Wall clock time and date at job start Tue Mar 31 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47181 * 2 1 4 4 C 1.42894 * 114.00288 * 180.02562 * 3 2 1 5 5 H 1.09006 * 112.85161 * 18.80036 * 4 3 2 6 6 C 1.53785 * 113.61553 * 247.49734 * 4 3 2 7 7 C 1.53784 * 87.08095 * 270.88341 * 6 4 3 8 8 H 1.09000 * 113.68886 * 220.00483 * 7 6 4 9 9 N 1.46898 * 113.61583 * 89.11178 * 7 6 4 10 10 C 1.46906 * 110.99888 * 107.50509 * 9 7 6 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46733 * 299.99953 * 11 10 9 13 13 C 1.53005 * 109.47212 * 59.99438 * 11 10 9 14 14 C 1.50696 * 109.47429 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99822 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00339 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47112 * 90.00199 * 18 16 14 20 20 H 1.48499 * 109.47134 * 210.00310 * 18 16 14 21 21 H 1.48498 * 109.47011 * 329.99931 * 18 16 14 22 22 C 1.53781 * 87.08004 * 334.56516 * 7 6 4 23 23 H 1.09007 * 113.61436 * 270.88431 * 22 7 6 24 24 S 1.81401 * 113.61479 * 139.98438 * 22 7 6 25 25 C 1.81402 * 102.99948 * 175.00108 * 24 22 7 26 26 H 1.09003 * 109.47335 * 59.99866 * 1 2 3 27 27 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47015 * 299.99746 * 1 2 3 29 29 H 1.09002 * 109.47015 * 240.00254 * 2 1 3 30 30 H 1.09003 * 109.47335 * 120.00134 * 2 1 3 31 31 H 1.08996 * 113.61866 * 156.33302 * 6 4 3 32 32 H 1.08997 * 113.61220 * 25.43097 * 6 4 3 33 33 H 1.00901 * 111.00121 * 343.55095 * 9 7 6 34 34 H 1.09004 * 109.47040 * 299.99934 * 10 9 7 35 35 H 1.09000 * 109.47033 * 59.99886 * 10 9 7 36 36 H 1.09002 * 109.47288 * 60.00045 * 12 11 10 37 37 H 1.09001 * 109.46630 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47188 * 299.99959 * 12 11 10 39 39 H 1.08996 * 109.46524 * 60.00440 * 13 11 10 40 40 H 1.09001 * 109.46962 * 180.02562 * 13 11 10 41 41 H 1.08992 * 109.47457 * 300.00343 * 13 11 10 42 42 H 0.97000 * 120.00540 * 179.97438 * 17 16 14 43 43 H 1.09007 * 109.47229 * 59.99813 * 25 24 22 44 44 H 1.08998 * 109.46991 * 179.97438 * 25 24 22 45 45 H 1.08999 * 109.47061 * 299.99963 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9278 0.5457 -0.3247 6 6 4.0028 2.0462 1.3010 7 6 3.8395 3.4327 0.6560 8 1 4.6666 4.1119 0.8625 9 7 2.5256 4.0434 0.8985 10 6 2.6296 5.1537 1.8548 11 6 1.2446 5.7626 2.0819 12 6 0.6926 6.2837 0.7534 13 6 0.3031 4.6941 2.6413 14 6 1.3511 6.9012 3.0633 15 1 2.3109 7.1644 3.4829 16 6 0.2236 7.6075 3.4250 17 7 -0.9450 7.2872 2.9137 18 14 0.3558 9.0193 4.6410 19 1 0.6094 10.2841 3.9054 20 1 -0.9130 9.1361 5.4037 21 1 1.4760 8.7599 5.5807 22 6 3.9482 2.7254 -0.7051 23 1 4.9716 2.6347 -1.0695 24 16 2.8085 3.3780 -1.9563 25 6 3.2785 2.4657 -3.4521 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.0410 1.7699 1.4851 32 1 3.3620 1.8901 2.1688 33 1 1.8596 3.3547 1.2150 34 1 3.0225 4.7823 2.8014 35 1 3.3006 5.9147 1.4564 36 1 0.6154 5.4599 0.0438 37 1 -0.2944 6.7171 0.9151 38 1 1.3633 7.0449 0.3548 39 1 0.6964 4.3229 3.5876 40 1 -0.6838 5.1279 2.8026 41 1 0.2259 3.8703 1.9318 42 1 -1.7384 7.7838 3.1683 43 1 3.1470 1.3970 -3.2822 44 1 2.6482 2.7814 -4.2834 45 1 4.3226 2.6700 -3.6892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459727340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:47 Heat of formation + Delta-G solvation = -36.508322 kcal Electronic energy + Delta-G solvation = -22245.638077 eV Core-core repulsion = 19196.799000 eV Total energy + Delta-G solvation = -3048.839077 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78916 -38.31048 -37.04242 -34.23901 -32.09829 -31.35848 -29.60324 -27.47674 -27.21692 -26.74796 -25.98275 -24.33593 -23.53402 -20.43331 -20.32632 -17.98888 -17.90034 -17.39403 -16.58443 -16.44784 -16.16267 -15.62699 -15.34481 -15.07977 -14.55663 -14.40025 -14.11791 -13.98688 -13.92847 -13.75346 -13.63685 -13.34762 -13.06016 -12.95164 -12.73011 -12.52373 -12.46120 -12.36418 -12.12788 -12.04184 -11.93995 -11.62301 -11.32235 -11.26493 -10.87210 -10.57867 -10.42277 -10.31391 -10.22894 -8.97349 -8.22558 -7.93157 -6.10492 1.03706 1.43504 1.44914 1.53623 2.03496 2.48442 2.73172 3.28355 3.32404 3.58027 3.72716 3.93740 4.14637 4.27654 4.40943 4.44580 4.45442 4.47250 4.55922 4.57642 4.64357 4.70934 4.80620 4.90926 4.94395 4.96782 5.00161 5.06424 5.08870 5.12544 5.24403 5.33109 5.37427 5.50594 5.59079 5.72437 5.80764 6.22744 6.33396 6.39646 6.51498 6.55025 6.79068 6.99970 7.56773 9.05068 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.004591 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.028272 B = 6097.695944 C = 6412.296165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.082 3.918 5 H 0.097 0.903 6 C -0.177 4.177 7 C 0.085 3.915 8 H 0.083 0.917 9 N -0.654 5.654 10 C 0.094 3.906 11 C 0.063 3.937 12 C -0.099 4.099 13 C -0.115 4.115 14 C -0.525 4.525 15 H 0.045 0.955 16 C 0.021 3.979 17 N -0.904 5.904 18 Si 0.946 3.054 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.078 4.078 23 H 0.132 0.868 24 S -0.238 6.238 25 C -0.132 4.132 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.347 0.653 34 H 0.007 0.993 35 H 0.044 0.956 36 H 0.030 0.970 37 H 0.045 0.955 38 H 0.006 0.994 39 H 0.015 0.985 40 H 0.054 0.946 41 H 0.027 0.973 42 H 0.257 0.743 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.998 -17.022 -8.430 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.021 3.979 5 H 0.114 0.886 6 C -0.217 4.217 7 C -0.028 4.028 8 H 0.101 0.899 9 N -0.287 5.287 10 C -0.035 4.035 11 C 0.062 3.938 12 C -0.157 4.157 13 C -0.173 4.173 14 C -0.563 4.563 15 H 0.063 0.937 16 C -0.178 4.178 17 N -0.544 5.544 18 Si 0.772 3.228 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.208 4.208 23 H 0.150 0.850 24 S -0.010 6.010 25 C -0.301 4.301 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.083 0.917 33 H 0.169 0.831 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.886 -15.604 -8.904 20.043 hybrid contribution 1.009 -0.443 1.383 1.768 sum 9.895 -16.047 -7.521 20.298 Atomic orbital electron populations 1.21724 0.93872 1.02817 1.02222 1.22620 0.95673 0.83415 1.00441 1.88114 1.19125 1.26769 1.94141 1.22994 0.82732 0.96924 0.95286 0.88554 1.24120 1.03043 0.96993 0.97581 1.22473 0.92707 0.94522 0.93108 0.89893 1.60180 1.07110 1.12557 1.48807 1.21812 0.98257 0.92109 0.91297 1.18098 0.90500 0.92446 0.92709 1.21400 1.00116 0.97584 0.96564 1.21601 1.02060 0.96808 0.96811 1.21429 0.93480 1.15919 1.25506 0.93709 1.25558 0.95240 0.99228 0.97746 1.69989 0.98830 1.41137 1.44398 0.85755 0.77273 0.80235 0.79489 1.20625 1.21057 1.19658 1.25526 1.00824 0.98829 0.95659 0.84991 1.88000 1.51571 1.56463 1.04929 1.23438 1.04975 1.02976 0.98680 0.92801 0.89178 0.93368 0.92367 0.92851 0.86274 0.91663 0.83102 0.97464 0.93700 0.95148 0.93564 0.97511 0.96578 0.92703 0.95407 0.93395 0.90513 0.88445 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 10.28 71.98 0.74 -2.30 16 2 C 0.05 1.08 6.50 71.98 0.47 1.55 16 3 O -0.36 -9.54 7.95 -148.98 -1.18 -10.72 16 4 C 0.08 1.76 4.24 31.12 0.13 1.89 16 5 H 0.10 1.50 7.87 -2.38 -0.02 1.48 16 6 C -0.18 -3.90 7.46 31.12 0.23 -3.66 16 7 C 0.08 2.42 4.16 45.44 0.19 2.61 16 8 H 0.08 2.35 7.87 -2.39 -0.02 2.33 16 9 N -0.65 -24.27 4.65 -488.84 -2.27 -26.54 16 10 C 0.09 4.09 4.43 86.30 0.38 4.47 16 11 C 0.06 3.20 0.57 -52.93 -0.03 3.17 16 12 C -0.10 -5.19 8.09 71.98 0.58 -4.61 16 13 C -0.11 -5.73 7.92 71.98 0.57 -5.16 16 14 C -0.52 -29.29 8.01 25.60 0.21 -29.08 16 15 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 16 C 0.02 1.18 5.15 84.65 0.44 1.61 16 17 N -0.90 -52.27 9.35 21.45 0.20 -52.07 16 18 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.08 -1.88 4.22 31.12 0.13 -1.75 16 23 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 24 S -0.24 -7.08 20.54 -56.49 -1.16 -8.24 16 25 C -0.13 -2.62 10.76 113.37 1.22 -1.40 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.66 8.07 -2.39 -0.02 1.65 16 33 H 0.35 13.45 5.07 -89.69 -0.45 13.00 16 34 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 35 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 36 H 0.03 1.52 7.60 -2.39 -0.02 1.50 16 37 H 0.05 2.64 6.07 -2.39 -0.01 2.63 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 3.04 6.07 -2.39 -0.01 3.02 16 41 H 0.03 1.27 6.57 -2.39 -0.02 1.25 16 42 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -63.28 360.36 3.35 -59.93 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.48 Total: 23.81 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 5.26 Total: -32.67 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.07 Total: -78.61 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.18 Total: -10.72 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -1.16 Total: -8.24 kcal Total: -63.28 3.35 -59.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.425 kcal (2) G-P(sol) polarization free energy of solvation -63.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds