Wall clock time and date at job start Tue Mar 31 2020 07:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.50399 * 2 1 4 4 C 1.53120 * 109.53329 * 120.09905 * 2 1 3 5 5 C 1.53123 * 109.15663 * 177.61267 * 4 2 1 6 6 C 1.53036 * 109.28055 * 302.34261 * 5 4 2 7 7 N 1.46833 * 109.51597 * 59.18302 * 6 5 4 8 8 C 1.46894 * 110.98786 * 174.15460 * 7 6 5 9 9 C 1.52999 * 109.46916 * 291.47153 * 8 7 6 10 10 C 1.53005 * 109.47101 * 179.97438 * 9 8 7 11 11 S 1.81001 * 109.46990 * 179.97438 * 10 9 8 12 12 C 1.76202 * 99.99959 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99750 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00219 * 180.02562 * 12 11 10 15 15 N 1.31627 * 119.99918 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99741 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47768 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46914 * 120.00285 * 16 14 12 19 19 H 1.48502 * 109.47108 * 239.99850 * 16 14 12 20 20 C 1.46850 * 111.20775 * 298.25261 * 7 6 5 21 21 H 1.08997 * 109.45985 * 301.73454 * 20 7 6 22 22 C 1.53002 * 109.46271 * 181.75942 * 20 7 6 23 23 C 1.53007 * 109.46750 * 302.58913 * 22 20 7 24 24 O 1.42892 * 109.46851 * 174.85683 * 23 22 20 25 25 H 1.08993 * 109.47525 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47288 * 300.08019 * 1 2 3 27 27 H 1.09003 * 109.47298 * 60.07422 * 1 2 3 28 28 H 1.09002 * 109.52563 * 297.51966 * 4 2 1 29 29 H 1.09000 * 109.52498 * 57.64903 * 4 2 1 30 30 H 1.08997 * 109.50419 * 62.29039 * 5 4 2 31 31 H 1.09005 * 109.49989 * 182.36330 * 5 4 2 32 32 H 1.08995 * 109.46368 * 179.19362 * 6 5 4 33 33 H 1.08999 * 109.46644 * 299.18070 * 6 5 4 34 34 H 1.08997 * 109.47072 * 51.46824 * 8 7 6 35 35 H 1.08994 * 109.47171 * 171.47125 * 8 7 6 36 36 H 1.09005 * 109.47565 * 299.99506 * 9 8 7 37 37 H 1.09003 * 109.47225 * 59.99772 * 9 8 7 38 38 H 1.08997 * 109.47042 * 299.99766 * 10 9 8 39 39 H 1.08994 * 109.47015 * 59.99954 * 10 9 8 40 40 H 0.97000 * 119.99987 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.47005 * 62.58518 * 22 20 7 42 42 H 1.08991 * 109.47073 * 182.59336 * 22 20 7 43 43 H 1.08996 * 109.46790 * 294.86078 * 23 22 20 44 44 H 1.09001 * 109.47304 * 54.85599 * 23 22 20 45 45 H 0.96708 * 114.00076 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0419 -0.7237 1.2485 5 6 3.5720 -0.7710 1.2099 6 6 4.0237 -1.4717 -0.0734 7 7 3.5092 -0.7409 -1.2384 8 6 4.0373 -1.3043 -2.4881 9 6 5.5378 -1.0204 -2.5814 10 6 6.0879 -1.6077 -3.8828 11 16 7.8629 -1.2711 -3.9936 12 6 8.2233 -2.0355 -5.5397 13 1 7.4360 -2.5175 -6.1003 14 6 9.5190 -2.0181 -6.0372 15 7 10.4784 -1.4302 -5.3542 16 14 9.9008 -2.8278 -7.6767 17 1 8.6583 -3.4135 -8.2409 18 1 10.4411 -1.8126 -8.6162 19 1 10.9068 -3.9016 -7.4761 20 6 2.0409 -0.7230 -1.2483 21 1 1.6652 -1.7462 -1.2547 22 6 1.5484 0.0086 -2.4986 23 6 2.1286 1.4242 -2.5229 24 8 1.7671 2.0661 -3.7472 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5151 0.8892 27 1 -0.3634 0.5127 -0.8907 28 1 1.7164 -0.1872 2.1398 29 1 1.6457 -1.7389 1.2693 30 1 3.9680 0.2443 1.2290 31 1 3.9409 -1.3218 2.0752 32 1 5.1127 -1.4943 -0.1108 33 1 3.6386 -2.4913 -0.0854 34 1 3.8698 -2.3812 -2.5004 35 1 3.5276 -0.8476 -3.3364 36 1 5.7053 0.0567 -2.5692 37 1 6.0475 -1.4770 -1.7330 38 1 5.9205 -2.6847 -3.8946 39 1 5.5783 -1.1514 -4.7313 40 1 11.3840 -1.4184 -5.7017 41 1 1.8729 -0.5323 -3.3875 42 1 0.4599 0.0624 -2.4830 43 1 1.7316 1.9940 -1.6828 44 1 3.2147 1.3731 -2.4463 45 1 2.1016 2.9696 -3.8314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595695335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:08 Heat of formation + Delta-G solvation = -77.070619 kcal Electronic energy + Delta-G solvation = -21374.516316 eV Core-core repulsion = 18323.918326 eV Total energy + Delta-G solvation = -3050.597991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05466 -36.76077 -35.40763 -33.46288 -32.42949 -32.12436 -29.28907 -26.52143 -26.23683 -25.41300 -23.83353 -22.48913 -21.14024 -20.39327 -19.25507 -17.47916 -17.38753 -16.19849 -15.66171 -15.13874 -15.00440 -14.78314 -14.45673 -14.31603 -13.93207 -13.86540 -13.36604 -13.07082 -12.95024 -12.65293 -12.26530 -12.10763 -11.92751 -11.84121 -11.55406 -11.46192 -11.21026 -11.06143 -10.96190 -10.78373 -10.72439 -10.62675 -10.47419 -10.24515 -10.02467 -9.81388 -9.47735 -9.04176 -8.28870 -8.25444 -6.49471 -6.20541 -3.90134 3.22531 3.24003 3.31605 3.54935 3.86895 4.16931 4.25200 4.51782 4.56319 4.70832 4.93131 5.05664 5.15471 5.15785 5.18117 5.28557 5.32932 5.35363 5.39697 5.45331 5.47090 5.54662 5.60455 5.64678 5.69841 5.74951 5.77508 5.87163 5.90966 5.94334 5.98575 6.01631 6.04710 6.11040 6.26276 6.27719 6.40611 6.64053 6.80335 7.13663 7.14828 7.62546 7.63418 8.39534 9.26022 10.87734 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.003290 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.917241 B = 8509.308879 C = 9192.299148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.080 0.920 4 C -0.116 4.116 5 C -0.117 4.117 6 C 0.052 3.948 7 N -0.532 5.532 8 C 0.052 3.948 9 C -0.090 4.090 10 C -0.112 4.112 11 S -0.133 6.133 12 C -0.515 4.515 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.093 3.907 21 H 0.043 0.957 22 C -0.118 4.118 23 C 0.079 3.921 24 O -0.582 6.582 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.266 0.734 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.292 3.617 12.343 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.076 4.076 7 N -0.257 5.257 8 C -0.077 4.077 9 C -0.129 4.129 10 C -0.262 4.262 11 S 0.095 5.905 12 C -0.663 4.663 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.506 5.506 16 Si 0.744 3.256 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.015 4.015 21 H 0.061 0.939 22 C -0.156 4.156 23 C 0.001 3.999 24 O -0.387 6.387 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -18.536 4.101 12.997 23.007 hybrid contribution -0.468 -1.548 -1.821 2.436 sum -19.004 2.553 11.176 22.194 Atomic orbital electron populations 1.21895 0.95132 1.01809 1.01894 1.21230 0.94995 1.00433 0.93848 0.90152 1.21648 0.95921 1.00286 0.97461 1.21587 0.95403 1.01727 0.96754 1.22145 1.00846 0.94616 0.89968 1.61933 1.06605 1.54512 1.02614 1.22321 0.96552 0.97116 0.91708 1.21252 0.92821 1.01879 0.96972 1.23233 1.02101 1.01899 0.98926 1.84605 1.00061 1.75624 1.30198 1.22741 0.97101 1.41084 1.05361 0.90961 1.25013 0.95269 0.95361 0.98194 1.70034 1.01241 1.41460 1.37842 0.86121 0.78430 0.78939 0.82080 1.19612 1.20566 1.20611 1.21566 0.87946 0.97552 0.94450 0.93911 1.21678 1.00732 0.95398 0.97775 1.22186 0.99958 0.92644 0.85077 1.86427 1.79578 1.32311 1.40399 0.92829 0.92582 0.92175 0.91955 0.92416 0.91035 0.91661 0.89874 0.95182 0.95070 0.90096 0.90960 0.91781 0.92446 0.92170 0.92406 0.90837 0.90932 0.94116 0.91651 0.77535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.87 37.16 0.33 -0.78 16 2 C -0.09 -0.75 2.13 -90.54 -0.19 -0.95 16 3 H 0.08 0.75 6.58 -51.93 -0.34 0.41 16 4 C -0.12 -0.96 5.29 -26.61 -0.14 -1.10 16 5 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 6 C 0.05 0.58 5.30 -3.84 -0.02 0.56 16 7 N -0.53 -6.30 3.56 -226.71 -0.81 -7.11 16 8 C 0.05 0.71 4.43 -3.83 -0.02 0.70 16 9 C -0.09 -1.50 5.20 -26.73 -0.14 -1.64 16 10 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 11 S -0.13 -3.53 21.44 -107.50 -2.30 -5.84 16 12 C -0.51 -14.98 9.50 30.94 0.29 -14.69 16 13 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 16 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.09 0.96 1.65 -67.72 -0.11 0.85 16 21 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 22 C -0.12 -1.28 4.53 -26.73 -0.12 -1.40 16 23 C 0.08 0.87 6.40 37.16 0.24 1.10 16 24 O -0.58 -6.83 13.66 -35.23 -0.48 -7.31 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 6.39 -51.93 -0.33 0.12 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.01 6.33 -51.93 -0.33 0.68 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 35 H 0.08 1.14 5.51 -51.93 -0.29 0.85 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.07 6.52 -51.93 -0.34 0.73 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 0.89 6.21 -51.93 -0.32 0.57 16 42 H 0.07 0.72 6.32 -51.93 -0.33 0.40 16 43 H 0.04 0.39 6.75 -51.93 -0.35 0.04 16 44 H 0.07 0.81 7.13 -51.93 -0.37 0.44 16 45 H 0.38 2.89 9.12 45.56 0.42 3.31 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -31.81 353.94 -9.68 -41.49 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.20 Total: 0.93 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 0.07 Total: -18.77 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: -0.07 Total: -32.62 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.48 Total: -7.31 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.81 -9.68 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595695335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.583 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds