Wall clock time and date at job start Tue Mar 31 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99895 * 2 1 4 4 H 1.08991 * 112.89122 * 18.64430 * 3 2 1 5 5 C 1.53961 * 113.65746 * 247.18133 * 3 2 1 6 6 C 1.53946 * 87.29506 * 270.26174 * 5 3 2 7 7 H 1.09000 * 113.75134 * 89.75139 * 6 5 3 8 8 N 1.46500 * 113.66288 * 220.79785 * 6 5 3 9 9 C 1.39688 * 119.99876 * 252.19158 * 8 6 5 10 10 C 1.39343 * 119.95047 * 359.97438 * 9 8 6 11 11 C 1.38475 * 120.42444 * 180.25929 * 10 9 8 12 12 C 1.37697 * 120.32207 * 359.44239 * 11 10 9 13 13 C 1.40745 * 119.89423 * 0.55719 * 12 11 10 14 14 C 1.41408 * 120.21004 * 179.74218 * 13 12 11 15 15 H 1.08001 * 120.00003 * 150.18613 * 14 13 12 16 16 C 1.39927 * 119.99802 * 330.19316 * 14 13 12 17 17 N 1.30835 * 120.00113 * 161.72700 * 16 14 13 18 18 Si 1.86793 * 120.00141 * 341.72515 * 16 14 13 19 19 H 1.48502 * 109.47385 * 95.41431 * 18 16 14 20 20 H 1.48508 * 109.47272 * 215.41445 * 18 16 14 21 21 H 1.48500 * 109.47147 * 335.41403 * 18 16 14 22 22 C 1.38274 * 119.95378 * 179.97438 * 9 8 6 23 23 C 1.52905 * 113.66410 * 149.99780 * 3 2 1 24 24 C 1.52903 * 121.14009 * 215.28824 * 23 3 2 25 25 C 1.53947 * 86.78349 * 100.81834 * 24 23 3 26 26 C 1.52908 * 121.13777 * 323.85204 * 23 3 2 27 27 H 1.09008 * 109.46915 * 60.00183 * 1 2 3 28 28 H 1.08997 * 109.47306 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47753 * 300.00974 * 1 2 3 30 30 H 1.09000 * 113.57516 * 155.65775 * 5 3 2 31 31 H 1.08999 * 113.57920 * 24.86768 * 5 3 2 32 32 H 0.96993 * 120.00165 * 72.18162 * 8 6 5 33 33 H 1.07999 * 119.78450 * 359.97438 * 10 9 8 34 34 H 1.07991 * 119.84051 * 179.72873 * 11 10 9 35 35 H 1.08005 * 120.05079 * 180.28004 * 12 11 10 36 36 H 0.96990 * 120.00020 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.15918 * 359.97438 * 22 9 8 38 38 H 1.09003 * 113.66878 * 215.29610 * 24 23 3 39 39 H 1.09007 * 113.65842 * 346.34278 * 24 23 3 40 40 H 1.09003 * 113.57702 * 270.13237 * 25 24 23 41 41 H 1.09003 * 113.57810 * 139.34266 * 25 24 23 42 42 H 1.09004 * 113.66104 * 13.64699 * 26 23 3 43 43 H 1.09001 * 113.66727 * 144.70795 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3135 2.0797 0.3210 5 6 2.7611 1.6474 -1.2999 6 6 4.0189 1.0485 -0.6448 7 1 4.1416 -0.0195 -0.8251 8 7 5.2398 1.8145 -0.9069 9 6 6.2091 1.3080 -1.7759 10 6 6.0138 0.0738 -2.3925 11 6 6.9706 -0.4401 -3.2516 12 6 8.1212 0.2690 -3.5148 13 6 8.3324 1.5170 -2.8993 14 6 9.5141 2.2484 -3.1607 15 1 9.5014 3.3276 -3.1195 16 6 10.6997 1.5740 -3.4728 17 7 11.6820 2.2128 -4.0548 18 14 10.8800 -0.2385 -3.0586 19 1 10.5292 -1.0555 -4.2480 20 1 12.2835 -0.5185 -2.6622 21 1 9.9706 -0.5826 -1.9361 22 6 7.3609 2.0321 -2.0230 23 6 3.3678 1.3729 0.7003 24 6 3.7832 2.6063 1.5028 25 6 3.4007 1.8084 2.7625 26 6 3.6590 0.5310 1.9431 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3635 0.5140 0.8899 30 1 2.8366 2.7179 -1.4910 31 1 2.4112 1.0860 -2.1661 32 1 5.3751 2.6735 -0.4771 33 1 5.1125 -0.4877 -2.1956 34 1 6.8116 -1.3996 -3.7209 35 1 8.8625 -0.1339 -4.1891 36 1 12.5039 1.7454 -4.2708 37 1 7.5131 2.9890 -1.5460 38 1 4.8470 2.8343 1.4354 39 1 3.1502 3.4762 1.3268 40 1 2.3591 1.9336 3.0584 41 1 4.0958 1.9428 3.5914 42 1 2.9268 -0.2571 2.1191 43 1 4.6879 0.1756 1.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313450021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:53 Heat of formation + Delta-G solvation = 23.153586 kcal Electronic energy + Delta-G solvation = -22668.634279 eV Core-core repulsion = 19486.938384 eV Total energy + Delta-G solvation = -3181.695894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89905 -37.87443 -37.18009 -35.15816 -33.54617 -32.41289 -30.13596 -28.09186 -26.79080 -25.87316 -25.05807 -24.63142 -23.76661 -21.19339 -20.93643 -20.10769 -18.23920 -17.49110 -16.72853 -16.10888 -15.89957 -15.75396 -15.11284 -14.66186 -14.63539 -14.43889 -13.61897 -13.37510 -13.22568 -12.56035 -12.51685 -12.49768 -12.27756 -12.08465 -11.93224 -11.90925 -11.61451 -11.43773 -11.15657 -10.85807 -10.74428 -10.50392 -10.40850 -10.17229 -9.95251 -9.67525 -9.48388 -9.43472 -9.16418 -8.78529 -7.53799 -6.83887 -6.39178 -4.39542 2.75540 2.97048 3.22277 3.32115 3.37544 3.44271 4.10152 4.12059 4.36904 4.49724 4.64574 4.67187 4.69087 4.82776 4.98908 5.04692 5.14098 5.21630 5.36389 5.42151 5.54482 5.58696 5.63305 5.74253 5.79405 5.85279 5.98922 6.04170 6.11645 6.17089 6.28865 6.42271 6.45112 6.64883 6.86149 6.92660 7.04622 7.08881 7.38165 7.64360 7.75923 7.87566 8.05453 8.41731 8.50502 8.57541 8.84086 8.97170 10.19176 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.003782 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.869504 B = 7402.215403 C = 7741.323269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.089 3.911 4 H 0.073 0.927 5 C -0.174 4.174 6 C 0.163 3.837 7 H 0.109 0.891 8 N -0.745 5.745 9 C 0.235 3.765 10 C -0.299 4.299 11 C -0.048 4.048 12 C -0.272 4.272 13 C 0.126 3.874 14 C -0.452 4.452 15 H 0.087 0.913 16 C 0.086 3.914 17 N -0.815 5.815 18 Si 0.915 3.085 19 H -0.272 1.272 20 H -0.295 1.295 21 H -0.244 1.244 22 C -0.278 4.278 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.139 4.139 26 C -0.119 4.119 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.389 0.611 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.386 -2.046 10.291 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.031 3.969 4 H 0.091 0.909 5 C -0.213 4.213 6 C 0.056 3.944 7 H 0.126 0.874 8 N -0.376 5.376 9 C 0.136 3.864 10 C -0.322 4.322 11 C -0.067 4.067 12 C -0.293 4.293 13 C 0.122 3.878 14 C -0.481 4.481 15 H 0.105 0.895 16 C -0.132 4.132 17 N -0.440 5.440 18 Si 0.742 3.258 19 H -0.198 1.198 20 H -0.223 1.223 21 H -0.168 1.168 22 C -0.302 4.302 23 C -0.118 4.118 24 C -0.149 4.149 25 C -0.177 4.177 26 C -0.157 4.157 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.224 0.776 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.118 -2.293 10.169 20.903 hybrid contribution 0.029 -0.171 0.118 0.210 sum -18.089 -2.464 10.287 20.955 Atomic orbital electron populations 1.22799 0.81157 1.02696 0.99846 1.87887 1.19361 1.26381 1.94508 1.22620 0.92817 0.84920 0.96586 0.90881 1.24064 0.97961 1.01896 0.97418 1.21892 0.83166 0.96987 0.92384 0.87381 1.44471 1.18959 1.22807 1.51323 1.17576 0.87634 0.92423 0.88764 1.19956 1.02549 0.98662 1.11028 1.20371 0.93710 0.96961 0.95671 1.20895 0.99701 0.99934 1.08729 1.17437 0.92303 0.90543 0.87488 1.19443 0.92336 0.96081 1.40268 0.89466 1.26130 0.95376 1.00907 0.90806 1.69712 1.05630 1.39684 1.28994 0.86274 0.76535 0.81892 0.81122 1.19824 1.22278 1.16754 1.20401 0.97481 1.02858 1.09440 1.23215 0.95372 0.98718 0.94457 1.22549 1.01922 0.95388 0.95063 1.22831 1.01124 0.97012 0.96724 1.22595 1.02128 0.96518 0.94437 0.94014 0.89612 0.94192 0.89292 0.90752 0.77614 0.88877 0.89101 0.88623 0.90678 0.88638 0.89037 0.91460 0.90663 0.91470 0.90977 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.35 16 2 O -0.36 -4.24 10.20 -35.23 -0.36 -4.60 16 3 C 0.09 0.99 4.17 -26.28 -0.11 0.88 16 4 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 5 C -0.17 -2.21 7.72 -25.75 -0.20 -2.41 16 6 C 0.16 2.38 3.88 -67.48 -0.26 2.11 16 7 H 0.11 1.77 6.12 -51.93 -0.32 1.45 16 8 N -0.74 -12.58 5.42 -51.78 -0.28 -12.86 16 9 C 0.24 5.03 6.64 -83.85 -0.56 4.48 16 10 C -0.30 -6.48 9.27 -39.08 -0.36 -6.84 16 11 C -0.05 -1.10 10.02 -39.69 -0.40 -1.50 16 12 C -0.27 -6.87 7.17 -38.83 -0.28 -7.15 16 13 C 0.13 3.32 5.10 -106.85 -0.55 2.77 16 14 C -0.45 -12.69 9.57 -37.74 -0.36 -13.05 16 15 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 16 C 0.09 2.33 5.40 -17.34 -0.09 2.24 16 17 N -0.82 -22.47 13.93 55.55 0.77 -21.69 16 18 Si 0.91 21.78 24.52 -169.99 -4.17 17.61 16 19 H -0.27 -6.31 6.71 56.52 0.38 -5.93 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.24 -5.99 6.86 56.52 0.39 -5.60 16 22 C -0.28 -6.66 9.63 -38.68 -0.37 -7.03 16 23 C -0.12 -1.37 0.98 -154.72 -0.15 -1.52 16 24 C -0.11 -1.16 7.15 -26.29 -0.19 -1.35 16 25 C -0.14 -1.34 8.08 -25.75 -0.21 -1.55 16 26 C -0.12 -1.37 7.71 -26.28 -0.20 -1.57 16 27 H 0.04 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.39 6.00 7.04 -40.82 -0.29 5.71 16 33 H 0.09 1.83 6.02 -52.49 -0.32 1.51 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.10 2.42 4.73 -52.48 -0.25 2.17 16 36 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 37 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 38 H 0.09 1.02 7.03 -51.93 -0.36 0.65 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.82 7.83 -51.93 -0.41 0.42 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -29.11 340.48 -8.69 -37.80 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.59 Total: 8.74 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -3.19 Total: -30.13 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.49 Total: -34.55 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.36 Total: -4.60 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.17 Total: 17.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.11 -8.69 -37.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313450021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.949 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds