 -17.64076 -17.13486 -16.30948 -16.03663 -15.77102 -15.68209 -15.10125 -14.82989 -14.45631 -14.36516 -14.10273 -14.04519 -13.70634 -13.65889 -13.36019 -13.06522 -12.97000 -12.82914 -12.64466 -12.57568 -12.34120 -12.28026 -11.74065 -11.72394 -11.62482 -11.50964 -11.33731 -11.29401 -11.15241 -10.67185 -9.63356 -9.49429 -9.30041 -8.69911 -6.46930 0.53227 1.13366 1.39279 1.42412 1.55138 1.94412 2.15675 2.19683 2.73818 3.61017 3.64112 3.67010 3.89985 4.00950 4.21608 4.32125 4.37319 4.39659 4.43608 4.50874 4.55993 4.67488 4.70238 4.75897 4.87298 4.96916 4.98674 5.00661 5.04887 5.08291 5.16106 5.20158 5.26473 5.28356 5.33240 5.36503 5.57610 5.61351 5.71773 5.78985 6.00389 6.02727 6.22717 6.48934 6.58923 6.81665 6.91057 7.31449 8.24911 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.042284 B = 0.003183 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.032285 B = 8794.255819 C = 8893.004684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.088 0.912 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.127 3.873 7 H 0.071 0.929 8 N -0.604 5.604 9 C 0.074 3.926 10 C 0.571 3.429 11 O -0.605 6.605 12 C -0.275 4.275 13 C -0.060 4.060 14 C -0.190 4.190 15 C 0.099 3.901 16 C -0.480 4.480 17 H 0.088 0.912 18 C 0.031 3.969 19 N -0.817 5.817 20 Si 0.989 3.011 21 H -0.254 1.254 22 H -0.267 1.267 23 H -0.264 1.264 24 C -0.238 4.238 25 C -0.045 4.045 26 C -0.126 4.126 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.292 0.708 40 H 0.116 0.884 41 H 0.134 0.866 42 H 0.075 0.925 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 12.460 -6.643 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.107 0.893 4 C -0.149 4.149 5 C -0.170 4.170 6 C 0.024 3.976 7 H 0.089 0.911 8 N -0.335 5.335 9 C -0.067 4.067 10 C 0.364 3.636 11 O -0.488 6.488 12 C -0.280 4.280 13 C -0.079 4.079 14 C -0.210 4.210 15 C 0.096 3.904 16 C -0.508 4.508 17 H 0.106 0.894 18 C -0.185 4.185 19 N -0.442 5.442 20 Si 0.809 3.191 21 H -0.177 1.177 22 H -0.192 1.192 23 H -0.189 1.189 24 C -0.257 4.257 25 C -0.064 4.064 26 C -0.164 4.164 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.093 0.907 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.751 11.906 -6.862 16.291 hybrid contribution 0.686 -0.938 0.382 1.224 sum -8.065 10.967 -6.480 15.077 Atomic orbital electron populations 1.21881 0.94374 1.01596 1.02279 1.21687 0.96195 0.99618 0.93204 0.89339 1.22389 0.95870 0.99014 0.97580 1.22869 0.99681 1.00430 0.94034 1.22048 0.86230 0.98840 0.90450 0.91087 1.47783 1.24100 1.14010 1.47591 1.22129 0.91621 0.90007 1.02967 1.18672 0.85917 0.81160 0.77867 1.90615 1.45530 1.47267 1.65420 1.19128 1.00591 0.97423 1.10817 1.20473 0.94934 0.94881 0.97643 1.20950 0.96515 0.99952 1.03566 1.18130 0.91751 0.90759 0.89736 1.20076 1.02259 1.21347 1.07103 0.89428 1.26937 1.01992 0.93517 0.96052 1.69782 1.34562 1.23617 1.16208 0.85045 0.76426 0.78681 0.78932 1.17683 1.19186 1.18859 1.20989 1.00321 0.96947 1.07486 1.20857 0.94268 0.97139 0.94121 1.22564 0.99062 0.96205 0.98614 0.92473 0.93458 0.91361 0.91454 0.89435 0.89730 0.92402 0.91223 0.91559 0.88585 0.89492 0.87724 0.89754 0.86616 0.84802 0.90669 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.84 71.98 0.64 -1.43 16 2 C -0.09 -1.40 3.50 -10.07 -0.04 -1.43 16 3 H 0.09 1.15 8.14 -2.38 -0.02 1.14 16 4 C -0.11 -1.78 6.37 31.69 0.20 -1.58 16 5 C -0.13 -2.86 6.40 31.91 0.20 -2.65 16 6 C 0.13 3.56 3.26 46.07 0.15 3.71 16 7 H 0.07 2.43 7.00 -2.39 -0.02 2.41 16 8 N -0.60 -19.97 2.86 -820.22 -2.35 -22.31 16 9 C 0.07 1.94 7.73 127.77 0.99 2.93 16 10 C 0.57 24.89 7.30 86.73 0.63 25.52 16 11 O -0.60 -30.41 16.32 -4.00 -0.07 -30.47 16 12 C -0.28 -12.77 5.16 -19.94 -0.10 -12.88 16 13 C -0.06 -3.07 9.58 22.25 0.21 -2.86 16 14 C -0.19 -10.23 8.60 22.47 0.19 -10.04 16 15 C 0.10 5.19 5.55 -21.28 -0.12 5.07 16 16 C -0.48 -24.51 9.05 23.46 0.21 -24.30 16 17 H 0.09 4.23 7.87 -2.91 -0.02 4.20 16 18 C 0.03 1.51 5.25 85.35 0.45 1.96 16 19 N -0.82 -41.44 10.84 21.87 0.24 -41.21 16 20 Si 0.99 36.30 29.57 68.60 2.03 38.33 16 21 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 22 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 23 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 24 C -0.24 -10.94 9.73 22.47 0.22 -10.72 16 25 C -0.05 -1.90 7.55 22.25 0.17 -1.73 16 26 C -0.13 -2.73 6.09 31.32 0.19 -2.54 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 1.11 7.84 -2.39 -0.02 1.09 16 31 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 1.64 6.10 -2.39 -0.01 1.63 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.58 6.78 -2.39 -0.02 1.57 16 35 H 0.07 2.04 6.02 -2.39 -0.01 2.02 16 36 H 0.10 1.88 6.08 -2.39 -0.01 1.86 16 37 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.10 5.88 6.22 -2.91 -0.02 5.86 16 39 H 0.29 13.31 8.29 -92.71 -0.77 12.54 16 40 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 41 H 0.13 4.55 5.54 -2.91 -0.02 4.53 16 42 H 0.07 1.54 7.11 -2.39 -0.02 1.52 16 43 H 0.06 1.37 7.67 -2.39 -0.02 1.35 16 Total: -1.00 -63.79 338.36 5.06 -58.74 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 1.00 Total: 29.89 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 4.20 Total: -32.97 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -2.11 Total: -63.52 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.07 Total: -30.47 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -63.79 5.06 -58.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336513132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.725 kcal (2) G-P(sol) polarization free energy of solvation -63.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds