Wall clock time and date at job start Tue Mar 31 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46822 * 2 1 4 4 N 1.46495 * 109.46965 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00192 * 263.43183 * 4 3 2 6 6 H 1.08000 * 120.00416 * 188.11794 * 5 4 3 7 7 C 1.38955 * 119.99739 * 8.11410 * 5 4 3 8 8 N 1.31408 * 120.00218 * 25.95867 * 7 5 4 9 9 Si 1.86796 * 120.00048 * 205.95413 * 7 5 4 10 10 H 1.48508 * 109.47023 * 84.98935 * 9 7 5 11 11 H 1.48501 * 109.47300 * 204.98882 * 9 7 5 12 12 H 1.48500 * 109.47384 * 324.99132 * 9 7 5 13 13 C 1.34780 * 119.99972 * 83.43209 * 4 3 2 14 14 O 1.21300 * 119.99700 * 179.97438 * 13 4 3 15 15 C 1.50690 * 119.99956 * 359.97438 * 13 4 3 16 16 C 1.53008 * 109.47053 * 179.97438 * 15 13 4 17 17 H 1.09000 * 115.54611 * 29.33250 * 16 15 13 18 18 C 1.53005 * 117.49714 * 243.62222 * 16 15 13 19 19 C 1.53001 * 117.49808 * 175.00083 * 16 15 13 20 20 H 1.09000 * 117.49660 * 214.98194 * 19 16 15 21 21 C 1.50702 * 117.49785 * 359.97438 * 19 16 15 22 22 C 1.38233 * 120.00400 * 59.72828 * 21 19 16 23 23 C 1.38230 * 120.00049 * 179.80875 * 22 21 19 24 24 C 1.38237 * 120.00282 * 0.39663 * 23 22 21 25 25 C 1.38238 * 119.99418 * 359.85592 * 24 23 22 26 26 C 1.38231 * 120.00334 * 359.95522 * 25 24 23 27 27 H 1.08995 * 109.47245 * 59.99777 * 1 2 3 28 28 H 1.09002 * 109.46601 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47263 * 299.99549 * 1 2 3 30 30 H 1.08999 * 109.47263 * 240.00450 * 2 1 3 31 31 H 1.08996 * 109.47501 * 119.99737 * 2 1 3 32 32 H 1.08999 * 109.46834 * 60.00188 * 3 2 1 33 33 H 1.08996 * 109.46868 * 300.00124 * 3 2 1 34 34 H 0.96999 * 120.00456 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47257 * 299.99999 * 15 13 4 36 36 H 1.09006 * 109.47280 * 60.00168 * 15 13 4 37 37 H 1.08997 * 117.49930 * 0.02562 * 18 16 15 38 38 H 1.08996 * 117.49481 * 145.02309 * 18 16 15 39 39 H 1.08006 * 119.99429 * 359.97438 * 22 21 19 40 40 H 1.07999 * 119.99712 * 180.23062 * 23 22 21 41 41 H 1.07994 * 119.99959 * 179.83054 * 24 23 22 42 42 H 1.08005 * 119.99325 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99851 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1909 1.5783 1.1786 6 1 5.2628 1.7100 1.1678 7 6 3.5071 1.5463 2.3878 8 7 2.3628 0.9067 2.4788 9 14 4.2145 2.4123 3.8841 10 1 3.8188 3.8435 3.8608 11 1 3.6915 1.7741 5.1188 12 1 5.6957 2.3080 3.8622 13 6 4.1783 1.3093 -1.1605 14 8 5.3913 1.3098 -1.1610 15 6 3.4243 1.1596 -2.4566 16 6 4.4181 1.0276 -3.6124 17 1 5.3757 0.5725 -3.3593 18 6 4.4174 2.1294 -4.6740 19 6 3.8491 0.7479 -5.0049 20 1 4.4325 0.1092 -5.6680 21 6 2.3527 0.6231 -5.1328 22 6 1.5377 1.6805 -4.7747 23 6 0.1653 1.5673 -4.8958 24 6 -0.3925 0.3937 -5.3674 25 6 0.4223 -0.6656 -5.7206 26 6 1.7949 -0.5511 -5.6032 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 1.8855 0.8841 3.3230 35 1 2.7980 0.2686 -2.4118 36 1 2.7972 2.0369 -2.6155 37 1 3.7094 2.9485 -4.5488 38 1 5.3748 2.3995 -5.1195 39 1 1.9734 2.5961 -4.4027 40 1 -0.4712 2.3949 -4.6194 41 1 -1.4648 0.3044 -5.4594 42 1 -0.0136 -1.5827 -6.0887 43 1 2.4314 -1.3789 -5.8788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340869788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:22 Heat of formation + Delta-G solvation = 2.934862 kcal Electronic energy + Delta-G solvation = -23168.443868 eV Core-core repulsion = 19985.871224 eV Total energy + Delta-G solvation = -3182.572644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02611 -40.10270 -37.96597 -37.03430 -34.22310 -33.11820 -31.86351 -31.46525 -30.23918 -27.44738 -26.08569 -24.67491 -23.42224 -22.52988 -22.17236 -21.10220 -20.16358 -18.83301 -17.99733 -17.64604 -16.80432 -16.26650 -16.02611 -15.85888 -15.70289 -15.31452 -15.16132 -14.67866 -14.40330 -14.16698 -13.90687 -13.73297 -13.69770 -13.29798 -13.05142 -12.93508 -12.68792 -12.59096 -12.37848 -12.13258 -12.07121 -11.95018 -11.80906 -11.69886 -11.39710 -11.35796 -10.86442 -10.72486 -10.26037 -9.71780 -9.66043 -9.35078 -8.31392 -5.80329 0.49499 0.59362 1.36517 1.42949 1.52945 2.04915 2.29497 2.70756 3.06893 3.11290 3.23123 3.65087 3.85059 3.96368 4.06361 4.19274 4.22400 4.27507 4.36250 4.38523 4.51457 4.57946 4.64948 4.69436 4.72429 4.80267 4.86479 4.91915 4.99167 5.09792 5.10198 5.23912 5.24342 5.25609 5.36146 5.37628 5.49079 5.61952 5.68061 5.71613 5.81714 5.93518 6.11655 6.21063 6.57579 7.22614 7.54873 8.11946 8.66438 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.004983 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.633748 B = 5617.995363 C = 6615.205160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.116 4.116 3 C 0.132 3.868 4 N -0.454 5.454 5 C -0.354 4.354 6 H 0.068 0.932 7 C 0.008 3.992 8 N -0.862 5.862 9 Si 0.976 3.024 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.282 1.282 13 C 0.427 3.573 14 O -0.639 6.639 15 C -0.074 4.074 16 C -0.139 4.139 17 H 0.092 0.908 18 C -0.162 4.162 19 C -0.103 4.103 20 H 0.126 0.874 21 C -0.060 4.060 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.127 4.127 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.273 0.727 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 -0.525 -14.206 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.154 4.154 3 C 0.009 3.991 4 N -0.171 5.171 5 C -0.482 4.482 6 H 0.086 0.914 7 C -0.195 4.195 8 N -0.500 5.500 9 Si 0.801 3.199 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.207 1.207 13 C 0.218 3.782 14 O -0.528 6.528 15 C -0.113 4.113 16 C -0.157 4.157 17 H 0.110 0.890 18 C -0.199 4.199 19 C -0.121 4.121 20 H 0.143 0.857 21 C -0.060 4.060 22 C -0.150 4.150 23 C -0.142 4.142 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.145 4.145 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.226 -0.567 -14.022 16.795 hybrid contribution 0.747 0.247 1.121 1.370 sum -8.479 -0.320 -12.901 15.441 Atomic orbital electron populations 1.21494 0.94168 1.01369 1.01332 1.21717 0.96594 0.96778 1.00316 1.21525 0.78955 0.97855 1.00779 1.44052 1.06556 1.61203 1.05329 1.19534 0.93351 1.51048 0.84246 0.91350 1.25784 0.96964 0.96320 1.00462 1.70193 1.16884 1.35509 1.27405 0.85225 0.78199 0.78990 0.77525 1.19535 1.19714 1.20688 1.20900 0.87908 0.82829 0.86577 1.90435 1.16246 1.58357 1.87803 1.20930 0.97111 1.02980 0.90316 1.22015 0.99750 1.05183 0.88773 0.88989 1.23266 1.03127 0.91855 1.01639 1.21269 0.92495 1.00387 0.97916 0.85660 1.19235 0.93091 0.94685 0.98974 1.21233 0.94273 0.98889 1.00652 1.21383 0.94651 0.98858 0.99281 1.21444 1.00904 0.93321 0.99198 1.21413 0.93258 0.99671 0.99772 1.21186 0.95905 0.97100 1.00343 0.92234 0.92553 0.93239 0.95071 0.91841 0.89979 0.92669 0.91674 0.89875 0.89171 0.87914 0.87451 0.86129 0.84546 0.84058 0.84066 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.91 71.98 0.71 -3.33 16 2 C -0.12 -4.76 5.67 30.60 0.17 -4.58 16 3 C 0.13 5.85 4.35 86.38 0.38 6.23 16 4 N -0.45 -23.92 2.64 -635.54 -1.68 -25.60 16 5 C -0.35 -20.50 9.42 84.04 0.79 -19.71 16 6 H 0.07 4.33 7.31 -2.91 -0.02 4.31 16 7 C 0.01 0.43 4.88 84.93 0.41 0.85 16 8 N -0.86 -43.68 8.70 21.66 0.19 -43.50 16 9 Si 0.98 42.39 29.62 68.60 2.03 44.42 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.43 21.89 7.57 87.65 0.66 22.56 16 14 O -0.64 -37.78 15.15 -3.09 -0.05 -37.83 16 15 C -0.07 -2.83 3.24 29.85 0.10 -2.73 16 16 C -0.14 -4.76 5.41 -10.79 -0.06 -4.81 16 17 H 0.09 3.68 7.30 -2.39 -0.02 3.66 16 18 C -0.16 -4.40 9.51 30.60 0.29 -4.11 16 19 C -0.10 -2.68 6.04 -11.54 -0.07 -2.75 16 20 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 21 C -0.06 -1.50 4.97 -19.87 -0.10 -1.60 16 22 C -0.13 -3.21 7.86 22.27 0.18 -3.03 16 23 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 24 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 25 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 26 C -0.13 -2.85 9.74 22.27 0.22 -2.63 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.03 1.25 6.44 -2.39 -0.02 1.24 16 31 H 0.06 3.08 6.40 -2.39 -0.02 3.07 16 32 H 0.08 3.94 5.83 -2.39 -0.01 3.93 16 33 H 0.06 2.14 6.72 -2.39 -0.02 2.12 16 34 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 35 H 0.08 3.15 6.27 -2.39 -0.01 3.13 16 36 H 0.09 3.13 5.48 -2.38 -0.01 3.11 16 37 H 0.10 2.60 6.08 -2.39 -0.01 2.59 16 38 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.12 2.87 5.19 -2.91 -0.02 2.85 16 40 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -66.71 340.43 5.86 -60.86 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 1.00 Total: 28.11 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 4.36 Total: -26.47 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.49 Total: -69.09 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.05 Total: -37.83 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -66.71 5.86 -60.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340869788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.793 kcal (2) G-P(sol) polarization free energy of solvation -66.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds