Wall clock time and date at job start Tue Mar 31 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.52621 * 2 1 4 4 C 1.53044 * 109.49968 * 120.07831 * 2 1 3 5 5 C 1.53043 * 109.54017 * 181.31430 * 4 2 1 6 6 C 1.53185 * 109.31301 * 298.63730 * 5 4 2 7 7 N 1.46930 * 108.77974 * 54.63366 * 6 5 4 8 8 C 1.34770 * 120.63255 * 126.36363 * 7 6 5 9 9 O 1.21283 * 119.99778 * 179.97438 * 8 7 6 10 10 C 1.50701 * 120.00238 * 0.02562 * 8 7 6 11 11 H 1.08993 * 109.47103 * 59.99200 * 10 8 7 12 12 C 1.50706 * 109.46640 * 299.99600 * 10 8 7 13 13 H 1.08002 * 119.99877 * 335.15758 * 12 10 8 14 14 C 1.37878 * 119.99792 * 155.16654 * 12 10 8 15 15 N 1.31507 * 119.99988 * 354.81972 * 14 12 10 16 16 Si 1.86797 * 119.99715 * 174.82368 * 14 12 10 17 17 H 1.48500 * 109.47470 * 269.99894 * 16 14 12 18 18 H 1.48507 * 109.47395 * 29.99742 * 16 14 12 19 19 H 1.48501 * 109.47413 * 149.99718 * 16 14 12 20 20 C 1.50697 * 109.47125 * 179.97438 * 10 8 7 21 21 C 1.38236 * 120.00172 * 66.23065 * 20 10 8 22 22 C 1.38232 * 120.00075 * 179.80837 * 21 20 10 23 23 C 1.38234 * 120.00126 * 0.41535 * 22 21 20 24 24 C 1.38241 * 119.99957 * 359.81385 * 23 22 21 25 25 C 1.38236 * 119.99873 * 359.97438 * 24 23 22 26 26 C 1.46930 * 118.73554 * 306.64496 * 7 6 5 27 27 H 1.09006 * 109.46908 * 299.91771 * 1 2 3 28 28 H 1.08995 * 109.47225 * 59.92092 * 1 2 3 29 29 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46176 * 61.29787 * 4 2 1 31 31 H 1.08998 * 109.46069 * 301.33622 * 4 2 1 32 32 H 1.09000 * 109.50004 * 178.68158 * 5 4 2 33 33 H 1.09003 * 109.49747 * 58.58729 * 5 4 2 34 34 H 1.09000 * 109.59045 * 294.84358 * 6 5 4 35 35 H 1.09005 * 109.70465 * 174.49081 * 6 5 4 36 36 H 0.97000 * 120.00107 * 180.02562 * 15 14 12 37 37 H 1.08003 * 119.99802 * 359.97438 * 21 20 10 38 38 H 1.08000 * 120.00074 * 180.20312 * 22 21 20 39 39 H 1.08000 * 120.00238 * 179.78896 * 23 22 21 40 40 H 1.07996 * 120.00312 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00318 * 179.97438 * 25 24 23 42 42 H 1.08993 * 109.58657 * 173.14423 * 26 7 6 43 43 H 1.08998 * 109.58392 * 293.56654 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5709 -0.6950 1.2660 6 6 4.1053 -1.4267 0.0308 7 7 3.5046 -0.8292 -1.1696 8 6 4.2811 -0.3857 -2.1779 9 8 3.7730 0.1052 -3.1637 10 6 5.7806 -0.5006 -2.0809 11 1 6.0585 -1.5493 -1.9761 12 6 6.2668 0.2703 -0.8807 13 1 5.6811 1.0903 -0.4921 14 6 7.4595 -0.0711 -0.2789 15 7 8.1221 -1.1311 -0.6872 16 14 8.1338 0.9720 1.1162 17 1 9.0055 2.0381 0.5606 18 1 7.0077 1.5912 1.8605 19 1 8.9243 0.1160 2.0369 20 6 6.4094 0.0630 -3.3290 21 6 6.3052 1.4133 -3.6063 22 6 6.8854 1.9309 -4.7492 23 6 7.5624 1.0969 -5.6193 24 6 7.6626 -0.2542 -5.3444 25 6 7.0861 -0.7711 -4.1993 26 6 2.0415 -0.7188 -1.2471 27 1 -0.3633 0.5126 0.8908 28 1 -0.3633 0.5150 -0.8892 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6968 -1.7572 1.2354 31 1 1.6582 -0.2244 2.1389 32 1 3.9335 -1.1896 2.1671 33 1 3.9160 0.3389 1.2540 34 1 3.8376 -2.4818 0.0868 35 1 5.1898 -1.3269 -0.0149 36 1 8.9610 -1.3716 -0.2636 37 1 5.7728 2.0642 -2.9286 38 1 6.8068 2.9864 -4.9642 39 1 8.0128 1.5008 -6.5140 40 1 8.1911 -0.9058 -6.0243 41 1 7.1640 -1.8267 -3.9847 42 1 1.7646 -0.1498 -2.1346 43 1 1.6021 -1.7150 -1.2974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155982384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:36 Heat of formation + Delta-G solvation = -42.359221 kcal Electronic energy + Delta-G solvation = -23674.430689 eV Core-core repulsion = 20489.893946 eV Total energy + Delta-G solvation = -3184.536743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25747 -39.69401 -38.29670 -35.76225 -34.38750 -32.83721 -32.57789 -31.53506 -29.43306 -27.39870 -26.60725 -25.17870 -23.21000 -23.07184 -22.41552 -21.03873 -19.76641 -18.63452 -17.81060 -17.43598 -16.85099 -16.31215 -15.92358 -15.71245 -15.59353 -15.26316 -15.11221 -14.53762 -14.34957 -14.08396 -13.99734 -13.88278 -13.41148 -13.32056 -13.20441 -12.97539 -12.79806 -12.77480 -12.54168 -12.20215 -11.95955 -11.90432 -11.71154 -11.67326 -11.42083 -11.25011 -11.21872 -10.64646 -10.31864 -9.55980 -9.40441 -9.25134 -8.19093 -6.26060 0.75905 0.80745 1.40749 1.44915 1.51797 1.91221 2.36126 2.42915 3.09860 3.25422 3.79094 3.93273 4.02528 4.20958 4.25273 4.29396 4.31089 4.42659 4.43992 4.52850 4.58611 4.72389 4.72802 4.86948 4.88384 4.94547 4.95667 4.96900 5.10620 5.15951 5.19880 5.28307 5.35341 5.37653 5.39992 5.44961 5.56080 5.66493 5.78034 5.81323 5.92944 5.95398 6.24448 6.40236 6.64252 6.73989 7.35667 7.49422 8.88800 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.007128 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.455162 B = 3927.008999 C = 5316.537742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 H 0.049 0.951 4 C -0.105 4.105 5 C -0.126 4.126 6 C 0.095 3.905 7 N -0.606 5.606 8 C 0.522 3.478 9 O -0.598 6.598 10 C 0.059 3.941 11 H 0.060 0.940 12 C -0.501 4.501 13 H 0.049 0.951 14 C 0.041 3.959 15 N -0.900 5.900 16 Si 0.942 3.058 17 H -0.286 1.286 18 H -0.263 1.263 19 H -0.278 1.278 20 C -0.036 4.036 21 C -0.111 4.111 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.130 4.130 25 C -0.139 4.139 26 C 0.112 3.888 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.267 0.733 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 -0.487 2.175 8.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 H 0.067 0.933 4 C -0.142 4.142 5 C -0.165 4.165 6 C -0.027 4.027 7 N -0.337 5.337 8 C 0.313 3.687 9 O -0.481 6.481 10 C 0.038 3.962 11 H 0.078 0.922 12 C -0.539 4.539 13 H 0.067 0.933 14 C -0.162 4.162 15 N -0.536 5.536 16 Si 0.768 3.232 17 H -0.212 1.212 18 H -0.187 1.187 19 H -0.203 1.203 20 C -0.037 4.037 21 C -0.129 4.129 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.158 4.158 26 C -0.011 4.011 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.152 0.848 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.325 -0.373 1.723 8.510 hybrid contribution 0.721 0.504 0.717 1.135 sum -7.604 0.131 2.439 7.987 Atomic orbital electron populations 1.21705 0.92418 1.02837 1.02326 1.21380 0.97277 0.98788 0.94761 0.93250 1.21564 0.94239 1.01258 0.97158 1.21806 0.96589 1.00488 0.97581 1.22111 1.01593 0.95633 0.83407 1.48038 1.06375 1.60633 1.18651 1.21470 0.90843 0.75192 0.81178 1.90524 1.76770 1.47610 1.33171 1.17960 0.86443 0.98899 0.92881 0.92170 1.20520 1.06236 1.16012 1.11110 0.93267 1.25426 0.96556 0.95429 0.98739 1.69988 1.15957 1.25024 1.42675 0.85793 0.78814 0.79005 0.79625 1.21243 1.18749 1.20297 1.20136 0.95480 0.93944 0.94180 1.20836 0.99666 0.95127 0.97289 1.21313 0.98940 1.00436 0.94753 1.21262 1.00941 0.93520 1.00417 1.21299 1.00184 0.96277 0.97020 1.21114 1.00082 0.99235 0.95338 1.21611 0.79710 1.00829 0.98904 0.91110 0.92857 0.91263 0.90528 0.90325 0.89597 0.93637 0.91712 0.87744 0.92370 0.88922 0.84772 0.83547 0.84260 0.87612 0.91793 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.20 71.98 0.66 -1.98 16 2 C -0.10 -2.73 2.86 -10.86 -0.03 -2.76 16 3 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.10 -2.48 5.17 30.62 0.16 -2.32 16 5 C -0.13 -3.79 6.08 30.67 0.19 -3.60 16 6 C 0.09 3.41 5.88 86.36 0.51 3.91 16 7 N -0.61 -24.05 2.98 -819.74 -2.44 -26.49 16 8 C 0.52 24.95 6.98 87.66 0.61 25.56 16 9 O -0.60 -31.27 14.84 -3.04 -0.05 -31.32 16 10 C 0.06 2.96 1.51 -13.03 -0.02 2.94 16 11 H 0.06 3.22 7.09 -2.39 -0.02 3.20 16 12 C -0.50 -25.32 5.11 25.60 0.13 -25.19 16 13 H 0.05 2.57 7.81 -2.91 -0.02 2.54 16 14 C 0.04 2.06 5.24 84.66 0.44 2.50 16 15 N -0.90 -47.44 12.93 21.45 0.28 -47.16 16 16 Si 0.94 40.70 29.54 68.60 2.03 42.72 16 17 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 20 C -0.04 -1.80 4.30 -19.87 -0.09 -1.88 16 21 C -0.11 -5.24 8.32 22.27 0.19 -5.05 16 22 C -0.14 -5.38 10.05 22.27 0.22 -5.16 16 23 C -0.14 -5.11 10.05 22.27 0.22 -4.89 16 24 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 25 C -0.14 -6.34 9.67 22.27 0.22 -6.12 16 26 C 0.11 3.65 5.69 86.22 0.49 4.14 16 27 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.10 4.53 4.40 -2.38 -0.01 4.52 16 36 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 37 H 0.09 4.56 7.89 -2.91 -0.02 4.53 16 38 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.11 4.75 7.96 -2.91 -0.02 4.72 16 42 H 0.06 2.35 7.01 -2.39 -0.02 2.33 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -61.94 343.78 4.92 -57.02 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.97 Total: 29.86 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 4.13 Total: -24.63 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -2.16 Total: -73.65 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.05 Total: -31.32 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -61.94 4.92 -57.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155982384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.662 kcal (2) G-P(sol) polarization free energy of solvation -61.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds