Wall clock time and date at job start Tue Mar 31 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47132 * 2 1 4 4 N 1.46502 * 109.47038 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99887 * 263.43833 * 4 3 2 6 6 H 1.07998 * 120.00056 * 188.07453 * 5 4 3 7 7 C 1.38954 * 119.99783 * 8.07072 * 5 4 3 8 8 N 1.31404 * 120.00306 * 26.03082 * 7 5 4 9 9 Si 1.86804 * 119.99866 * 206.03497 * 7 5 4 10 10 H 1.48492 * 109.47151 * 84.98660 * 9 7 5 11 11 H 1.48498 * 109.47150 * 204.98887 * 9 7 5 12 12 H 1.48499 * 109.46813 * 324.98584 * 9 7 5 13 13 C 1.34773 * 120.00282 * 83.43962 * 4 3 2 14 14 O 1.21296 * 120.00122 * 179.97438 * 13 4 3 15 15 C 1.50704 * 119.99769 * 0.02562 * 13 4 3 16 16 C 1.50699 * 109.46752 * 179.97438 * 15 13 4 17 17 C 1.38254 * 120.03155 * 89.99895 * 16 15 13 18 18 C 1.38111 * 119.93365 * 179.97438 * 17 16 15 19 19 C 1.38497 * 120.21415 * 0.02562 * 18 17 16 20 20 C 1.38212 * 119.85281 * 359.97438 * 19 18 17 21 21 C 1.38108 * 120.03467 * 269.72276 * 16 15 13 22 22 C 1.51374 * 109.76165 * 180.02562 * 20 19 18 23 23 C 1.54342 * 105.16715 * 342.81054 * 22 20 19 24 24 C 1.51365 * 130.38945 * 180.02562 * 19 18 17 25 25 H 1.09007 * 109.47210 * 300.00281 * 1 2 3 26 26 H 1.08997 * 109.47088 * 60.00008 * 1 2 3 27 27 H 1.08999 * 109.47227 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47291 * 240.00109 * 2 1 3 29 29 H 1.08997 * 109.47088 * 119.99992 * 2 1 3 30 30 H 1.08993 * 109.47327 * 59.99989 * 3 2 1 31 31 H 1.09006 * 109.46902 * 300.00117 * 3 2 1 32 32 H 0.96997 * 120.00498 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47257 * 59.99845 * 15 13 4 34 34 H 1.09000 * 109.47207 * 299.99398 * 15 13 4 35 35 H 1.07996 * 120.03470 * 0.02562 * 17 16 15 36 36 H 1.07993 * 119.88903 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.89215 * 0.02562 * 21 16 15 38 38 H 1.08997 * 110.30105 * 223.89291 * 22 20 19 39 39 H 1.08996 * 110.38553 * 101.77569 * 22 20 19 40 40 H 1.08997 * 110.82511 * 268.12208 * 23 22 20 41 41 H 1.09001 * 110.99469 * 144.64708 * 23 22 20 42 42 H 1.09004 * 110.30390 * 316.08116 * 24 19 18 43 43 H 1.09001 * 110.30430 * 78.23617 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5780 1.1787 6 1 5.2629 1.7090 1.1679 7 6 3.5070 1.5468 2.3878 8 7 2.3629 0.9069 2.4792 9 14 4.2138 2.4147 3.8834 10 1 3.8174 3.8455 3.8587 11 1 3.6909 1.7774 5.1186 12 1 5.6950 2.3110 3.8617 13 6 4.1784 1.3093 -1.1604 14 8 5.3914 1.3098 -1.1609 15 6 3.4244 1.1610 -2.4568 16 6 4.4033 1.0308 -3.5951 17 6 4.8528 -0.2181 -3.9817 18 6 5.7495 -0.3351 -5.0256 19 6 6.2008 0.7951 -5.6867 20 6 5.7515 2.0436 -5.3002 21 6 4.8478 2.1585 -4.2569 22 6 6.3857 3.1077 -6.1702 23 6 7.5955 2.4175 -6.8350 24 6 7.1675 0.9345 -6.8431 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 1.8856 0.8848 3.3233 33 1 2.7980 2.0388 -2.6153 34 1 2.7974 0.2704 -2.4126 35 1 4.5024 -1.1014 -3.4686 36 1 6.1004 -1.3111 -5.3267 37 1 4.4931 3.1336 -3.9570 38 1 6.7178 3.9472 -5.5594 39 1 5.6806 3.4480 -6.9286 40 1 8.4973 2.5575 -6.2389 41 1 7.7441 2.7833 -7.8510 42 1 8.0335 0.2901 -6.6920 43 1 6.6717 0.6890 -7.7823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346511768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:21 Heat of formation + Delta-G solvation = -30.497371 kcal Electronic energy + Delta-G solvation = -22687.798518 eV Core-core repulsion = 19503.776144 eV Total energy + Delta-G solvation = -3184.022374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18747 -40.26012 -37.39411 -36.60899 -34.25465 -33.13178 -32.82025 -31.37396 -28.84013 -27.90310 -27.02194 -25.82010 -23.45433 -22.41624 -21.66596 -21.62310 -20.22202 -18.83248 -17.96319 -17.05477 -16.69897 -16.47222 -16.10616 -15.99254 -15.67580 -15.30359 -15.26473 -14.48113 -14.13339 -14.10575 -13.73518 -13.71324 -13.63975 -13.34415 -13.16013 -12.82785 -12.68774 -12.54589 -12.44086 -12.19896 -12.09510 -12.04738 -12.00587 -11.85948 -11.68893 -11.55607 -11.31917 -10.74535 -10.32782 -9.66608 -9.62326 -9.22397 -8.32059 -5.80962 0.45612 0.52403 1.35561 1.42093 1.51934 2.04430 2.28858 2.76448 3.06071 3.24058 3.51996 3.70821 3.91346 4.12301 4.14915 4.17924 4.21319 4.34493 4.35669 4.51251 4.57994 4.63604 4.66131 4.74132 4.77079 4.83867 4.89706 4.96484 4.97072 5.09333 5.11209 5.24756 5.26618 5.34879 5.37670 5.39002 5.48623 5.54122 5.63194 5.73191 5.76046 5.95141 6.09061 6.18701 6.57192 7.22269 7.53747 8.11439 8.65416 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.021878 B = 0.004066 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.530475 B = 6884.871260 C = 7645.506088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.119 4.119 3 C 0.127 3.873 4 N -0.454 5.454 5 C -0.353 4.353 6 H 0.066 0.934 7 C 0.009 3.991 8 N -0.861 5.861 9 Si 0.975 3.025 10 H -0.270 1.270 11 H -0.271 1.271 12 H -0.283 1.283 13 C 0.433 3.567 14 O -0.635 6.635 15 C -0.080 4.080 16 C -0.066 4.066 17 C -0.127 4.127 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.081 4.081 23 C -0.115 4.115 24 C -0.076 4.076 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.273 0.727 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 0.893 -15.969 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C 0.004 3.996 4 N -0.172 5.172 5 C -0.481 4.481 6 H 0.084 0.916 7 C -0.194 4.194 8 N -0.499 5.499 9 Si 0.799 3.201 10 H -0.195 1.195 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.223 3.777 14 O -0.523 6.523 15 C -0.120 4.120 16 C -0.067 4.067 17 C -0.145 4.145 18 C -0.132 4.132 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.134 4.134 22 C -0.118 4.118 23 C -0.153 4.153 24 C -0.113 4.113 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.435 0.854 -15.787 15.816 hybrid contribution 0.244 0.168 1.518 1.546 sum -0.191 1.023 -14.269 14.307 Atomic orbital electron populations 1.21520 0.94152 1.01467 1.01455 1.21754 0.96615 0.96712 1.00641 1.21604 0.78834 0.98060 1.01120 1.44053 1.06625 1.61341 1.05174 1.19498 0.93261 1.51063 0.84236 0.91556 1.25755 0.96966 0.96331 1.00372 1.70185 1.16838 1.35457 1.27403 0.85246 0.78149 0.79039 0.77636 1.19536 1.19630 1.20826 1.20693 0.87801 0.83098 0.86069 1.90482 1.16219 1.57910 1.87706 1.20551 0.96996 1.04803 0.89663 1.19402 0.98160 0.93961 0.95156 1.21037 0.98774 0.96900 0.97775 1.20791 0.97528 0.98937 0.95899 1.21000 0.99231 0.93033 0.98635 1.20928 0.96948 0.97121 0.96322 1.20583 0.98621 0.97867 0.96302 1.21117 0.97435 0.95871 0.97345 1.22327 0.96874 0.93907 1.02155 1.21095 0.96947 0.97902 0.95326 0.93403 0.91939 0.92449 0.94479 0.91871 0.89976 0.92156 0.91658 0.87880 0.87898 0.86191 0.84344 0.86719 0.91080 0.88682 0.91438 0.87818 0.90117 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.91 71.98 0.71 -3.26 16 2 C -0.12 -4.74 5.67 30.59 0.17 -4.57 16 3 C 0.13 5.53 4.35 86.38 0.38 5.90 16 4 N -0.45 -23.80 2.64 -635.52 -1.68 -25.47 16 5 C -0.35 -20.45 9.42 84.04 0.79 -19.65 16 6 H 0.07 4.23 7.31 -2.91 -0.02 4.21 16 7 C 0.01 0.49 4.88 84.93 0.41 0.91 16 8 N -0.86 -43.45 8.70 21.66 0.19 -43.26 16 9 Si 0.97 42.52 29.63 68.60 2.03 44.55 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C 0.43 22.19 7.57 87.66 0.66 22.86 16 14 O -0.63 -38.16 15.63 -3.08 -0.05 -38.21 16 15 C -0.08 -3.11 4.44 29.10 0.13 -2.98 16 16 C -0.07 -2.51 4.37 -19.89 -0.09 -2.59 16 17 C -0.13 -4.46 9.70 22.24 0.22 -4.25 16 18 C -0.11 -3.44 10.04 22.30 0.22 -3.22 16 19 C -0.12 -3.37 6.14 -19.60 -0.12 -3.49 16 20 C -0.11 -3.43 6.14 -19.59 -0.12 -3.55 16 21 C -0.12 -4.08 9.69 22.30 0.22 -3.86 16 22 C -0.08 -1.76 6.77 30.52 0.21 -1.56 16 23 C -0.12 -2.00 7.08 31.51 0.22 -1.78 16 24 C -0.08 -1.47 6.77 30.52 0.21 -1.26 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.41 6.44 -2.39 -0.02 1.39 16 29 H 0.06 3.01 6.40 -2.39 -0.02 2.99 16 30 H 0.08 3.89 5.83 -2.39 -0.01 3.88 16 31 H 0.06 2.24 6.72 -2.38 -0.02 2.23 16 32 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 33 H 0.10 3.48 7.36 -2.39 -0.02 3.46 16 34 H 0.10 3.61 6.34 -2.39 -0.02 3.59 16 35 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 36 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -69.46 343.02 5.71 -63.75 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.99 Total: 25.00 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 4.23 Total: -26.36 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -1.49 Total: -68.74 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.05 Total: -38.21 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -69.46 5.71 -63.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346511768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.254 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds