Wall clock time and date at job start Tue Mar 31 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.50399 * 2 1 4 4 C 1.53120 * 109.53329 * 120.09905 * 2 1 3 5 5 C 1.53123 * 109.15663 * 177.61267 * 4 2 1 6 6 C 1.53036 * 109.28055 * 302.34261 * 5 4 2 7 7 N 1.46833 * 109.51597 * 59.18302 * 6 5 4 8 8 C 1.46894 * 110.98786 * 174.15460 * 7 6 5 9 9 C 1.52999 * 109.46916 * 291.47153 * 8 7 6 10 10 C 1.53005 * 109.47101 * 179.97438 * 9 8 7 11 11 S 1.81001 * 109.46990 * 179.97438 * 10 9 8 12 12 C 1.76202 * 99.99959 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99750 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00219 * 180.02562 * 12 11 10 15 15 N 1.31627 * 119.99918 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99741 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47768 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46914 * 120.00285 * 16 14 12 19 19 H 1.48502 * 109.47108 * 239.99850 * 16 14 12 20 20 C 1.46850 * 111.20775 * 298.25261 * 7 6 5 21 21 H 1.08997 * 109.45985 * 301.73454 * 20 7 6 22 22 C 1.53002 * 109.46271 * 181.75942 * 20 7 6 23 23 C 1.53007 * 109.46750 * 302.58913 * 22 20 7 24 24 O 1.42892 * 109.46851 * 174.85683 * 23 22 20 25 25 H 1.08993 * 109.47525 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47288 * 300.08019 * 1 2 3 27 27 H 1.09003 * 109.47298 * 60.07422 * 1 2 3 28 28 H 1.09002 * 109.52563 * 297.51966 * 4 2 1 29 29 H 1.09000 * 109.52498 * 57.64903 * 4 2 1 30 30 H 1.08997 * 109.50419 * 62.29039 * 5 4 2 31 31 H 1.09005 * 109.49989 * 182.36330 * 5 4 2 32 32 H 1.08995 * 109.46368 * 179.19362 * 6 5 4 33 33 H 1.08999 * 109.46644 * 299.18070 * 6 5 4 34 34 H 1.08997 * 109.47072 * 51.46824 * 8 7 6 35 35 H 1.08994 * 109.47171 * 171.47125 * 8 7 6 36 36 H 1.09005 * 109.47565 * 299.99506 * 9 8 7 37 37 H 1.09003 * 109.47225 * 59.99772 * 9 8 7 38 38 H 1.08997 * 109.47042 * 299.99766 * 10 9 8 39 39 H 1.08994 * 109.47015 * 59.99954 * 10 9 8 40 40 H 0.97000 * 119.99987 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.47005 * 62.58518 * 22 20 7 42 42 H 1.08991 * 109.47073 * 182.59336 * 22 20 7 43 43 H 1.08996 * 109.46790 * 294.86078 * 23 22 20 44 44 H 1.09001 * 109.47304 * 54.85599 * 23 22 20 45 45 H 0.96708 * 114.00076 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0419 -0.7237 1.2485 5 6 3.5720 -0.7710 1.2099 6 6 4.0237 -1.4717 -0.0734 7 7 3.5092 -0.7409 -1.2384 8 6 4.0373 -1.3043 -2.4881 9 6 5.5378 -1.0204 -2.5814 10 6 6.0879 -1.6077 -3.8828 11 16 7.8629 -1.2711 -3.9936 12 6 8.2233 -2.0355 -5.5397 13 1 7.4360 -2.5175 -6.1003 14 6 9.5190 -2.0181 -6.0372 15 7 10.4784 -1.4302 -5.3542 16 14 9.9008 -2.8278 -7.6767 17 1 8.6583 -3.4135 -8.2409 18 1 10.4411 -1.8126 -8.6162 19 1 10.9068 -3.9016 -7.4761 20 6 2.0409 -0.7230 -1.2483 21 1 1.6652 -1.7462 -1.2547 22 6 1.5484 0.0086 -2.4986 23 6 2.1286 1.4242 -2.5229 24 8 1.7671 2.0661 -3.7472 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5151 0.8892 27 1 -0.3634 0.5127 -0.8907 28 1 1.7164 -0.1872 2.1398 29 1 1.6457 -1.7389 1.2693 30 1 3.9680 0.2443 1.2290 31 1 3.9409 -1.3218 2.0752 32 1 5.1127 -1.4943 -0.1108 33 1 3.6386 -2.4913 -0.0854 34 1 3.8698 -2.3812 -2.5004 35 1 3.5276 -0.8476 -3.3364 36 1 5.7053 0.0567 -2.5692 37 1 6.0475 -1.4770 -1.7330 38 1 5.9205 -2.6847 -3.8946 39 1 5.5783 -1.1514 -4.7313 40 1 11.3840 -1.4184 -5.7017 41 1 1.8729 -0.5323 -3.3875 42 1 0.4599 0.0624 -2.4830 43 1 1.7316 1.9940 -1.6828 44 1 3.2147 1.3731 -2.4463 45 1 2.1016 2.9696 -3.8314 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595695335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:07 Heat of formation + Delta-G solvation = -97.804931 kcal Electronic energy + Delta-G solvation = -21375.415423 eV Core-core repulsion = 18323.918326 eV Total energy + Delta-G solvation = -3051.497098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92119 -37.64201 -36.44972 -34.61793 -34.27882 -33.35180 -30.13908 -27.95833 -27.25328 -27.11462 -24.74718 -23.61658 -21.93576 -21.56338 -20.07721 -19.54443 -18.30375 -17.16111 -16.90774 -16.77516 -16.16226 -15.93719 -15.89518 -15.46113 -15.05637 -14.72535 -14.62545 -14.31056 -13.99241 -13.54002 -13.43802 -13.25715 -13.20715 -12.94854 -12.88118 -12.76967 -12.56896 -12.42380 -12.27721 -12.20617 -11.76782 -11.68644 -11.48320 -11.38447 -11.16620 -11.03390 -10.93606 -10.67135 -10.32608 -9.24693 -8.67254 -8.38365 -6.14449 1.30703 1.37416 1.48464 1.73490 2.27165 2.84513 2.95760 3.31893 3.37562 3.75528 3.81809 3.87957 4.05886 4.10838 4.20412 4.31573 4.34972 4.38234 4.43737 4.46782 4.55037 4.65458 4.66005 4.72370 4.73864 4.78956 4.84413 4.89462 4.97984 5.03589 5.11913 5.14676 5.16314 5.20477 5.26843 5.30899 5.38019 5.38992 5.45522 5.57020 6.13192 6.17450 6.21619 6.92688 7.03929 8.71345 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.003290 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.917241 B = 8509.308879 C = 9192.299148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.113 4.113 6 C 0.049 3.951 7 N -0.534 5.534 8 C 0.064 3.936 9 C -0.077 4.077 10 C -0.088 4.088 11 S -0.194 6.194 12 C -0.539 4.539 13 H 0.071 0.929 14 C 0.015 3.985 15 N -0.907 5.907 16 Si 0.994 3.006 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.270 1.270 20 C 0.096 3.904 21 H 0.042 0.958 22 C -0.117 4.117 23 C 0.082 3.918 24 O -0.600 6.600 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.272 0.728 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.894 3.336 12.604 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.078 4.078 7 N -0.259 5.259 8 C -0.065 4.065 9 C -0.116 4.116 10 C -0.237 4.237 11 S 0.035 5.965 12 C -0.687 4.687 13 H 0.089 0.911 14 C -0.190 4.190 15 N -0.543 5.543 16 Si 0.816 3.184 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.012 4.012 21 H 0.060 0.940 22 C -0.154 4.154 23 C 0.005 3.995 24 O -0.408 6.408 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -20.145 3.836 13.272 24.427 hybrid contribution -0.018 -1.424 -1.850 2.334 sum -20.162 2.413 11.422 23.298 Atomic orbital electron populations 1.21861 0.93836 1.02176 1.02443 1.21210 0.95972 0.99891 0.93049 0.90557 1.21638 0.94919 1.00615 0.97802 1.21564 0.96311 1.01252 0.95937 1.22189 1.00037 0.94945 0.90662 1.61905 1.07821 1.54346 1.01840 1.22074 0.94229 0.97193 0.93003 1.21114 0.94811 1.00969 0.94669 1.23153 0.97367 1.02175 1.01008 1.84596 1.05759 1.76088 1.30071 1.23072 0.97720 1.41664 1.06206 0.91122 1.26066 0.94861 0.95700 1.02323 1.70158 1.01814 1.42504 1.39850 0.84966 0.78508 0.78070 0.76824 1.18772 1.19570 1.19565 1.21609 0.86607 0.97711 0.95275 0.94040 1.21671 1.01376 0.95146 0.97230 1.22146 0.98932 0.93007 0.85420 1.86386 1.79845 1.33742 1.40848 0.92558 0.91388 0.92297 0.90447 0.92158 0.91577 0.90487 0.91302 0.95131 0.95022 0.90229 0.91685 0.91890 0.92290 0.92261 0.91930 0.92513 0.89843 0.92527 0.93373 0.75708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.87 71.98 0.64 -1.14 16 2 C -0.08 -1.26 2.13 -10.74 -0.02 -1.28 16 3 H 0.08 1.26 6.58 -2.39 -0.02 1.24 16 4 C -0.11 -1.59 5.29 30.68 0.16 -1.43 16 5 C -0.11 -1.90 6.09 30.65 0.19 -1.72 16 6 C 0.05 1.06 5.30 86.33 0.46 1.52 16 7 N -0.53 -12.24 3.56 -871.19 -3.10 -15.34 16 8 C 0.06 1.75 4.43 86.30 0.38 2.13 16 9 C -0.08 -2.57 5.20 30.60 0.16 -2.41 16 10 C -0.09 -3.65 5.67 71.98 0.41 -3.25 16 11 S -0.19 -10.56 21.44 -56.49 -1.21 -11.77 16 12 C -0.54 -31.82 9.50 67.95 0.65 -31.17 16 13 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 14 C 0.02 0.89 5.49 84.86 0.47 1.36 16 15 N -0.91 -55.37 13.22 21.65 0.29 -55.09 16 16 Si 0.99 44.62 29.55 68.60 2.03 46.64 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 C 0.10 1.85 1.65 44.94 0.07 1.92 16 21 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 22 C -0.12 -2.38 4.53 30.60 0.14 -2.24 16 23 C 0.08 1.72 6.40 71.98 0.46 2.18 16 24 O -0.60 -13.52 13.66 -148.98 -2.03 -15.55 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.74 6.39 -2.39 -0.02 0.73 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.67 6.33 -2.39 -0.02 1.65 16 33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.03 0.86 8.10 -2.39 -0.02 0.84 16 35 H 0.08 2.21 5.51 -2.39 -0.01 2.20 16 36 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.06 2.13 6.52 -2.39 -0.02 2.11 16 38 H 0.06 2.43 8.14 -2.40 -0.02 2.41 16 39 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.06 1.35 6.21 -2.39 -0.01 1.33 16 42 H 0.08 1.52 6.32 -2.39 -0.02 1.51 16 43 H 0.06 1.00 6.75 -2.39 -0.02 0.98 16 44 H 0.05 1.17 7.13 -2.39 -0.02 1.15 16 45 H 0.39 5.66 9.12 -74.05 -0.68 4.98 16 Total: -1.00 -68.41 353.94 0.40 -68.00 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.28 Total: 18.62 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 4.16 Total: -35.52 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -2.82 Total: -70.42 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -2.03 Total: -15.55 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.21 Total: -11.77 kcal Total: -68.41 0.40 -68.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595695335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.804 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds