Wall clock time and date at job start Tue Mar 31 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 O 1.42903 * 109.46981 * 119.99789 * 2 1 3 5 5 C 1.35589 * 117.00031 * 85.68492 * 4 2 1 6 6 C 1.39113 * 119.89202 * 354.61504 * 5 4 2 7 7 C 1.36429 * 120.45595 * 179.69881 * 6 5 4 8 8 C 1.40932 * 120.23432 * 0.27789 * 7 6 5 9 9 C 1.41248 * 120.10485 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00572 * 332.14270 * 9 8 7 11 11 C 1.39861 * 119.99763 * 152.13759 * 9 8 7 12 12 N 1.30894 * 119.99987 * 347.22275 * 11 9 8 13 13 Si 1.86803 * 120.00101 * 167.22352 * 11 9 8 14 14 H 1.48502 * 109.47011 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47166 * 120.00050 * 13 11 9 16 16 H 1.48502 * 109.47019 * 240.00248 * 13 11 9 17 17 C 1.40563 * 119.78620 * 359.97438 * 8 7 6 18 18 C 1.38816 * 119.54647 * 0.02562 * 17 8 7 19 19 C 1.47747 * 120.11483 * 180.02562 * 18 17 8 20 20 C 1.31535 * 118.65999 * 105.00002 * 19 18 17 21 21 C 1.50168 * 123.04649 * 180.31541 * 20 19 18 22 22 N 1.46836 * 110.25277 * 342.91905 * 21 20 19 23 23 C 1.47220 * 110.26519 * 51.18770 * 22 21 20 24 24 C 1.50331 * 118.66364 * 284.72772 * 19 18 17 25 25 H 1.09001 * 109.47510 * 60.00471 * 1 2 3 26 26 H 1.09010 * 109.47137 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47285 * 300.00033 * 1 2 3 28 28 H 1.08992 * 109.47090 * 239.99702 * 2 1 3 29 29 H 1.08999 * 109.47328 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46999 * 300.00425 * 3 2 1 31 31 H 1.09008 * 109.47103 * 59.99855 * 3 2 1 32 32 H 1.07996 * 119.77181 * 359.97438 * 6 5 4 33 33 H 1.08003 * 119.88064 * 180.29698 * 7 6 5 34 34 H 0.96996 * 120.00422 * 179.97438 * 12 11 9 35 35 H 1.07992 * 120.22563 * 180.02562 * 17 8 7 36 36 H 1.07996 * 118.47716 * 0.29127 * 20 19 18 37 37 H 1.09004 * 109.34497 * 103.15708 * 21 20 19 38 38 H 1.08995 * 109.34244 * 222.84178 * 21 20 19 39 39 H 1.00898 * 111.00174 * 287.76063 * 22 21 20 40 40 H 1.09003 * 109.62521 * 50.40504 * 23 22 21 41 41 H 1.09002 * 109.62760 * 170.79158 * 23 22 21 42 42 H 1.09005 * 109.43158 * 283.56701 * 24 19 18 43 43 H 1.09004 * 109.42835 * 43.42446 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1258 -2.0222 1.0934 6 6 1.6852 -2.6965 -0.0408 7 6 1.8054 -4.0526 -0.1295 8 6 2.3731 -4.7856 0.9320 9 6 2.4957 -6.1896 0.8375 10 1 1.8035 -6.7525 0.2289 11 6 3.5137 -6.8509 1.5321 12 7 4.4958 -6.1667 2.0619 13 14 3.4718 -8.7106 1.7037 14 1 2.2655 -9.2436 1.0211 15 1 4.6895 -9.2924 1.0842 16 1 3.4266 -9.0739 3.1429 17 6 2.8168 -4.1150 2.0849 18 6 2.6901 -2.7350 2.1656 19 6 3.1528 -2.0174 3.3713 20 6 4.2738 -1.3324 3.3064 21 6 4.8382 -0.5730 4.4726 22 7 3.8050 -0.3725 5.4965 23 6 3.1576 -1.6532 5.8253 24 6 2.3200 -2.0947 4.6205 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.2491 -2.1422 -0.8586 33 1 1.4646 -4.5662 -1.0164 34 1 5.2016 -6.6253 2.5440 35 1 3.2532 -4.6697 2.9023 36 1 4.8136 -1.3155 2.3712 37 1 5.6676 -1.1349 4.9020 38 1 5.1979 0.3976 4.1313 39 1 3.1251 0.3095 5.1955 40 1 3.9184 -2.4032 6.0414 41 1 2.5125 -1.5248 6.6946 42 1 1.4526 -1.4424 4.5190 43 1 1.9855 -3.1212 4.7703 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592987824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:07 Heat of formation + Delta-G solvation = -16.056991 kcal Electronic energy + Delta-G solvation = -23160.139675 eV Core-core repulsion = 19976.743483 eV Total energy + Delta-G solvation = -3183.396192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.32052 -38.16538 -36.55870 -33.70927 -32.52155 -32.14631 -30.38306 -29.07035 -28.36115 -27.04407 -24.92537 -23.59757 -22.70313 -22.18930 -20.54890 -19.91275 -18.07625 -17.12327 -17.05840 -15.48444 -15.14558 -14.74568 -14.62675 -14.41483 -14.25465 -13.67554 -13.52910 -13.29112 -12.96241 -12.60429 -12.47962 -12.26093 -12.12979 -12.00324 -11.83389 -11.64749 -11.53376 -11.21235 -11.10383 -11.01177 -10.98347 -10.67958 -10.44181 -10.39684 -9.89770 -9.76845 -9.42493 -9.07861 -8.24377 -8.12701 -7.45513 -6.96302 -6.67584 -4.27928 2.59494 2.81966 2.96059 3.09102 3.13925 3.18056 3.96109 4.10866 4.56895 4.59241 5.11530 5.24528 5.26938 5.41212 5.43713 5.51705 5.54479 5.68261 5.69843 5.80240 5.87084 5.91720 5.97996 6.01188 6.06447 6.12672 6.20469 6.22979 6.27202 6.36368 6.42746 6.58788 6.95929 7.06025 7.09771 7.18635 7.21736 7.39505 7.47130 7.57084 7.67914 7.75671 7.97415 8.18447 8.46207 8.63900 8.90228 8.95713 10.26440 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.006216 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.666460 B = 4503.609236 C = 6198.481319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 C -0.144 4.144 4 O -0.315 6.315 5 C 0.018 3.982 6 C -0.175 4.175 7 C -0.187 4.187 8 C 0.084 3.916 9 C -0.465 4.465 10 H 0.075 0.925 11 C 0.073 3.927 12 N -0.805 5.805 13 Si 0.907 3.093 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.273 1.273 17 C -0.110 4.110 18 C -0.073 4.073 19 C -0.036 4.036 20 C -0.204 4.204 21 C 0.093 3.907 22 N -0.684 5.684 23 C 0.056 3.944 24 C -0.116 4.116 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.278 0.722 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.339 0.661 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 9.483 1.824 10.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.023 3.977 3 C -0.201 4.201 4 O -0.230 6.230 5 C -0.025 4.025 6 C -0.194 4.194 7 C -0.207 4.207 8 C 0.081 3.919 9 C -0.495 4.495 10 H 0.093 0.907 11 C -0.143 4.143 12 N -0.432 5.432 13 Si 0.732 3.268 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.198 1.198 17 C -0.129 4.129 18 C -0.074 4.074 19 C -0.036 4.036 20 C -0.224 4.224 21 C -0.036 4.036 22 N -0.312 5.312 23 C -0.074 4.074 24 C -0.155 4.155 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.155 0.845 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.945 9.546 2.657 10.098 hybrid contribution -0.579 -1.228 -1.298 1.878 sum -2.525 8.318 1.360 8.798 Atomic orbital electron populations 1.22335 0.96342 1.02850 1.01715 1.22093 0.93485 0.92958 0.89176 1.21803 1.01752 0.94643 1.01950 1.85911 1.82744 1.17983 1.36396 1.18563 1.06664 0.80941 0.96353 1.20385 1.06366 0.95553 0.97108 1.20663 1.08770 0.92595 0.98632 1.17516 0.90820 0.93524 0.89994 1.19446 1.12260 0.91913 1.25911 0.90652 1.25829 0.94220 1.00659 0.93541 1.69813 1.08020 1.37731 1.27680 0.86282 0.79088 0.82633 0.78814 1.18593 1.20101 1.19837 1.21340 1.02524 0.90303 0.98780 1.18081 1.03891 0.93087 0.92349 1.19546 0.94754 0.95763 0.93549 1.22954 0.98273 1.01464 0.99711 1.20803 0.94644 0.99170 0.88971 1.61130 1.17107 1.09963 1.42967 1.22132 0.97346 0.91540 0.96366 1.21137 0.98207 1.02691 0.93442 0.92222 0.91783 0.92202 0.91782 0.92115 0.91552 0.92094 0.88386 0.88774 0.91107 0.85391 0.87904 0.90561 0.90770 0.84473 0.90817 0.90839 0.91140 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.18 37.16 0.34 -2.11 16 2 C 0.08 1.26 2.84 -26.73 -0.08 1.19 16 3 C -0.14 -1.83 9.56 37.16 0.36 -1.47 16 4 O -0.31 -6.23 9.21 -18.46 -0.17 -6.41 16 5 C 0.02 0.41 6.64 -38.38 -0.25 0.16 16 6 C -0.18 -3.89 8.19 -39.91 -0.33 -4.22 16 7 C -0.19 -4.53 9.72 -39.21 -0.38 -4.91 16 8 C 0.08 2.21 5.55 -106.86 -0.59 1.61 16 9 C -0.46 -12.27 9.04 -37.83 -0.34 -12.61 16 10 H 0.08 1.92 7.88 -52.49 -0.41 1.51 16 11 C 0.07 1.84 5.21 -17.34 -0.09 1.75 16 12 N -0.81 -20.92 10.88 55.54 0.60 -20.32 16 13 Si 0.91 18.83 29.58 -169.99 -5.03 13.81 16 14 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 C -0.11 -2.82 8.39 -38.49 -0.32 -3.14 16 18 C -0.07 -1.71 5.12 -104.92 -0.54 -2.24 16 19 C -0.04 -0.72 4.80 -102.76 -0.49 -1.21 16 20 C -0.20 -3.81 9.58 -36.41 -0.35 -4.16 16 21 C 0.09 1.41 6.74 -5.27 -0.04 1.37 16 22 N -0.68 -9.78 6.97 -115.02 -0.80 -10.59 16 23 C 0.06 0.81 6.65 -3.53 -0.02 0.79 16 24 C -0.12 -1.99 5.94 -27.94 -0.17 -2.15 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.00 6.99 -51.92 -0.36 0.63 16 27 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.06 1.05 6.24 -51.93 -0.32 0.72 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.10 1.91 5.41 -52.49 -0.28 1.63 16 33 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 34 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 35 H 0.13 3.43 6.21 -52.49 -0.33 3.11 16 36 H 0.10 2.08 7.98 -52.49 -0.42 1.66 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.34 4.60 8.77 -39.29 -0.34 4.25 16 40 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -27.64 346.44 -10.15 -37.79 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.68 Total: 11.86 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: -3.29 Total: -31.37 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: -0.20 Total: -30.90 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.17 Total: -6.41 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.64 -10.15 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592987824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.731 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds