Wall clock time and date at job start Tue Mar 31 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.34422 * 2 1 4 4 C 1.53741 * 110.30301 * 122.11465 * 2 1 3 5 5 C 1.51211 * 104.58295 * 118.92679 * 4 2 1 6 6 C 1.38193 * 130.97368 * 180.02562 * 5 4 2 7 7 C 1.38216 * 120.15169 * 179.97438 * 6 5 4 8 8 C 1.38306 * 119.83154 * 359.97438 * 7 6 5 9 9 C 1.37841 * 120.21857 * 0.02562 * 8 7 6 10 10 C 1.38566 * 108.56439 * 0.26076 * 5 4 2 11 11 N 1.39835 * 111.60915 * 359.56420 * 10 5 4 12 12 C 1.34779 * 124.97826 * 180.19146 * 11 10 5 13 13 O 1.21285 * 120.00588 * 180.29168 * 12 11 10 14 14 C 1.50703 * 119.99672 * 0.28689 * 12 11 10 15 15 C 1.53003 * 109.47272 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47301 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47154 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47387 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99605 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00318 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99642 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99835 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47206 * 89.99892 * 22 20 18 24 24 H 1.48503 * 109.47080 * 209.99794 * 22 20 18 25 25 H 1.48497 * 109.47480 * 329.99450 * 22 20 18 26 26 H 1.09001 * 109.46549 * 299.33867 * 1 2 3 27 27 H 1.09000 * 109.47215 * 59.33898 * 1 2 3 28 28 H 1.08995 * 109.46669 * 179.33736 * 1 2 3 29 29 H 1.09009 * 110.40841 * 0.15568 * 4 2 1 30 30 H 1.08993 * 110.51506 * 237.75789 * 4 2 1 31 31 H 1.07996 * 119.92190 * 359.95357 * 6 5 4 32 32 H 1.08003 * 120.08887 * 179.97438 * 7 6 5 33 33 H 1.07991 * 119.88882 * 180.02562 * 8 7 6 34 34 H 1.08002 * 119.85292 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47341 * 300.00011 * 14 12 11 36 36 H 1.09001 * 109.47063 * 60.00299 * 14 12 11 37 37 H 1.08995 * 109.46802 * 300.00344 * 15 14 12 38 38 H 1.09001 * 109.47130 * 59.99976 * 15 14 12 39 39 H 1.09004 * 109.46759 * 299.99905 * 16 15 14 40 40 H 1.08993 * 109.47368 * 59.99546 * 16 15 14 41 41 H 1.09010 * 109.47007 * 299.99873 * 17 16 15 42 42 H 1.08993 * 109.47680 * 59.99338 * 17 16 15 43 43 H 0.96999 * 119.99666 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0635 -0.7665 1.2213 5 6 2.8594 -1.9106 0.6348 6 6 3.5672 -2.9286 1.2450 7 6 4.2240 -3.8734 0.4792 8 6 4.1710 -3.7983 -0.9008 9 6 3.4662 -2.7846 -1.5138 10 6 2.8055 -1.8228 -0.7471 11 7 2.0384 -0.7306 -1.1641 12 6 1.8053 -0.3956 -2.4487 13 8 1.1287 0.5768 -2.7087 14 6 2.3854 -1.2294 -3.5619 15 6 1.9736 -0.6366 -4.9110 16 6 2.5621 -1.4835 -6.0412 17 6 2.1509 -0.8903 -7.3902 18 6 2.7299 -1.7247 -8.5034 19 1 3.3315 -2.5912 -8.2719 20 6 2.4917 -1.3819 -9.8176 21 7 1.7588 -0.3270 -10.0994 22 14 3.2101 -2.4159 -11.1974 23 1 2.2508 -3.4889 -11.5630 24 1 3.4643 -1.5550 -12.3804 25 1 4.4865 -3.0260 -10.7459 26 1 -0.3632 0.5035 0.8959 27 1 -0.3634 0.5241 -0.8840 28 1 -0.3632 -1.0276 -0.0119 29 1 1.2372 -1.1469 1.8220 30 1 2.7068 -0.1252 1.8236 31 1 3.6075 -2.9859 2.3227 32 1 4.7772 -4.6684 0.9572 33 1 4.6834 -4.5362 -1.5000 34 1 3.4291 -2.7314 -2.5918 35 1 3.4727 -1.2337 -3.4840 36 1 2.0115 -2.2503 -3.4840 37 1 0.8865 -0.6319 -4.9891 38 1 2.3479 0.3842 -4.9887 39 1 3.6493 -1.4884 -5.9632 40 1 2.1876 -2.5041 -5.9633 41 1 1.0636 -0.8849 -7.4684 42 1 2.5256 0.1303 -7.4678 43 1 1.5909 -0.0861 -11.0239 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588748740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:51 Heat of formation + Delta-G solvation = -23.180131 kcal Electronic energy + Delta-G solvation = -22125.553798 eV Core-core repulsion = 18941.848723 eV Total energy + Delta-G solvation = -3183.705075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50111 -38.93874 -36.81387 -34.97640 -33.48600 -32.44095 -31.15905 -29.87235 -29.66343 -26.73393 -25.94709 -23.66898 -22.37981 -22.04729 -21.13567 -20.00935 -19.70712 -17.22439 -16.85135 -16.27844 -16.17647 -15.79125 -15.16256 -14.69936 -14.57948 -14.27732 -14.08524 -13.90979 -13.41108 -13.11075 -12.82781 -12.71564 -12.53569 -12.31646 -12.10944 -11.87814 -11.62770 -11.60447 -11.35499 -10.99627 -10.96317 -10.58926 -10.51893 -10.45822 -10.37226 -9.96519 -9.62564 -9.24160 -9.05425 -8.99185 -8.30370 -7.99446 -5.95111 -3.97638 1.04020 1.11718 2.56728 2.58591 3.34368 3.40395 3.43589 3.55434 4.05558 4.19155 4.48597 4.54251 4.65486 4.73299 4.84753 5.00776 5.07854 5.17737 5.20461 5.23050 5.26470 5.32134 5.40341 5.41917 5.55658 5.68423 5.71036 5.82387 5.92893 5.99894 6.08925 6.18283 6.21871 6.27287 6.33750 6.51170 6.69997 6.80563 6.97951 7.18329 7.30333 7.73908 7.89397 7.94514 8.06080 8.47790 9.09985 9.66036 11.16268 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.003145 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.103303 B = 8899.492683 C =10034.792728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 H 0.089 0.911 4 C -0.083 4.083 5 C -0.141 4.141 6 C -0.076 4.076 7 C -0.148 4.148 8 C -0.085 4.085 9 C -0.162 4.162 10 C 0.153 3.847 11 N -0.556 5.556 12 C 0.525 3.475 13 O -0.510 6.510 14 C -0.143 4.143 15 C -0.105 4.105 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -4.717 27.121 27.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.107 0.893 4 C -0.120 4.120 5 C -0.144 4.144 6 C -0.094 4.094 7 C -0.167 4.167 8 C -0.103 4.103 9 C -0.183 4.183 10 C 0.057 3.943 11 N -0.279 5.279 12 C 0.316 3.684 13 O -0.383 6.383 14 C -0.182 4.182 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.202 -3.935 26.683 27.061 hybrid contribution 0.390 -0.543 -0.792 1.036 sum 2.592 -4.478 25.891 26.403 Atomic orbital electron populations 1.22164 0.93523 1.02804 1.03610 1.21622 0.95539 0.96428 0.83427 0.89333 1.21214 0.99292 0.94598 0.96870 1.20016 1.02839 0.98865 0.92711 1.20376 0.96125 0.93202 0.99714 1.21022 1.01831 0.99893 0.93941 1.20951 0.97394 0.97171 0.94794 1.21274 1.00688 0.95077 1.01220 1.18402 0.93559 0.88944 0.93443 1.46292 1.48519 1.26510 1.06624 1.21104 0.79897 0.85435 0.81940 1.90713 1.37515 1.27431 1.82664 1.22196 1.02124 0.99938 0.93952 1.21520 1.01659 1.00110 0.91017 1.21652 0.99194 0.98126 0.95807 1.19089 0.96767 0.96161 0.89666 1.21278 1.31795 1.11706 0.91094 0.92727 1.25041 0.95366 0.95232 0.98931 1.69974 1.38849 1.25808 1.18838 0.86608 0.79485 0.80177 0.81806 1.20701 1.21259 1.19893 0.91049 0.90554 0.92203 0.89081 0.89276 0.85888 0.85677 0.85210 0.83990 0.88395 0.88385 0.91652 0.91641 0.93368 0.93366 0.96588 0.96571 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.03 37.16 0.34 -1.27 16 2 C 0.13 1.36 3.65 -67.52 -0.25 1.12 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.08 -0.65 6.58 -27.25 -0.18 -0.83 16 5 C -0.14 -1.36 6.23 -104.27 -0.65 -2.01 16 6 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 7 C -0.15 -1.18 10.06 -39.56 -0.40 -1.57 16 8 C -0.08 -0.75 10.02 -39.70 -0.40 -1.15 16 9 C -0.16 -1.72 8.88 -39.21 -0.35 -2.07 16 10 C 0.15 1.75 6.59 -83.57 -0.55 1.20 16 11 N -0.56 -7.04 2.89 -105.84 -0.31 -7.34 16 12 C 0.52 7.97 7.59 -10.98 -0.08 7.88 16 13 O -0.51 -9.29 14.93 5.55 0.08 -9.21 16 14 C -0.14 -2.04 3.53 -27.88 -0.10 -2.13 16 15 C -0.11 -1.90 4.50 -26.73 -0.12 -2.02 16 16 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 17 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 18 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 22 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.95 6.85 -51.93 -0.36 0.59 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.58 7.71 -51.92 -0.40 0.18 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 1.47 4.21 -52.49 -0.22 1.25 16 35 H 0.10 1.25 6.91 -51.93 -0.36 0.89 16 36 H 0.10 1.25 6.91 -51.93 -0.36 0.89 16 37 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -33.47 347.49 -9.82 -43.29 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.73 Total: -2.33 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -3.82 Total: -19.70 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.43 Total: -34.21 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.47 -9.82 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588748740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.108 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds