Wall clock time and date at job start Tue Mar 31 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 O 1.42903 * 109.46981 * 119.99789 * 2 1 3 5 5 C 1.35589 * 117.00031 * 85.68492 * 4 2 1 6 6 C 1.39113 * 119.89202 * 354.61504 * 5 4 2 7 7 C 1.36429 * 120.45595 * 179.69881 * 6 5 4 8 8 C 1.40932 * 120.23432 * 0.27789 * 7 6 5 9 9 C 1.41248 * 120.10485 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00572 * 332.14270 * 9 8 7 11 11 C 1.39861 * 119.99763 * 152.13759 * 9 8 7 12 12 N 1.30894 * 119.99987 * 347.22275 * 11 9 8 13 13 Si 1.86803 * 120.00101 * 167.22352 * 11 9 8 14 14 H 1.48502 * 109.47011 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47166 * 120.00050 * 13 11 9 16 16 H 1.48502 * 109.47019 * 240.00248 * 13 11 9 17 17 C 1.40563 * 119.78620 * 359.97438 * 8 7 6 18 18 C 1.38816 * 119.54647 * 0.02562 * 17 8 7 19 19 C 1.47747 * 120.11483 * 180.02562 * 18 17 8 20 20 C 1.31535 * 118.65999 * 105.00002 * 19 18 17 21 21 C 1.50168 * 123.04649 * 180.31541 * 20 19 18 22 22 N 1.46836 * 110.25277 * 342.91905 * 21 20 19 23 23 C 1.47220 * 110.26519 * 51.18770 * 22 21 20 24 24 C 1.50331 * 118.66364 * 284.72772 * 19 18 17 25 25 H 1.09001 * 109.47510 * 60.00471 * 1 2 3 26 26 H 1.09010 * 109.47137 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47285 * 300.00033 * 1 2 3 28 28 H 1.08992 * 109.47090 * 239.99702 * 2 1 3 29 29 H 1.08999 * 109.47328 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46999 * 300.00425 * 3 2 1 31 31 H 1.09008 * 109.47103 * 59.99855 * 3 2 1 32 32 H 1.07996 * 119.77181 * 359.97438 * 6 5 4 33 33 H 1.08003 * 119.88064 * 180.29698 * 7 6 5 34 34 H 0.96996 * 120.00422 * 179.97438 * 12 11 9 35 35 H 1.07992 * 120.22563 * 180.02562 * 17 8 7 36 36 H 1.07996 * 118.47716 * 0.29127 * 20 19 18 37 37 H 1.09004 * 109.34497 * 103.15708 * 21 20 19 38 38 H 1.08995 * 109.34244 * 222.84178 * 21 20 19 39 39 H 1.00898 * 111.00174 * 287.76063 * 22 21 20 40 40 H 1.09003 * 109.62521 * 50.40504 * 23 22 21 41 41 H 1.09002 * 109.62760 * 170.79158 * 23 22 21 42 42 H 1.09005 * 109.43158 * 283.56701 * 24 19 18 43 43 H 1.09004 * 109.42835 * 43.42446 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1258 -2.0222 1.0934 6 6 1.6852 -2.6965 -0.0408 7 6 1.8054 -4.0526 -0.1295 8 6 2.3731 -4.7856 0.9320 9 6 2.4957 -6.1896 0.8375 10 1 1.8035 -6.7525 0.2289 11 6 3.5137 -6.8509 1.5321 12 7 4.4958 -6.1667 2.0619 13 14 3.4718 -8.7106 1.7037 14 1 2.2655 -9.2436 1.0211 15 1 4.6895 -9.2924 1.0842 16 1 3.4266 -9.0739 3.1429 17 6 2.8168 -4.1150 2.0849 18 6 2.6901 -2.7350 2.1656 19 6 3.1528 -2.0174 3.3713 20 6 4.2738 -1.3324 3.3064 21 6 4.8382 -0.5730 4.4726 22 7 3.8050 -0.3725 5.4965 23 6 3.1576 -1.6532 5.8253 24 6 2.3200 -2.0947 4.6205 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.2491 -2.1422 -0.8586 33 1 1.4646 -4.5662 -1.0164 34 1 5.2016 -6.6253 2.5440 35 1 3.2532 -4.6697 2.9023 36 1 4.8136 -1.3155 2.3712 37 1 5.6676 -1.1349 4.9020 38 1 5.1979 0.3976 4.1313 39 1 3.1251 0.3095 5.1955 40 1 3.9184 -2.4032 6.0414 41 1 2.5125 -1.5248 6.6946 42 1 1.4526 -1.4424 4.5190 43 1 1.9855 -3.1212 4.7703 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592987824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:06 Heat of formation + Delta-G solvation = -31.156077 kcal Electronic energy + Delta-G solvation = -23160.794421 eV Core-core repulsion = 19976.743483 eV Total energy + Delta-G solvation = -3184.050938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93737 -39.52238 -38.26222 -35.44628 -34.12365 -33.49759 -31.69581 -30.92677 -30.03099 -28.14558 -26.77568 -25.02165 -24.01736 -23.74067 -22.24580 -21.44783 -19.66472 -18.76990 -18.65810 -17.21178 -16.71228 -16.26244 -16.10554 -15.75091 -15.60331 -15.17263 -15.10697 -14.79876 -14.46627 -14.09952 -13.86758 -13.71443 -13.36821 -13.34814 -13.17952 -13.12894 -12.93734 -12.89593 -12.77018 -12.50474 -12.32739 -12.25973 -11.83588 -11.74441 -11.66635 -11.41841 -11.13383 -10.90971 -9.76915 -9.42284 -9.26240 -8.81347 -8.54794 -6.25544 0.80736 1.00096 1.34819 1.37258 1.48711 1.51773 2.21745 2.62950 2.73735 3.37051 3.61680 3.94734 3.96551 4.06154 4.08573 4.17196 4.19085 4.31871 4.35817 4.49660 4.57041 4.71040 4.74655 4.76901 4.82535 4.85794 4.90552 4.93834 4.94747 5.06283 5.09067 5.20756 5.24891 5.30256 5.31667 5.49233 5.59702 5.67150 5.88327 5.95769 6.04244 6.15298 6.27218 6.46276 6.57916 6.82833 6.95856 7.10439 8.40184 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.006216 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.666460 B = 4503.609236 C = 6198.481319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 C -0.137 4.137 4 O -0.322 6.322 5 C 0.026 3.974 6 C -0.175 4.175 7 C -0.202 4.202 8 C 0.050 3.950 9 C -0.500 4.500 10 H 0.072 0.928 11 C 0.032 3.968 12 N -0.839 5.839 13 Si 0.980 3.020 14 H -0.259 1.259 15 H -0.268 1.268 16 H -0.265 1.265 17 C -0.130 4.130 18 C -0.083 4.083 19 C -0.061 4.061 20 C -0.194 4.194 21 C 0.099 3.901 22 N -0.674 5.674 23 C 0.064 3.936 24 C -0.109 4.109 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.284 0.716 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.346 0.654 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.011 11.282 2.268 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 C -0.194 4.194 4 O -0.238 6.238 5 C -0.019 4.019 6 C -0.193 4.193 7 C -0.221 4.221 8 C 0.048 3.952 9 C -0.531 4.531 10 H 0.090 0.910 11 C -0.180 4.180 12 N -0.466 5.466 13 Si 0.802 3.198 14 H -0.183 1.183 15 H -0.193 1.193 16 H -0.190 1.190 17 C -0.149 4.149 18 C -0.084 4.084 19 C -0.062 4.062 20 C -0.214 4.214 21 C -0.031 4.031 22 N -0.302 5.302 23 C -0.066 4.066 24 C -0.148 4.148 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.164 0.836 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.300 11.379 3.093 12.014 hybrid contribution -0.497 -1.583 -1.528 2.256 sum -2.797 9.796 1.565 10.307 Atomic orbital electron populations 1.22293 0.94732 1.02078 1.03561 1.22532 0.94873 0.94247 0.87395 1.21805 1.01385 0.92437 1.03801 1.85907 1.82800 1.16337 1.38719 1.18693 1.05052 0.82357 0.95762 1.20655 1.05739 0.94965 0.97968 1.20852 1.09066 0.93634 0.98566 1.17870 0.92066 0.94243 0.90989 1.19669 1.13361 0.92458 1.27624 0.90968 1.26659 0.93278 1.05445 0.92646 1.69891 1.08667 1.39716 1.28363 0.85183 0.79207 0.76426 0.79015 1.18278 1.19279 1.19014 1.21197 1.03954 0.91472 0.98310 1.18445 1.03190 0.92675 0.94118 1.19693 0.96173 0.96621 0.93683 1.23144 0.97193 1.00829 1.00221 1.20854 0.94789 0.99743 0.87664 1.61158 1.17114 1.09778 1.42150 1.22123 0.97136 0.91417 0.95926 1.21112 0.98375 1.02039 0.93272 0.89005 0.93830 0.91761 0.92425 0.92732 0.88402 0.91517 0.85614 0.88058 0.90574 0.87472 0.90148 0.89998 0.88478 0.83630 0.91550 0.88075 0.90591 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 9.18 71.98 0.66 -3.67 16 2 C 0.07 1.95 2.84 30.59 0.09 2.04 16 3 C -0.14 -3.07 9.56 71.98 0.69 -2.38 16 4 O -0.32 -12.51 9.21 -88.98 -0.82 -13.33 16 5 C 0.03 1.16 6.64 23.05 0.15 1.32 16 6 C -0.17 -7.85 8.19 22.06 0.18 -7.67 16 7 C -0.20 -10.13 9.72 22.51 0.22 -9.91 16 8 C 0.05 2.79 5.55 -21.31 -0.12 2.67 16 9 C -0.50 -27.72 9.04 23.40 0.21 -27.51 16 10 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 11 C 0.03 1.67 5.21 85.23 0.44 2.11 16 12 N -0.84 -45.41 10.88 21.81 0.24 -45.17 16 13 Si 0.98 39.56 29.58 68.60 2.03 41.59 16 14 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 15 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 16 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 17 C -0.13 -7.02 8.39 22.98 0.19 -6.83 16 18 C -0.08 -4.02 5.12 -20.06 -0.10 -4.12 16 19 C -0.06 -2.49 4.80 -18.01 -0.09 -2.57 16 20 C -0.19 -7.21 9.58 24.97 0.24 -6.97 16 21 C 0.10 2.79 6.74 85.40 0.58 3.37 16 22 N -0.67 -17.53 6.97 -517.81 -3.61 -21.15 16 23 C 0.06 1.74 6.65 86.32 0.57 2.31 16 24 C -0.11 -3.71 5.94 29.81 0.18 -3.53 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.29 6.99 -2.38 -0.02 1.27 16 27 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.06 1.78 6.24 -2.39 -0.01 1.77 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.13 4.82 5.41 -2.91 -0.02 4.80 16 33 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 34 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 35 H 0.11 6.15 6.21 -2.91 -0.02 6.13 16 36 H 0.08 3.31 7.98 -2.91 -0.02 3.29 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.35 8.37 8.77 -89.70 -0.79 7.58 16 40 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -62.72 346.44 2.15 -60.57 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.22 Total: 38.84 kcal Atomic # 6 Polarization: -65.45 SS G_CDS: 4.10 Total: -61.35 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -3.37 Total: -66.32 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.82 Total: -13.33 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -62.72 2.15 -60.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592987824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.418 kcal (2) G-P(sol) polarization free energy of solvation -62.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds