Wall clock time and date at job start Tue Mar 31 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46822 * 2 1 4 4 N 1.46495 * 109.46965 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00192 * 263.43183 * 4 3 2 6 6 H 1.08000 * 120.00416 * 188.11794 * 5 4 3 7 7 C 1.38955 * 119.99739 * 8.11410 * 5 4 3 8 8 N 1.31408 * 120.00218 * 25.95867 * 7 5 4 9 9 Si 1.86796 * 120.00048 * 205.95413 * 7 5 4 10 10 H 1.48508 * 109.47023 * 84.98935 * 9 7 5 11 11 H 1.48501 * 109.47300 * 204.98882 * 9 7 5 12 12 H 1.48500 * 109.47384 * 324.99132 * 9 7 5 13 13 C 1.34780 * 119.99972 * 83.43209 * 4 3 2 14 14 O 1.21300 * 119.99700 * 179.97438 * 13 4 3 15 15 C 1.50690 * 119.99956 * 359.97438 * 13 4 3 16 16 C 1.53008 * 109.47053 * 179.97438 * 15 13 4 17 17 H 1.09000 * 115.54611 * 29.33250 * 16 15 13 18 18 C 1.53005 * 117.49714 * 243.62222 * 16 15 13 19 19 C 1.53001 * 117.49808 * 175.00083 * 16 15 13 20 20 H 1.09000 * 117.49660 * 214.98194 * 19 16 15 21 21 C 1.50702 * 117.49785 * 359.97438 * 19 16 15 22 22 C 1.38233 * 120.00400 * 59.72828 * 21 19 16 23 23 C 1.38230 * 120.00049 * 179.80875 * 22 21 19 24 24 C 1.38237 * 120.00282 * 0.39663 * 23 22 21 25 25 C 1.38238 * 119.99418 * 359.85592 * 24 23 22 26 26 C 1.38231 * 120.00334 * 359.95522 * 25 24 23 27 27 H 1.08995 * 109.47245 * 59.99777 * 1 2 3 28 28 H 1.09002 * 109.46601 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47263 * 299.99549 * 1 2 3 30 30 H 1.08999 * 109.47263 * 240.00450 * 2 1 3 31 31 H 1.08996 * 109.47501 * 119.99737 * 2 1 3 32 32 H 1.08999 * 109.46834 * 60.00188 * 3 2 1 33 33 H 1.08996 * 109.46868 * 300.00124 * 3 2 1 34 34 H 0.96999 * 120.00456 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47257 * 299.99999 * 15 13 4 36 36 H 1.09006 * 109.47280 * 60.00168 * 15 13 4 37 37 H 1.08997 * 117.49930 * 0.02562 * 18 16 15 38 38 H 1.08996 * 117.49481 * 145.02309 * 18 16 15 39 39 H 1.08006 * 119.99429 * 359.97438 * 22 21 19 40 40 H 1.07999 * 119.99712 * 180.23062 * 23 22 21 41 41 H 1.07994 * 119.99959 * 179.83054 * 24 23 22 42 42 H 1.08005 * 119.99325 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99851 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1909 1.5783 1.1786 6 1 5.2628 1.7100 1.1678 7 6 3.5071 1.5463 2.3878 8 7 2.3628 0.9067 2.4788 9 14 4.2145 2.4123 3.8841 10 1 3.8188 3.8435 3.8608 11 1 3.6915 1.7741 5.1188 12 1 5.6957 2.3080 3.8622 13 6 4.1783 1.3093 -1.1605 14 8 5.3913 1.3098 -1.1610 15 6 3.4243 1.1596 -2.4566 16 6 4.4181 1.0276 -3.6124 17 1 5.3757 0.5725 -3.3593 18 6 4.4174 2.1294 -4.6740 19 6 3.8491 0.7479 -5.0049 20 1 4.4325 0.1092 -5.6680 21 6 2.3527 0.6231 -5.1328 22 6 1.5377 1.6805 -4.7747 23 6 0.1653 1.5673 -4.8958 24 6 -0.3925 0.3937 -5.3674 25 6 0.4223 -0.6656 -5.7206 26 6 1.7949 -0.5511 -5.6032 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 1.8855 0.8841 3.3230 35 1 2.7980 0.2686 -2.4118 36 1 2.7972 2.0369 -2.6155 37 1 3.7094 2.9485 -4.5488 38 1 5.3748 2.3995 -5.1195 39 1 1.9734 2.5961 -4.4027 40 1 -0.4712 2.3949 -4.6194 41 1 -1.4648 0.3044 -5.4594 42 1 -0.0136 -1.5827 -6.0887 43 1 2.4314 -1.3789 -5.8788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340869788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:23 Heat of formation + Delta-G solvation = 16.538939 kcal Electronic energy + Delta-G solvation = -23167.853951 eV Core-core repulsion = 19985.871224 eV Total energy + Delta-G solvation = -3181.982727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.80780 -38.49657 -36.75621 -35.15215 -32.38209 -31.25030 -30.93116 -30.48536 -28.72378 -25.67908 -24.24255 -23.68510 -22.50420 -21.04893 -20.66412 -19.90021 -18.59546 -16.84831 -16.64206 -16.22088 -15.47062 -14.89647 -14.56492 -14.39116 -14.08230 -13.79753 -13.63320 -13.48308 -13.29343 -12.90591 -12.62411 -12.23883 -12.01885 -11.86667 -11.57860 -11.34416 -11.27477 -10.96198 -10.89261 -10.82896 -10.59466 -10.39222 -10.34804 -10.19589 -10.03336 -9.76796 -9.47438 -8.84182 -8.81188 -8.38108 -8.26810 -7.68943 -6.31579 -3.71729 1.41677 1.48155 3.18504 3.28489 3.33160 3.71473 3.95575 4.15845 4.28495 4.69962 4.82554 4.93272 5.04845 5.09888 5.17465 5.20405 5.30441 5.34374 5.54463 5.67729 5.76064 5.89583 5.94003 6.02457 6.04063 6.09026 6.11875 6.15389 6.22264 6.25691 6.39801 6.48690 6.55257 6.58323 6.70146 6.73176 6.76470 6.86941 6.91275 7.08178 7.34434 7.52591 7.77307 8.15523 8.57005 9.24404 9.51340 10.07516 10.68955 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.004983 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.633748 B = 5617.995363 C = 6615.205160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.128 3.872 4 N -0.443 5.443 5 C -0.308 4.308 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.915 3.085 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.444 3.556 14 O -0.594 6.594 15 C -0.098 4.098 16 C -0.105 4.105 17 H 0.121 0.879 18 C -0.172 4.172 19 C -0.130 4.130 20 H 0.110 0.890 21 C -0.038 4.038 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.119 4.119 26 C -0.118 4.118 27 H 0.036 0.964 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 -0.573 -13.220 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C 0.004 3.996 4 N -0.161 5.161 5 C -0.435 4.435 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.503 5.503 9 Si 0.742 3.258 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.196 1.196 13 C 0.233 3.767 14 O -0.480 6.480 15 C -0.138 4.138 16 C -0.123 4.123 17 H 0.139 0.861 18 C -0.208 4.208 19 C -0.148 4.148 20 H 0.128 0.872 21 C -0.038 4.038 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.148 4.148 25 C -0.137 4.137 26 C -0.136 4.136 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.635 -0.605 -13.036 14.640 hybrid contribution 0.001 0.308 0.799 0.856 sum -6.634 -0.297 -12.237 13.923 Atomic orbital electron populations 1.21592 0.97345 0.99999 1.00484 1.21879 0.93943 0.98333 1.02106 1.21476 0.80745 0.96804 1.00559 1.43804 1.05244 1.61502 1.05578 1.19706 0.94216 1.47328 0.82273 0.87922 1.25146 0.96506 0.96808 0.98727 1.70116 1.16824 1.36881 1.26488 0.86118 0.79538 0.79744 0.80396 1.20481 1.21212 1.19574 1.19892 0.87950 0.83849 0.85031 1.90482 1.14090 1.56539 1.86903 1.21148 0.97344 1.02554 0.92797 1.22233 1.00799 1.01619 0.87646 0.86149 1.23154 1.02216 0.91595 1.03881 1.21242 0.91743 1.00782 1.01033 0.87230 1.19157 0.93498 0.93760 0.97431 1.21121 0.93492 0.98917 1.00122 1.21108 0.94930 0.97871 0.99444 1.21084 0.99532 0.93812 1.00379 1.21077 0.93629 0.98625 1.00372 1.20939 0.94962 0.97141 1.00522 0.94466 0.94151 0.92775 0.95105 0.88266 0.88161 0.95220 0.92381 0.89877 0.90697 0.88743 0.88654 0.85940 0.86243 0.86460 0.86372 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.12 -2.59 5.67 -26.73 -0.15 -2.74 16 3 C 0.13 2.85 4.35 -4.04 -0.02 2.83 16 4 N -0.44 -11.30 2.64 -114.81 -0.30 -11.61 16 5 C -0.31 -8.53 9.42 -14.93 -0.14 -8.67 16 6 H 0.10 3.04 7.31 -52.49 -0.38 2.65 16 7 C 0.03 0.80 4.88 -17.47 -0.09 0.72 16 8 N -0.86 -21.87 8.70 55.50 0.48 -21.39 16 9 Si 0.92 20.49 29.62 -169.99 -5.04 15.46 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.44 10.92 7.57 -10.99 -0.08 10.83 16 14 O -0.59 -16.54 15.15 5.54 0.08 -16.46 16 15 C -0.10 -1.87 3.24 -27.88 -0.09 -1.96 16 16 C -0.10 -1.77 5.41 -90.61 -0.49 -2.26 16 17 H 0.12 2.27 7.30 -51.93 -0.38 1.89 16 18 C -0.17 -2.40 9.51 -26.73 -0.25 -2.65 16 19 C -0.13 -1.77 6.04 -91.77 -0.55 -2.32 16 20 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 21 C -0.04 -0.52 4.97 -104.62 -0.52 -1.04 16 22 C -0.12 -1.56 7.86 -39.59 -0.31 -1.87 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 24 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 25 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 26 C -0.12 -1.46 9.74 -39.58 -0.39 -1.84 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.03 0.63 6.44 -51.93 -0.33 0.29 16 31 H 0.10 2.39 6.40 -51.93 -0.33 2.06 16 32 H 0.10 2.41 5.83 -51.93 -0.30 2.11 16 33 H 0.03 0.59 6.72 -51.93 -0.35 0.24 16 34 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.08 1.58 6.27 -51.93 -0.33 1.26 16 36 H 0.07 1.32 5.48 -51.93 -0.28 1.04 16 37 H 0.09 1.26 6.08 -51.93 -0.32 0.94 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.12 1.56 5.19 -52.48 -0.27 1.29 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -29.56 340.43 -9.77 -39.33 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.22 Total: 7.89 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -3.91 Total: -18.35 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.18 Total: -33.00 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.08 Total: -16.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.04 Total: 15.46 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.56 -9.77 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340869788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.864 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds