Wall clock time and date at job start Tue Mar 31 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46782 * 2 1 4 4 C 1.52999 * 109.47113 * 119.99547 * 2 1 3 5 5 C 1.52995 * 109.47291 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46563 * 299.99791 * 5 4 2 7 7 C 1.52999 * 109.47147 * 60.00120 * 6 5 4 8 8 H 1.08999 * 109.47109 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47094 * 59.99905 * 7 6 5 10 10 C 1.34774 * 120.00238 * 85.00016 * 9 7 6 11 11 O 1.21609 * 119.99714 * 359.97438 * 10 9 7 12 12 C 1.47430 * 120.00184 * 180.02562 * 10 9 7 13 13 C 1.39221 * 120.28395 * 354.02585 * 12 10 9 14 14 C 1.38215 * 120.09455 * 180.02562 * 13 12 10 15 15 C 1.38829 * 120.67537 * 359.95559 * 14 13 12 16 16 C 1.37590 * 120.57128 * 0.04906 * 15 14 13 17 17 C 1.40711 * 119.88079 * 359.97438 * 16 15 14 18 18 C 1.40893 * 120.32635 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00221 * 143.86386 * 18 17 16 20 20 C 1.40274 * 119.99957 * 323.85664 * 18 17 16 21 21 N 1.30636 * 120.00014 * 350.02893 * 20 18 17 22 22 Si 1.86801 * 120.00066 * 170.02769 * 20 18 17 23 23 H 1.48504 * 109.46979 * 60.00000 * 22 20 18 24 24 H 1.48500 * 109.47275 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46809 * 300.00301 * 22 20 18 26 26 C 1.52991 * 109.47252 * 239.99765 * 2 1 3 27 27 H 1.09003 * 109.47677 * 300.00574 * 1 2 3 28 28 H 1.08998 * 109.47072 * 60.00644 * 1 2 3 29 29 H 1.09000 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47289 * 59.99842 * 4 2 1 31 31 H 1.09009 * 109.47112 * 300.00228 * 4 2 1 32 32 H 1.08998 * 109.47749 * 179.97438 * 5 4 2 33 33 H 1.08998 * 109.47609 * 59.99393 * 5 4 2 34 34 H 1.08996 * 109.47261 * 299.99770 * 6 5 4 35 35 H 1.09006 * 109.46416 * 179.97438 * 6 5 4 36 36 H 0.96999 * 119.99789 * 264.99714 * 9 7 6 37 37 H 1.08006 * 119.95448 * 359.97438 * 13 12 10 38 38 H 1.08008 * 119.66343 * 179.97438 * 14 13 12 39 39 H 1.08003 * 119.71369 * 180.02562 * 15 14 13 40 40 H 1.07996 * 120.06006 * 180.24630 * 16 15 14 41 41 H 0.96997 * 120.00068 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47416 * 59.99801 * 26 2 1 43 43 H 1.09005 * 109.47114 * 299.99405 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5699 -0.7206 1.2497 6 6 4.0804 -1.4417 0.0004 7 6 3.5704 -0.7206 -1.2489 8 1 3.9344 -1.2340 -2.1388 9 7 4.0583 0.6608 -1.2487 10 6 5.2803 0.9440 -1.7418 11 8 5.9780 0.0527 -2.1863 12 6 5.7715 2.3341 -1.7411 13 6 4.9338 3.3745 -1.3488 14 6 5.3982 4.6763 -1.3501 15 6 6.6994 4.9637 -1.7395 16 6 7.5508 3.9568 -2.1325 17 6 7.1026 2.6230 -2.1406 18 6 7.9666 1.5845 -2.5408 19 1 7.9174 0.6226 -2.0523 20 6 8.8907 1.8000 -3.5739 21 7 8.8232 2.8876 -4.2944 22 14 10.2180 0.5317 -3.9193 23 1 9.5845 -0.7650 -4.2693 24 1 11.0601 0.9924 -5.0524 25 1 11.0641 0.3592 -2.7112 26 6 2.0400 -0.7213 -1.2491 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6767 -1.7488 1.2494 31 1 1.6766 -0.2072 2.1393 32 1 3.9333 -1.2339 2.1399 33 1 3.9330 0.3071 1.2497 34 1 3.7174 -2.4694 0.0003 35 1 5.1704 -1.4409 0.0005 36 1 3.5019 1.3717 -0.8938 37 1 3.9193 3.1643 -1.0437 38 1 4.7422 5.4782 -1.0448 39 1 7.0463 5.9865 -1.7343 40 1 8.5626 4.1892 -2.4300 41 1 9.4620 3.0364 -5.0090 42 1 1.6767 -0.2075 -2.1391 43 1 1.6767 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600989113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:00 Heat of formation + Delta-G solvation = -60.396903 kcal Electronic energy + Delta-G solvation = -23166.250411 eV Core-core repulsion = 19980.931496 eV Total energy + Delta-G solvation = -3185.318915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16362 -39.57717 -38.23195 -35.65911 -34.77830 -33.10535 -31.95256 -31.56618 -30.15329 -27.27320 -27.22776 -24.38632 -23.36146 -22.76727 -22.10984 -21.36682 -19.89100 -19.29945 -18.10192 -17.13348 -16.68057 -16.39366 -16.00700 -15.75765 -15.62220 -15.08682 -14.97161 -14.60404 -14.48352 -14.22916 -13.97097 -13.48771 -13.29034 -13.09867 -13.03754 -12.85926 -12.81631 -12.67318 -12.48639 -12.34337 -12.28713 -11.91364 -11.83381 -11.48038 -11.38194 -11.12780 -11.05255 -10.92697 -10.23382 -9.84068 -9.38551 -9.20889 -8.66860 -6.34839 0.53542 1.01657 1.32116 1.43701 1.49793 2.21032 2.38989 2.54511 2.80282 3.71269 3.77574 3.82971 3.86125 4.20537 4.27601 4.32128 4.36148 4.53288 4.54833 4.58620 4.60772 4.75137 4.80169 4.87594 4.90607 5.02535 5.06149 5.08517 5.13857 5.19117 5.24584 5.30608 5.34667 5.41744 5.45216 5.46441 5.59356 5.61910 5.80512 5.84499 6.05677 6.10813 6.34763 6.65247 6.83116 6.93284 7.03791 7.73112 8.32008 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.005033 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.783360 B = 5562.068805 C = 6567.461754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.062 0.938 4 C -0.105 4.105 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.144 3.856 8 H 0.053 0.947 9 N -0.718 5.718 10 C 0.559 3.441 11 O -0.580 6.580 12 C -0.278 4.278 13 C -0.055 4.055 14 C -0.234 4.234 15 C -0.092 4.092 16 C -0.176 4.176 17 C 0.117 3.883 18 C -0.459 4.459 19 H 0.077 0.923 20 C 0.033 3.967 21 N -0.826 5.826 22 Si 0.977 3.023 23 H -0.275 1.275 24 H -0.259 1.259 25 H -0.257 1.257 26 C -0.111 4.111 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.029 0.971 36 H 0.402 0.598 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.288 0.712 42 H 0.066 0.934 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.128 -3.918 8.445 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.142 4.142 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.039 3.961 8 H 0.072 0.928 9 N -0.373 5.373 10 C 0.352 3.648 11 O -0.461 6.461 12 C -0.283 4.283 13 C -0.074 4.074 14 C -0.253 4.253 15 C -0.111 4.111 16 C -0.195 4.195 17 C 0.113 3.887 18 C -0.488 4.488 19 H 0.095 0.905 20 C -0.181 4.181 21 N -0.453 5.453 22 Si 0.798 3.202 23 H -0.200 1.200 24 H -0.183 1.183 25 H -0.181 1.181 26 C -0.148 4.148 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.239 0.761 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.547 -4.443 7.926 16.313 hybrid contribution 0.921 -0.100 -0.464 1.036 sum -12.626 -4.543 7.462 15.354 Atomic orbital electron populations 1.21776 0.93511 1.02439 1.02124 1.21135 0.96652 0.99082 0.94280 0.92007 1.21561 0.93637 1.01402 0.97622 1.21462 0.96996 1.00055 0.96759 1.21858 0.99206 1.00047 0.95328 1.20917 0.95259 0.82242 0.97651 0.92849 1.45902 1.17163 1.09862 1.64360 1.18441 0.81158 0.88745 0.76479 1.90652 1.57322 1.49548 1.48615 1.19922 0.95758 0.92693 1.19901 1.21047 0.97774 0.92496 0.96091 1.20804 0.96729 0.96247 1.11517 1.21176 0.94489 0.98165 0.97239 1.21240 0.99505 0.93200 1.05555 1.17850 0.90404 0.93310 0.87117 1.19981 1.13999 0.99262 1.15557 0.90482 1.26739 0.98771 0.97935 0.94704 1.69735 1.33508 1.26407 1.15644 0.85345 0.77487 0.78327 0.79032 1.19996 1.18287 1.18145 1.21839 0.91403 1.02788 0.98803 0.91893 0.92610 0.91873 0.90756 0.90862 0.91571 0.93479 0.89685 0.95232 0.76053 0.85299 0.84865 0.86143 0.88600 0.90106 0.91500 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.09 -1.62 2.55 -10.80 -0.03 -1.64 16 3 H 0.06 1.18 6.50 -2.38 -0.02 1.16 16 4 C -0.10 -1.78 5.20 30.59 0.16 -1.62 16 5 C -0.12 -2.67 5.77 30.60 0.18 -2.49 16 6 C -0.13 -3.53 5.60 30.60 0.17 -3.36 16 7 C 0.14 4.32 2.78 45.00 0.13 4.45 16 8 H 0.05 1.92 7.57 -2.39 -0.02 1.91 16 9 N -0.72 -25.20 4.18 -445.73 -1.86 -27.07 16 10 C 0.56 26.71 7.68 86.67 0.67 27.37 16 11 O -0.58 -32.51 13.30 -4.06 -0.05 -32.56 16 12 C -0.28 -13.86 5.92 -19.70 -0.12 -13.98 16 13 C -0.06 -2.26 9.51 22.50 0.21 -2.05 16 14 C -0.23 -9.22 10.03 22.41 0.22 -8.99 16 15 C -0.09 -4.04 10.01 22.26 0.22 -3.82 16 16 C -0.18 -9.21 8.61 22.72 0.20 -9.02 16 17 C 0.12 6.58 5.47 -21.11 -0.12 6.47 16 18 C -0.46 -27.12 7.59 23.42 0.18 -26.95 16 19 H 0.08 4.80 6.05 -2.91 -0.02 4.78 16 20 C 0.03 1.80 5.23 85.37 0.45 2.25 16 21 N -0.83 -45.42 11.33 21.88 0.25 -45.17 16 22 Si 0.98 42.88 29.57 68.60 2.03 44.91 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 C -0.11 -2.29 4.89 30.60 0.15 -2.14 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.40 11.90 4.93 -92.71 -0.46 11.45 16 37 H 0.13 4.10 6.44 -2.91 -0.02 4.08 16 38 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.10 5.25 6.79 -2.91 -0.02 5.23 16 41 H 0.29 14.36 8.29 -92.71 -0.77 13.59 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -68.72 337.48 4.24 -64.48 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.55 Total: 32.16 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 3.33 Total: -36.75 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -1.62 Total: -72.23 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.05 Total: -32.56 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -68.72 4.24 -64.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600989113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.083 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds