Wall clock time and date at job start Tue Mar 31 2020 05:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 N 1.46495 * 109.47270 * 172.59048 * 3 2 1 5 5 C 1.36867 * 120.00182 * 76.59314 * 4 3 2 6 6 H 1.07998 * 120.00359 * 168.62972 * 5 4 3 7 7 C 1.39054 * 119.99649 * 348.63227 * 5 4 3 8 8 N 1.31354 * 120.00430 * 27.72064 * 7 5 4 9 9 Si 1.86808 * 119.99678 * 207.72027 * 7 5 4 10 10 H 1.48501 * 109.47005 * 89.99864 * 9 7 5 11 11 H 1.48500 * 109.47125 * 209.99962 * 9 7 5 12 12 H 1.48495 * 109.47021 * 329.99970 * 9 7 5 13 13 C 1.34774 * 120.00113 * 256.59601 * 4 3 2 14 14 O 1.21595 * 120.00458 * 176.03739 * 13 4 3 15 15 C 1.47734 * 119.99973 * 356.30809 * 13 4 3 16 16 C 1.39561 * 120.04579 * 57.43633 * 15 13 4 17 17 C 1.37919 * 119.75762 * 179.75114 * 16 15 13 18 18 C 1.38275 * 120.10079 * 0.50648 * 17 16 15 19 19 C 1.50699 * 119.72653 * 179.73300 * 18 17 16 20 20 C 1.38633 * 120.54493 * 359.75431 * 18 17 16 21 21 C 1.37961 * 119.93066 * 359.97438 * 20 18 17 22 22 C 1.51353 * 109.83107 * 179.97438 * 21 20 18 23 23 C 1.54353 * 105.14928 * 17.16810 * 22 21 20 24 24 C 1.51397 * 130.30447 * 179.97438 * 20 18 17 25 25 H 1.09003 * 109.47059 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47356 * 299.99559 * 1 2 3 27 27 H 1.09004 * 109.47380 * 59.99793 * 1 2 3 28 28 H 1.09009 * 109.46788 * 240.00362 * 2 1 3 29 29 H 1.08998 * 109.47578 * 120.00582 * 2 1 3 30 30 H 1.09007 * 109.46927 * 52.59003 * 3 2 1 31 31 H 1.09001 * 109.47055 * 292.59224 * 3 2 1 32 32 H 0.97001 * 120.00310 * 179.97438 * 8 7 5 33 33 H 1.07995 * 120.11918 * 359.97438 * 16 15 13 34 34 H 1.07994 * 119.94829 * 180.25887 * 17 16 15 35 35 H 1.09002 * 109.47340 * 270.02298 * 19 18 17 36 36 H 1.09001 * 109.47322 * 30.02069 * 19 18 17 37 37 H 1.08994 * 109.47218 * 150.02463 * 19 18 17 38 38 H 1.08997 * 110.30278 * 136.08333 * 22 21 20 39 39 H 1.08994 * 110.30815 * 258.24767 * 22 21 20 40 40 H 1.09004 * 110.82958 * 91.91442 * 23 22 21 41 41 H 1.09000 * 110.82988 * 215.28035 * 23 22 21 42 42 H 1.08992 * 110.30470 * 43.91424 * 24 20 18 43 43 H 1.09004 * 110.30386 * 281.76181 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4941 1.4463 0.1781 5 6 4.3128 1.1240 -0.8702 6 1 5.3758 1.3016 -0.7997 7 6 3.7760 0.5678 -2.0261 8 7 2.5349 0.8309 -2.3665 9 14 4.8200 -0.5536 -3.0949 10 1 4.6599 -1.9588 -2.6421 11 1 4.3833 -0.4365 -4.5094 12 1 6.2465 -0.1569 -2.9828 13 6 4.0256 1.7672 1.3743 14 8 5.2280 1.7008 1.5429 15 6 3.1469 2.1940 2.4826 16 6 2.1204 1.3570 2.9224 17 6 1.3068 1.7592 3.9609 18 6 1.5012 2.9917 4.5569 19 6 0.6034 3.4252 5.6870 20 6 2.5148 3.8321 4.1230 21 6 3.3392 3.4394 3.0888 22 6 4.3570 4.5227 2.8038 23 6 4.3452 5.4265 4.0550 24 6 2.9208 5.2079 4.6072 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5725 1.9931 0.8163 31 1 1.7889 1.9166 -0.9488 32 1 2.1606 0.4432 -3.1730 33 1 1.9660 0.3964 2.4537 34 1 0.5142 1.1122 4.3065 35 1 -0.2576 3.9579 5.2832 36 1 0.2626 2.5482 6.2372 37 1 1.1557 4.0831 6.3579 38 1 5.3453 4.0853 2.6625 39 1 4.0653 5.0933 1.9222 40 1 5.0943 5.0998 4.7763 41 1 4.5024 6.4697 3.7810 42 1 2.9283 5.2384 5.6966 43 1 2.2422 5.9636 4.2115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448764022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:02 Heat of formation + Delta-G solvation = -9.731617 kcal Electronic energy + Delta-G solvation = -23609.837030 eV Core-core repulsion = 20426.715126 eV Total energy + Delta-G solvation = -3183.121904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.11618 -38.19282 -35.55441 -35.26190 -32.83875 -31.97945 -31.37791 -28.73941 -27.73758 -26.91912 -25.59975 -24.31325 -21.99072 -20.87949 -20.76706 -20.39293 -18.69187 -16.94812 -16.25202 -15.70842 -15.32738 -14.94109 -14.52263 -14.15784 -13.83558 -13.60276 -13.47613 -13.33502 -12.91962 -12.68194 -12.56090 -12.28469 -11.89266 -11.86033 -11.69638 -11.52102 -11.25296 -11.21433 -10.95653 -10.87035 -10.74259 -10.65950 -10.55221 -10.45460 -10.30436 -10.11015 -9.70968 -8.78125 -8.45662 -8.13365 -7.97862 -7.70098 -6.33019 -3.78429 1.58426 1.76581 3.15007 3.26240 3.31460 3.77641 4.07865 4.22068 4.67359 4.81236 4.89604 5.09601 5.15851 5.19054 5.30476 5.39487 5.50409 5.57335 5.66166 5.79034 5.87794 5.90279 5.92468 5.98215 6.00284 6.04551 6.06617 6.23526 6.26955 6.39957 6.43579 6.50887 6.54946 6.65820 6.79457 6.82430 6.87013 6.92234 7.04520 7.35327 7.38296 7.49287 7.67671 8.11215 8.52916 9.16322 9.44136 10.00865 10.57230 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.005643 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.780357 B = 4960.487221 C = 5915.169700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.108 3.892 4 N -0.429 5.429 5 C -0.309 4.309 6 H 0.105 0.895 7 C 0.039 3.961 8 N -0.854 5.854 9 Si 0.913 3.087 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.475 3.525 14 O -0.590 6.590 15 C -0.078 4.078 16 C -0.094 4.094 17 C -0.128 4.128 18 C -0.078 4.078 19 C -0.109 4.109 20 C -0.109 4.109 21 C -0.056 4.056 22 C -0.086 4.086 23 C -0.119 4.119 24 C -0.075 4.075 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.120 0.880 32 H 0.268 0.732 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 5.130 10.308 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.016 4.016 4 N -0.145 5.145 5 C -0.436 4.436 6 H 0.122 0.878 7 C -0.165 4.165 8 N -0.493 5.493 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.264 3.736 14 O -0.476 6.476 15 C -0.081 4.081 16 C -0.112 4.112 17 C -0.146 4.146 18 C -0.078 4.078 19 C -0.166 4.166 20 C -0.109 4.109 21 C -0.057 4.057 22 C -0.122 4.122 23 C -0.157 4.157 24 C -0.112 4.112 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.113 5.059 10.172 12.901 hybrid contribution 0.181 -0.795 -0.672 1.057 sum -5.931 4.264 9.500 11.984 Atomic orbital electron populations 1.21637 0.97165 1.00050 1.00942 1.21992 0.93981 0.98635 1.01691 1.21969 0.80157 0.96590 1.02839 1.43745 1.06038 1.56628 1.08117 1.19631 0.92556 1.38217 0.93217 0.87765 1.25176 0.96104 0.97687 0.97553 1.70020 1.15212 1.39981 1.24079 0.86139 0.80698 0.81061 0.78189 1.20299 1.21139 1.19306 1.17876 0.87627 0.85381 0.82765 1.90597 1.14923 1.59513 1.82549 1.19765 0.96418 0.93945 0.97997 1.21391 0.93779 0.99776 0.96282 1.20758 1.00375 0.96107 0.97408 1.19392 0.96337 0.94137 0.97951 1.20730 0.98429 1.01376 0.96071 1.20284 0.96475 0.96307 0.97880 1.20434 0.96561 0.93572 0.95125 1.21057 0.99180 0.94135 0.97870 1.22288 0.96399 0.99612 0.97355 1.20963 0.96646 0.93286 1.00256 0.94083 0.94024 0.92650 0.89585 0.94822 0.94163 0.86275 0.92111 0.85288 0.86140 0.91559 0.91935 0.91919 0.89594 0.90450 0.91166 0.90845 0.91195 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.12 -2.60 5.17 -26.73 -0.14 -2.74 16 3 C 0.11 2.45 4.26 -4.05 -0.02 2.44 16 4 N -0.43 -11.12 2.67 -115.93 -0.31 -11.43 16 5 C -0.31 -8.53 9.33 -15.00 -0.14 -8.67 16 6 H 0.10 3.07 7.38 -52.49 -0.39 2.68 16 7 C 0.04 0.99 4.41 -17.45 -0.08 0.91 16 8 N -0.85 -21.24 8.38 55.50 0.47 -20.78 16 9 Si 0.91 20.38 29.63 -169.99 -5.04 15.35 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 13 C 0.47 12.20 6.84 -12.38 -0.08 12.12 16 14 O -0.59 -17.03 16.36 5.28 0.09 -16.95 16 15 C -0.08 -1.67 4.62 -104.92 -0.48 -2.16 16 16 C -0.09 -1.75 7.70 -39.21 -0.30 -2.06 16 17 C -0.13 -2.00 9.67 -39.68 -0.38 -2.38 16 18 C -0.08 -1.15 5.89 -104.46 -0.62 -1.76 16 19 C -0.11 -1.18 9.86 36.01 0.35 -0.82 16 20 C -0.11 -1.74 6.00 -104.24 -0.63 -2.37 16 21 C -0.06 -1.07 6.04 -103.80 -0.63 -1.69 16 22 C -0.09 -1.47 6.44 -26.85 -0.17 -1.64 16 23 C -0.12 -1.54 7.08 -25.33 -0.18 -1.71 16 24 C -0.07 -0.93 6.26 -26.85 -0.17 -1.10 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 2.01 5.61 -51.92 -0.29 1.72 16 29 H 0.03 0.69 6.31 -51.93 -0.33 0.37 16 30 H 0.04 0.86 5.36 -51.93 -0.28 0.58 16 31 H 0.12 2.95 5.88 -51.93 -0.31 2.65 16 32 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 33 H 0.13 2.42 5.44 -52.49 -0.29 2.14 16 34 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.06 0.61 7.26 -51.93 -0.38 0.23 16 38 H 0.09 1.66 7.79 -51.93 -0.40 1.25 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.75 7.60 -51.93 -0.39 0.35 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -29.76 336.06 -9.43 -39.19 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.41 Total: 5.21 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.29 Total: -15.66 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.16 Total: -32.21 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.09 Total: -16.95 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.04 Total: 15.35 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.76 -9.43 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448764022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.459 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds