Wall clock time and date at job start Tue Mar 31 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47287 * 2 1 4 4 C 1.42900 * 113.99993 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.85229 * 18.80722 * 4 3 2 6 6 C 1.53776 * 113.61660 * 247.49507 * 4 3 2 7 7 C 1.53779 * 87.08645 * 220.02165 * 6 4 3 8 8 H 1.09002 * 113.61731 * 139.97987 * 7 6 4 9 9 N 1.46904 * 113.69026 * 270.87326 * 7 6 4 10 10 C 1.46893 * 110.99839 * 254.06157 * 9 7 6 11 11 C 1.53005 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47044 * 300.00160 * 11 10 9 13 13 C 1.52997 * 109.47004 * 59.99739 * 11 10 9 14 14 C 1.50698 * 109.47088 * 180.02562 * 11 10 9 15 15 H 1.07998 * 120.00172 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99950 * 179.97438 * 14 11 10 17 17 N 1.31520 * 119.99743 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00247 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.46680 * 90.00140 * 18 16 14 20 20 H 1.48493 * 109.47181 * 210.00437 * 18 16 14 21 21 H 1.48497 * 109.47056 * 330.00449 * 18 16 14 22 22 C 1.53781 * 87.07725 * 25.43495 * 7 6 4 23 23 H 1.08993 * 113.62030 * 89.12104 * 22 7 6 24 24 S 1.81406 * 113.61023 * 219.93894 * 22 7 6 25 25 C 1.81406 * 102.99768 * 184.99888 * 24 22 7 26 26 H 1.08996 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46967 * 300.00104 * 1 2 3 28 28 H 1.09004 * 109.46788 * 60.00417 * 1 2 3 29 29 H 1.09001 * 109.47370 * 239.99547 * 2 1 3 30 30 H 1.09000 * 109.47259 * 119.99719 * 2 1 3 31 31 H 1.09003 * 113.61687 * 105.46997 * 6 4 3 32 32 H 1.09009 * 113.61565 * 334.57345 * 6 4 3 33 33 H 1.00899 * 110.99751 * 18.01770 * 9 7 6 34 34 H 1.09000 * 109.47672 * 299.99901 * 10 9 7 35 35 H 1.09005 * 109.47280 * 60.00449 * 10 9 7 36 36 H 1.08997 * 109.47175 * 59.99534 * 12 11 10 37 37 H 1.08991 * 109.46962 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.46655 * 300.00006 * 12 11 10 39 39 H 1.09004 * 109.47021 * 60.00194 * 13 11 10 40 40 H 1.09004 * 109.47034 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47619 * 300.00297 * 13 11 10 42 42 H 0.96998 * 119.99738 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.46779 * 179.97438 * 25 24 22 44 44 H 1.08995 * 109.46900 * 300.00062 * 25 24 22 45 45 H 1.09002 * 109.46935 * 59.99916 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9281 0.5455 -0.3229 6 6 4.0019 2.0465 1.3024 7 6 4.9897 2.8314 0.4232 8 1 5.1615 3.8524 0.7640 9 7 6.2362 2.1060 0.1436 10 6 7.3532 2.6601 0.9202 11 6 8.6311 1.8810 0.6025 12 6 8.4354 0.4086 0.9698 13 6 8.9412 1.9971 -0.8912 14 6 9.7770 2.4490 1.3997 15 1 9.6105 3.2826 2.0659 16 6 11.0379 1.9045 1.2785 17 7 11.2407 0.8897 0.4668 18 14 12.4584 2.6090 2.2660 19 1 12.5509 1.9059 3.5707 20 1 13.7248 2.4237 1.5129 21 1 12.2288 4.0574 2.4994 22 6 3.9489 2.7251 -0.7039 23 1 3.2305 3.5447 -0.7136 24 16 4.6748 2.4053 -2.3353 25 6 3.2408 2.4878 -3.4432 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 4.4807 1.3051 1.9422 32 1 3.2979 2.6806 1.8414 33 1 6.1274 1.1186 0.3206 34 1 7.4930 3.7089 0.6583 35 1 7.1321 2.5777 1.9844 36 1 7.6065 -0.0025 0.3936 37 1 9.3456 -0.1464 0.7430 38 1 8.2145 0.3259 2.0339 39 1 9.0806 3.0461 -1.1528 40 1 9.8519 1.4425 -1.1174 41 1 8.1124 1.5861 -1.4674 42 1 12.1278 0.5069 0.3812 43 1 3.5632 2.3080 -4.4688 44 1 2.5131 1.7302 -3.1526 45 1 2.7845 3.4753 -3.3739 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459727333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:42 Heat of formation + Delta-G solvation = -29.544060 kcal Electronic energy + Delta-G solvation = -21690.231786 eV Core-core repulsion = 18641.694702 eV Total energy + Delta-G solvation = -3048.537084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72928 -37.19456 -35.80409 -32.57659 -31.14497 -29.92376 -28.74248 -25.82160 -25.52080 -25.17360 -24.45148 -23.21585 -22.94103 -19.34387 -18.55119 -17.23002 -16.55708 -15.79453 -15.71658 -14.96866 -14.81409 -14.37920 -14.19754 -13.72406 -13.50756 -13.25817 -13.08519 -12.86658 -12.73125 -12.60797 -12.49192 -12.05348 -11.81574 -11.77105 -11.22539 -11.13558 -11.00811 -10.79304 -10.60482 -10.56184 -10.38109 -10.14932 -10.01655 -9.86997 -9.35140 -9.34188 -9.04611 -8.59028 -8.25951 -7.74158 -7.29613 -5.88307 -3.98664 1.96814 2.86313 3.32901 3.40140 3.43165 3.60001 4.35269 4.46866 4.51081 4.67875 4.82667 4.89351 4.97422 5.16528 5.20973 5.24377 5.27820 5.36653 5.37215 5.54439 5.60986 5.68123 5.79517 5.82896 5.88003 5.97240 6.06539 6.35270 6.40456 6.74183 6.91258 7.09762 7.14758 7.20114 7.45806 7.52305 7.72263 7.79338 7.86944 7.93684 8.24593 8.39041 8.58872 9.02757 9.66174 11.12067 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.025242 B = 0.003825 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.997682 B = 7319.281653 C = 7802.094656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.378 6.378 4 C 0.078 3.922 5 H 0.099 0.901 6 C -0.183 4.183 7 C 0.099 3.901 8 H 0.094 0.906 9 N -0.656 5.656 10 C 0.077 3.923 11 C 0.070 3.930 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.507 4.507 15 H 0.051 0.949 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.888 3.112 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.081 4.081 23 H 0.106 0.894 24 S -0.178 6.178 25 C -0.148 4.148 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.341 0.659 34 H 0.058 0.942 35 H 0.015 0.985 36 H 0.010 0.990 37 H 0.083 0.917 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.072 0.928 41 H 0.023 0.977 42 H 0.257 0.743 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.962 -0.776 -2.521 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.297 6.297 4 C 0.017 3.983 5 H 0.117 0.883 6 C -0.224 4.224 7 C -0.015 4.015 8 H 0.113 0.887 9 N -0.287 5.287 10 C -0.051 4.051 11 C 0.069 3.931 12 C -0.190 4.190 13 C -0.176 4.176 14 C -0.545 4.545 15 H 0.070 0.930 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.716 3.284 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.211 4.211 23 H 0.124 0.876 24 S 0.051 5.949 25 C -0.317 4.317 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.162 0.838 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.102 0.898 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.691 -0.555 -3.477 18.038 hybrid contribution -0.651 0.113 1.769 1.888 sum -18.343 -0.441 -1.708 18.427 Atomic orbital electron populations 1.21743 0.93995 1.02119 1.02903 1.22498 0.95315 0.84137 1.00216 1.87905 1.20988 1.26269 1.94576 1.24156 0.80612 0.97567 0.95917 0.88339 1.24168 0.99984 1.01084 0.97204 1.22232 0.89070 0.99141 0.91027 0.88744 1.60367 1.01758 1.07109 1.59465 1.22215 0.90915 0.99153 0.92797 1.18085 0.89571 0.91348 0.94050 1.21836 1.00523 0.99825 0.96780 1.21622 1.00716 0.98816 0.96448 1.21106 0.93063 1.15981 1.24390 0.93040 1.24879 0.98412 0.94984 0.95268 1.69840 1.21779 1.23768 1.36864 0.86670 0.82198 0.79457 0.80070 1.20931 1.21325 1.20078 1.25451 1.00626 1.00131 0.94937 0.87564 1.87654 1.12708 1.93813 1.00741 1.23482 1.01348 1.04143 1.02767 0.91218 0.91966 0.92055 0.93292 0.93339 0.90585 0.89076 0.83823 0.92306 0.96683 0.97129 0.89817 0.96322 0.96337 0.90909 0.95757 0.93228 0.88791 0.91246 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.54 6.50 37.16 0.24 0.78 16 3 O -0.38 -4.63 10.35 -35.23 -0.36 -5.00 16 4 C 0.08 0.98 3.66 -25.92 -0.09 0.88 16 5 H 0.10 1.28 7.74 -51.93 -0.40 0.88 16 6 C -0.18 -2.28 7.44 -25.92 -0.19 -2.48 16 7 C 0.10 1.42 4.14 -66.90 -0.28 1.14 16 8 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 9 N -0.66 -11.32 4.77 -105.86 -0.50 -11.83 16 10 C 0.08 1.57 4.44 -3.83 -0.02 1.55 16 11 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 12 C -0.13 -3.08 7.92 37.16 0.29 -2.78 16 13 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 14 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 15 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 16 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 17 N -0.88 -24.51 9.35 55.43 0.52 -23.99 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.08 -1.09 4.07 -25.92 -0.11 -1.19 16 23 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 24 S -0.18 -2.62 21.31 -107.50 -2.29 -4.91 16 25 C -0.15 -1.67 10.76 101.05 1.09 -0.58 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.34 5.88 6.14 -39.29 -0.24 5.64 16 34 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 37 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.96 6.07 -51.93 -0.32 1.65 16 41 H 0.02 0.55 7.60 -51.93 -0.39 0.16 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -27.64 363.87 -9.32 -36.96 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.30 Total: 3.83 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 1.16 Total: -16.69 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.01 Total: -35.82 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.36 Total: -5.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.29 Total: -4.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.64 -9.32 -36.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.415 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds