Wall clock time and date at job start Tue Mar 31 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47181 * 2 1 4 4 C 1.42894 * 114.00288 * 180.02562 * 3 2 1 5 5 H 1.09006 * 112.85161 * 18.80036 * 4 3 2 6 6 C 1.53785 * 113.61553 * 247.49734 * 4 3 2 7 7 C 1.53784 * 87.08095 * 270.88341 * 6 4 3 8 8 H 1.09000 * 113.68886 * 220.00483 * 7 6 4 9 9 N 1.46898 * 113.61583 * 89.11178 * 7 6 4 10 10 C 1.46906 * 110.99888 * 107.50509 * 9 7 6 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46733 * 299.99953 * 11 10 9 13 13 C 1.53005 * 109.47212 * 59.99438 * 11 10 9 14 14 C 1.50696 * 109.47429 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99822 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00339 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47112 * 90.00199 * 18 16 14 20 20 H 1.48499 * 109.47134 * 210.00310 * 18 16 14 21 21 H 1.48498 * 109.47011 * 329.99931 * 18 16 14 22 22 C 1.53781 * 87.08004 * 334.56516 * 7 6 4 23 23 H 1.09007 * 113.61436 * 270.88431 * 22 7 6 24 24 S 1.81401 * 113.61479 * 139.98438 * 22 7 6 25 25 C 1.81402 * 102.99948 * 175.00108 * 24 22 7 26 26 H 1.09003 * 109.47335 * 59.99866 * 1 2 3 27 27 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47015 * 299.99746 * 1 2 3 29 29 H 1.09002 * 109.47015 * 240.00254 * 2 1 3 30 30 H 1.09003 * 109.47335 * 120.00134 * 2 1 3 31 31 H 1.08996 * 113.61866 * 156.33302 * 6 4 3 32 32 H 1.08997 * 113.61220 * 25.43097 * 6 4 3 33 33 H 1.00901 * 111.00121 * 343.55095 * 9 7 6 34 34 H 1.09004 * 109.47040 * 299.99934 * 10 9 7 35 35 H 1.09000 * 109.47033 * 59.99886 * 10 9 7 36 36 H 1.09002 * 109.47288 * 60.00045 * 12 11 10 37 37 H 1.09001 * 109.46630 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47188 * 299.99959 * 12 11 10 39 39 H 1.08996 * 109.46524 * 60.00440 * 13 11 10 40 40 H 1.09001 * 109.46962 * 180.02562 * 13 11 10 41 41 H 1.08992 * 109.47457 * 300.00343 * 13 11 10 42 42 H 0.97000 * 120.00540 * 179.97438 * 17 16 14 43 43 H 1.09007 * 109.47229 * 59.99813 * 25 24 22 44 44 H 1.08998 * 109.46991 * 179.97438 * 25 24 22 45 45 H 1.08999 * 109.47061 * 299.99963 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9278 0.5457 -0.3247 6 6 4.0028 2.0462 1.3010 7 6 3.8395 3.4327 0.6560 8 1 4.6666 4.1119 0.8625 9 7 2.5256 4.0434 0.8985 10 6 2.6296 5.1537 1.8548 11 6 1.2446 5.7626 2.0819 12 6 0.6926 6.2837 0.7534 13 6 0.3031 4.6941 2.6413 14 6 1.3511 6.9012 3.0633 15 1 2.3109 7.1644 3.4829 16 6 0.2236 7.6075 3.4250 17 7 -0.9450 7.2872 2.9137 18 14 0.3558 9.0193 4.6410 19 1 0.6094 10.2841 3.9054 20 1 -0.9130 9.1361 5.4037 21 1 1.4760 8.7599 5.5807 22 6 3.9482 2.7254 -0.7051 23 1 4.9716 2.6347 -1.0695 24 16 2.8085 3.3780 -1.9563 25 6 3.2785 2.4657 -3.4521 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.0410 1.7699 1.4851 32 1 3.3620 1.8901 2.1688 33 1 1.8596 3.3547 1.2150 34 1 3.0225 4.7823 2.8014 35 1 3.3006 5.9147 1.4564 36 1 0.6154 5.4599 0.0438 37 1 -0.2944 6.7171 0.9151 38 1 1.3633 7.0449 0.3548 39 1 0.6964 4.3229 3.5876 40 1 -0.6838 5.1279 2.8026 41 1 0.2259 3.8703 1.9318 42 1 -1.7384 7.7838 3.1683 43 1 3.1470 1.3970 -3.2822 44 1 2.6482 2.7814 -4.2834 45 1 4.3226 2.6700 -3.6892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459727340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:48 Heat of formation + Delta-G solvation = -20.842857 kcal Electronic energy + Delta-G solvation = -22244.958771 eV Core-core repulsion = 19196.799000 eV Total energy + Delta-G solvation = -3048.159772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72700 -36.81232 -35.65234 -32.46228 -30.83565 -29.92164 -28.70399 -25.78236 -25.41283 -25.09529 -24.45466 -23.09055 -22.58645 -19.31552 -18.42742 -16.96360 -16.38467 -15.68720 -15.56487 -15.04244 -14.66276 -14.31957 -14.00768 -13.67819 -13.43459 -13.15910 -12.95551 -12.79974 -12.62450 -12.48561 -12.35063 -11.85855 -11.68626 -11.50988 -11.08887 -11.05356 -10.89062 -10.64798 -10.56742 -10.47650 -10.22860 -10.05770 -9.93861 -9.51665 -9.26629 -9.24352 -8.92729 -8.49300 -8.19009 -7.52834 -7.06672 -5.81519 -3.91731 2.05270 3.02348 3.37014 3.43626 3.46314 3.60606 4.42987 4.53173 4.57482 4.81020 4.92240 5.09650 5.14534 5.25182 5.28505 5.29721 5.36174 5.43511 5.44926 5.57503 5.74253 5.80428 5.86451 5.97036 6.02829 6.09310 6.23447 6.47420 6.52010 6.86079 7.02397 7.24071 7.31114 7.34428 7.57902 7.65003 7.86476 7.88677 7.97216 8.20328 8.35378 8.49093 8.67280 9.10009 9.72595 11.18728 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.004591 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.028272 B = 6097.695944 C = 6412.296165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.333 6.333 4 C 0.078 3.922 5 H 0.066 0.934 6 C -0.190 4.190 7 C 0.105 3.895 8 H 0.084 0.916 9 N -0.651 5.651 10 C 0.077 3.923 11 C 0.071 3.929 12 C -0.118 4.118 13 C -0.131 4.131 14 C -0.505 4.505 15 H 0.050 0.950 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.097 4.097 23 H 0.105 0.895 24 S -0.149 6.149 25 C -0.155 4.155 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.353 0.647 34 H 0.010 0.990 35 H 0.055 0.945 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.082 0.918 41 H 0.014 0.986 42 H 0.257 0.743 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.257 -15.298 -8.095 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.251 6.251 4 C 0.016 3.984 5 H 0.084 0.916 6 C -0.231 4.231 7 C -0.009 4.009 8 H 0.102 0.898 9 N -0.284 5.284 10 C -0.051 4.051 11 C 0.070 3.930 12 C -0.175 4.175 13 C -0.189 4.189 14 C -0.543 4.543 15 H 0.068 0.932 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.227 4.227 23 H 0.123 0.877 24 S 0.080 5.920 25 C -0.324 4.324 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.176 0.824 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.100 0.900 41 H 0.032 0.968 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.112 0.888 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.130 -13.865 -8.562 17.788 hybrid contribution 1.538 -0.944 1.343 2.250 sum 8.668 -14.810 -7.219 18.617 Atomic orbital electron populations 1.21713 0.93491 1.01690 1.03875 1.22476 0.95914 0.84335 0.99136 1.88133 1.17993 1.24972 1.94042 1.22932 0.83164 0.96237 0.96030 0.91587 1.24179 1.01466 0.99353 0.98113 1.22300 0.94780 0.93095 0.90706 0.89783 1.60276 1.04957 1.12983 1.50153 1.22197 1.00910 0.91299 0.90726 1.18065 0.88466 0.92683 0.93767 1.21614 1.01945 0.98027 0.95945 1.21814 1.03805 0.96722 0.96536 1.21118 0.93633 1.14813 1.24776 0.93161 1.24874 0.95482 0.97023 0.96173 1.69849 0.98427 1.40375 1.43610 0.86692 0.77212 0.83120 0.81474 1.20849 1.21414 1.20205 1.25500 1.00226 0.99119 0.97882 0.87663 1.87728 1.49285 1.54118 1.00872 1.23516 1.04106 1.03250 1.01571 0.91473 0.91668 0.91466 0.94075 0.93988 0.89371 0.90214 0.82442 0.97130 0.92691 0.95603 0.91013 0.96489 0.96532 0.89974 0.96758 0.93302 0.91721 0.88825 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 37.16 0.38 -1.22 16 2 C 0.06 0.64 6.50 37.16 0.24 0.88 16 3 O -0.33 -4.65 7.95 -35.23 -0.28 -4.93 16 4 C 0.08 0.96 4.24 -25.92 -0.11 0.85 16 5 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 6 C -0.19 -2.35 7.46 -25.92 -0.19 -2.54 16 7 C 0.10 1.57 4.16 -66.90 -0.28 1.29 16 8 H 0.08 1.24 7.87 -51.93 -0.41 0.84 16 9 N -0.65 -12.11 4.65 -105.86 -0.49 -12.61 16 10 C 0.08 1.65 4.43 -3.82 -0.02 1.63 16 11 C 0.07 1.76 0.57 -155.66 -0.09 1.67 16 12 C -0.12 -3.01 8.09 37.16 0.30 -2.71 16 13 C -0.13 -3.21 7.92 37.16 0.29 -2.91 16 14 C -0.50 -13.89 8.01 -34.44 -0.28 -14.17 16 15 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 16 C 0.07 1.81 5.15 -17.82 -0.09 1.71 16 17 N -0.88 -25.06 9.35 55.43 0.52 -24.54 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C -0.10 -1.28 4.22 -25.92 -0.11 -1.39 16 23 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 24 S -0.15 -2.28 20.54 -107.50 -2.21 -4.49 16 25 C -0.16 -1.74 10.76 101.05 1.09 -0.65 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.35 6.83 5.07 -39.29 -0.20 6.63 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.05 1.21 8.13 -51.93 -0.42 0.79 16 36 H 0.02 0.62 7.60 -51.93 -0.39 0.23 16 37 H 0.07 2.00 6.07 -51.93 -0.32 1.68 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 41 H 0.01 0.31 6.57 -51.93 -0.34 -0.03 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 45 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -28.87 360.36 -9.17 -38.04 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.26 Total: 4.14 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 1.14 Total: -17.55 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.03 Total: -37.15 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.28 Total: -4.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.21 Total: -4.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.87 -9.17 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.201 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds