Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99404 * 2 1 4 4 O 1.42896 * 109.46987 * 135.00429 * 3 2 1 5 5 C 1.35902 * 117.00058 * 179.97438 * 4 3 2 6 6 C 1.38752 * 120.05259 * 0.02562 * 5 4 3 7 7 C 1.38122 * 119.94179 * 179.97438 * 6 5 4 8 8 C 1.38285 * 120.05549 * 359.73808 * 7 6 5 9 9 C 1.38250 * 120.11128 * 0.51900 * 8 7 6 10 10 C 1.50705 * 119.96987 * 179.76618 * 9 8 7 11 11 N 1.46906 * 109.46852 * 269.71810 * 10 9 8 12 12 C 1.46894 * 110.99880 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47155 * 185.38213 * 12 11 10 14 14 C 1.50708 * 115.54730 * 294.80053 * 13 12 11 15 15 H 1.07994 * 120.00501 * 95.20134 * 14 13 12 16 16 C 1.37881 * 119.99823 * 274.92856 * 14 13 12 17 17 N 1.31521 * 119.99926 * 355.42157 * 16 14 13 18 18 Si 1.86801 * 120.00038 * 175.41588 * 16 14 13 19 19 H 1.48495 * 109.46929 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46745 * 120.00135 * 18 16 14 21 21 H 1.48498 * 109.47103 * 239.99813 * 18 16 14 22 22 C 1.52996 * 117.50305 * 80.46470 * 13 12 11 23 23 C 1.52994 * 117.50444 * 149.12972 * 13 12 11 24 24 C 1.38156 * 120.05492 * 359.48508 * 9 8 7 25 25 H 1.08004 * 119.99444 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00417 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00417 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47061 * 14.99996 * 3 2 1 29 29 H 1.09006 * 109.46636 * 255.00124 * 3 2 1 30 30 H 1.07997 * 120.03194 * 359.95389 * 6 5 4 31 31 H 1.07998 * 119.97150 * 180.02562 * 7 6 5 32 32 H 1.08002 * 119.94741 * 180.27851 * 8 7 6 33 33 H 1.08996 * 109.46881 * 149.72405 * 10 9 8 34 34 H 1.09001 * 109.47345 * 29.71651 * 10 9 8 35 35 H 1.00901 * 110.99671 * 303.95835 * 11 10 9 36 36 H 1.08995 * 109.47366 * 65.38019 * 12 11 10 37 37 H 1.09006 * 109.46837 * 305.37455 * 12 11 10 38 38 H 0.96995 * 119.99832 * 185.00406 * 17 16 14 39 39 H 1.08999 * 117.50032 * 215.00249 * 22 13 12 40 40 H 1.09002 * 117.49839 * 0.02981 * 22 13 12 41 41 H 1.09004 * 117.49798 * 359.97366 * 23 13 12 42 42 H 1.09005 * 117.50278 * 144.97026 * 23 13 12 43 43 H 1.08003 * 120.02941 * 180.23721 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2415 0.9526 5 6 3.9096 2.3452 1.0781 6 6 3.6592 3.4668 0.3007 7 6 4.4560 4.5875 0.4305 8 6 5.4992 4.5942 1.3383 9 6 5.7540 3.4759 2.1102 10 6 6.8950 3.4848 3.0947 11 7 8.1143 2.9979 2.4356 12 6 9.2499 2.9921 3.3673 13 6 10.5255 2.6090 2.6142 14 6 10.5572 1.2076 2.0605 15 1 10.2687 1.0251 1.0360 16 6 10.9602 0.1593 2.8605 17 7 11.4022 0.3926 4.0770 18 14 10.8781 -1.5922 2.2164 19 1 10.3490 -1.5850 0.8289 20 1 12.2390 -2.1865 2.2237 21 1 9.9817 -2.3973 3.0844 22 6 11.2246 3.7038 1.8059 23 6 11.8450 3.2018 3.1122 24 6 4.9600 2.3524 1.9841 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4754 1.4869 -0.9927 30 1 2.8422 3.4635 -0.4056 31 1 4.2613 5.4610 -0.1740 32 1 6.1184 5.4730 1.4416 33 1 6.6535 2.8362 3.9367 34 1 7.0573 4.5011 3.4538 35 1 7.9689 2.0823 2.0373 36 1 9.0652 2.2682 4.1608 37 1 9.3687 3.9849 3.8014 38 1 11.7534 -0.3353 4.6133 39 1 11.7076 3.4105 0.8739 40 1 10.7762 4.6973 1.8110 41 1 11.8045 3.8653 3.9761 42 1 12.7362 2.5782 3.0398 43 1 5.1570 1.4805 2.5901 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430033498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = 30.078755 kcal Electronic energy + Delta-G solvation = -21681.498757 eV Core-core repulsion = 18500.103160 eV Total energy + Delta-G solvation = -3181.395596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16261 -37.96533 -36.78433 -34.57546 -34.12324 -31.86650 -30.96296 -29.94540 -26.94021 -26.21887 -25.18951 -23.13907 -22.37016 -21.09155 -20.81012 -20.15549 -19.05057 -17.74383 -16.57878 -16.00563 -15.93399 -15.86955 -14.97408 -14.62054 -14.49546 -14.29939 -13.87701 -13.68306 -13.51846 -13.19575 -12.67885 -12.58192 -12.44705 -11.86895 -11.52952 -11.41472 -11.27832 -11.16680 -11.09583 -10.93517 -10.83893 -10.66186 -10.39435 -10.04775 -9.84573 -9.31614 -8.81914 -8.77112 -8.35995 -8.12497 -7.98735 -7.49402 -5.98197 -4.05325 1.40297 1.56093 1.72903 3.23705 3.29490 3.38481 3.43103 3.84529 4.43252 4.49646 4.69041 4.82670 4.88755 4.99157 5.07946 5.10194 5.22826 5.30042 5.41620 5.47222 5.53975 5.61029 5.71302 5.84149 6.00030 6.14709 6.16606 6.22614 6.25344 6.35553 6.50394 6.52561 6.60254 6.78594 6.84840 6.87140 6.89513 6.96743 7.24867 7.42739 7.54236 7.64850 7.92205 7.98994 8.26535 8.54470 8.98828 9.60553 11.08927 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.003720 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.007585 B = 7525.969956 C = 8956.191741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C 0.087 3.913 4 O -0.313 6.313 5 C 0.126 3.874 6 C -0.216 4.216 7 C -0.084 4.084 8 C -0.134 4.134 9 C -0.029 4.029 10 C 0.093 3.907 11 N -0.674 5.674 12 C 0.105 3.895 13 C 0.047 3.953 14 C -0.491 4.491 15 H 0.060 0.940 16 C 0.069 3.931 17 N -0.880 5.880 18 Si 0.886 3.114 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.201 4.201 23 C -0.156 4.156 24 C -0.144 4.144 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.349 0.651 36 H 0.031 0.969 37 H 0.040 0.960 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.808 4.941 -5.720 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.171 4.171 3 C 0.012 3.988 4 O -0.227 6.227 5 C 0.081 3.919 6 C -0.235 4.235 7 C -0.102 4.102 8 C -0.153 4.153 9 C -0.030 4.030 10 C -0.036 4.036 11 N -0.305 5.305 12 C -0.023 4.023 13 C 0.046 3.954 14 C -0.529 4.529 15 H 0.078 0.922 16 C -0.134 4.134 17 N -0.518 5.518 18 Si 0.713 3.287 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.238 4.238 23 C -0.194 4.194 24 C -0.163 4.163 25 H 0.125 0.875 26 H 0.117 0.883 27 H 0.138 0.862 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.168 0.832 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.618 5.261 -5.679 20.163 hybrid contribution -0.241 -1.666 0.100 1.686 sum -18.858 3.595 -5.579 19.992 Atomic orbital electron populations 1.23860 0.95403 1.02472 0.99525 1.22724 0.95676 0.98014 1.00673 1.21783 0.87987 0.96570 0.92432 1.86089 1.42094 1.36039 1.58470 1.18905 0.91575 0.85843 0.95602 1.21130 1.03897 0.94629 1.03822 1.20884 0.94606 0.97247 0.97474 1.20958 0.98256 0.98867 0.97240 1.19728 0.94534 0.92486 0.96215 1.20919 0.88675 1.00933 0.93111 1.60521 1.02170 1.33172 1.34678 1.21481 0.90516 0.97338 0.93009 1.18732 0.88068 0.91880 0.96722 1.20525 1.45335 0.89635 0.97394 0.92166 1.25007 0.95003 0.98676 0.94700 1.70020 1.40873 1.31805 1.09052 0.86637 0.77675 0.85201 0.79146 1.19635 1.21118 1.21082 1.22865 1.07376 0.98316 0.95230 1.22502 0.99983 1.02464 0.94452 1.20359 0.95535 0.99651 1.00805 0.87485 0.88312 0.86154 0.91652 0.91054 0.86040 0.86038 0.85739 0.94894 0.90677 0.83189 0.95040 0.94166 0.93222 0.90979 0.91773 0.92361 0.90009 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 14.31 29.01 0.42 -0.79 16 2 C -0.15 -1.33 9.89 -36.02 -0.36 -1.68 16 3 C 0.09 0.85 5.15 36.01 0.19 1.03 16 4 O -0.31 -4.22 10.12 -19.43 -0.20 -4.41 16 5 C 0.13 1.77 6.69 -39.22 -0.26 1.50 16 6 C -0.22 -2.63 9.04 -39.43 -0.36 -2.99 16 7 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 8 C -0.13 -1.84 9.70 -39.56 -0.38 -2.22 16 9 C -0.03 -0.44 5.39 -104.65 -0.56 -1.00 16 10 C 0.09 1.51 5.80 -4.97 -0.03 1.48 16 11 N -0.67 -13.31 6.46 -115.06 -0.74 -14.05 16 12 C 0.11 2.34 5.54 -3.83 -0.02 2.32 16 13 C 0.05 1.15 1.65 -155.66 -0.26 0.90 16 14 C -0.49 -13.29 8.33 -34.43 -0.29 -13.58 16 15 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 16 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 17 N -0.88 -24.89 12.65 55.43 0.70 -24.19 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.20 -4.56 9.96 -26.70 -0.27 -4.82 16 23 C -0.16 -3.76 9.14 -26.70 -0.24 -4.00 16 24 C -0.14 -2.19 9.64 -39.44 -0.38 -2.57 16 25 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 26 H 0.10 0.57 7.90 -52.49 -0.41 0.16 16 27 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.07 0.54 7.38 -51.93 -0.38 0.16 16 29 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 30 H 0.12 1.17 6.30 -52.49 -0.33 0.84 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.35 7.36 8.30 -39.29 -0.33 7.03 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 39 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 43 H 0.13 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -29.12 364.71 -9.95 -39.07 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.89 Total: 8.00 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -3.30 Total: -26.05 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.04 Total: -38.24 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.20 Total: -4.41 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.12 -9.95 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430033498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.148 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds