Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47543 * 2 1 4 4 C 1.42898 * 114.00246 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.85078 * 21.69103 * 4 3 2 6 6 C 1.53781 * 113.61420 * 250.49744 * 4 3 2 7 7 C 1.53782 * 87.08207 * 270.88548 * 6 4 3 8 8 H 1.08994 * 113.61904 * 89.11388 * 7 6 4 9 9 N 1.46904 * 113.61513 * 219.93609 * 7 6 4 10 10 C 1.46898 * 110.99939 * 254.13456 * 9 7 6 11 11 C 1.52999 * 109.46885 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47353 * 299.99935 * 11 10 9 13 13 C 1.52998 * 109.47067 * 60.00051 * 11 10 9 14 14 C 1.50703 * 109.47292 * 179.97438 * 11 10 9 15 15 H 1.08002 * 119.99629 * 1.36680 * 14 11 10 16 16 C 1.37868 * 120.00310 * 181.35897 * 14 11 10 17 17 N 1.31519 * 120.00365 * 193.96550 * 16 14 11 18 18 Si 1.86804 * 119.99907 * 13.96893 * 16 14 11 19 19 H 1.48500 * 109.46960 * 84.55481 * 18 16 14 20 20 H 1.48505 * 109.46692 * 204.55163 * 18 16 14 21 21 H 1.48498 * 109.47002 * 324.55066 * 18 16 14 22 22 C 1.53788 * 87.17083 * 334.52463 * 7 6 4 23 23 H 1.08997 * 113.61109 * 270.92854 * 22 7 6 24 24 S 1.81395 * 113.61384 * 140.02349 * 22 7 6 25 25 C 1.81401 * 103.00142 * 174.99971 * 24 22 7 26 26 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47146 * 299.99806 * 1 2 3 28 28 H 1.09002 * 109.47130 * 59.99653 * 1 2 3 29 29 H 1.09000 * 109.47274 * 239.99676 * 2 1 3 30 30 H 1.09002 * 109.47130 * 120.00347 * 2 1 3 31 31 H 1.08998 * 113.61644 * 156.33675 * 6 4 3 32 32 H 1.08997 * 113.61608 * 25.43325 * 6 4 3 33 33 H 1.00900 * 110.99969 * 130.17531 * 9 7 6 34 34 H 1.08998 * 109.47265 * 299.99734 * 10 9 7 35 35 H 1.08999 * 109.46898 * 59.99951 * 10 9 7 36 36 H 1.09002 * 109.46940 * 69.31859 * 12 11 10 37 37 H 1.09003 * 109.46842 * 189.31605 * 12 11 10 38 38 H 1.08996 * 109.47475 * 309.31637 * 12 11 10 39 39 H 1.09005 * 109.47542 * 60.00022 * 13 11 10 40 40 H 1.09004 * 109.47254 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47687 * 299.99663 * 13 11 10 42 42 H 0.96990 * 120.00378 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.47088 * 179.97438 * 25 24 22 44 44 H 1.08992 * 109.46987 * 300.00406 * 25 24 22 45 45 H 1.09001 * 109.46745 * 59.99944 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9267 0.5630 -0.3703 6 6 4.0073 1.9778 1.3289 7 6 3.8420 3.3958 0.7573 8 1 2.8678 3.8390 0.9637 9 7 4.9578 4.2947 1.0814 10 6 4.5689 5.2662 2.1123 11 6 5.7543 6.1823 2.4229 12 6 6.9285 5.3428 2.9303 13 6 6.1705 6.9261 1.1523 14 6 5.3552 7.1793 3.4801 15 1 4.3629 7.1473 3.9054 16 6 6.2567 8.1322 3.9045 17 7 6.0207 8.8186 5.0012 18 14 7.8135 8.4485 2.9216 19 1 7.5204 9.4057 1.8248 20 1 8.8540 9.0207 3.8133 21 1 8.3034 7.1704 2.3456 22 6 3.9470 2.7624 -0.6401 23 1 4.9693 2.6911 -1.0113 24 16 2.8044 3.4815 -1.8516 25 6 3.2703 2.6506 -3.3953 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 5.0460 1.6923 1.4950 32 1 3.3693 1.7768 2.1896 33 1 5.2978 4.7618 0.2542 34 1 3.7321 5.8640 1.7511 35 1 4.2727 4.7362 3.0176 36 1 7.3236 4.7393 2.1130 37 1 7.7108 6.0021 3.3063 38 1 6.5876 4.6888 3.7329 39 1 5.3341 7.5242 0.7908 40 1 7.0148 7.5791 1.3737 41 1 6.4592 6.2053 0.3873 42 1 6.6547 9.4892 5.2996 43 1 2.6380 3.0107 -4.2069 44 1 4.3138 2.8671 -3.6238 45 1 3.1387 1.5745 -3.2827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459727341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = -6.928819 kcal Electronic energy + Delta-G solvation = -21613.508619 eV Core-core repulsion = 18565.952205 eV Total energy + Delta-G solvation = -3047.556414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71974 -37.27482 -35.99439 -32.67564 -31.31411 -30.54903 -29.06636 -26.26109 -25.92537 -25.27852 -24.70846 -23.00374 -22.72060 -19.76773 -18.71331 -17.23639 -16.51587 -15.93733 -15.74214 -15.49023 -15.02966 -14.81100 -14.44804 -13.76304 -13.64970 -13.38833 -13.11389 -12.96717 -12.90034 -12.84935 -12.70010 -12.35678 -12.09095 -11.84537 -11.73421 -11.61547 -11.33194 -11.10206 -10.73626 -10.56143 -10.25139 -10.02575 -9.98708 -9.80785 -9.76839 -9.52525 -8.93040 -8.52273 -8.33661 -7.91320 -7.59272 -6.04364 -3.99790 1.66122 2.55344 3.34331 3.40642 3.42895 3.47260 4.35950 4.38521 4.47089 4.62557 4.77690 4.90264 4.95493 4.99353 5.00491 5.12947 5.14764 5.19181 5.28810 5.48334 5.53161 5.61259 5.71689 5.91647 5.97431 6.00567 6.03222 6.13159 6.21930 6.29201 6.55835 6.62141 6.80591 6.84854 6.94907 7.09198 7.13852 7.43228 7.52292 7.63760 7.84901 7.94936 8.59222 9.00822 9.61790 11.09195 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.003855 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.297476 B = 7260.774517 C = 7793.212726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.346 6.346 4 C 0.075 3.925 5 H 0.074 0.926 6 C -0.139 4.139 7 C 0.100 3.900 8 H 0.081 0.919 9 N -0.677 5.677 10 C 0.084 3.916 11 C 0.041 3.959 12 C -0.126 4.126 13 C -0.149 4.149 14 C -0.511 4.511 15 H 0.071 0.929 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.885 3.115 19 H -0.288 1.288 20 H -0.308 1.308 21 H -0.246 1.246 22 C -0.088 4.088 23 H 0.117 0.883 24 S -0.230 6.230 25 C -0.126 4.126 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.339 0.661 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.033 0.967 42 H 0.262 0.738 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 -18.538 -14.460 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.264 6.264 4 C 0.012 3.988 5 H 0.092 0.908 6 C -0.180 4.180 7 C -0.012 4.012 8 H 0.099 0.901 9 N -0.309 5.309 10 C -0.044 4.044 11 C 0.040 3.960 12 C -0.184 4.184 13 C -0.206 4.206 14 C -0.549 4.549 15 H 0.089 0.911 16 C -0.129 4.129 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.216 1.216 20 H -0.236 1.236 21 H -0.172 1.172 22 C -0.218 4.218 23 H 0.135 0.865 24 S -0.001 6.001 25 C -0.295 4.295 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.263 -17.874 -13.781 23.423 hybrid contribution 1.401 -0.118 -1.252 1.882 sum -4.863 -17.993 -15.033 23.945 Atomic orbital electron populations 1.21718 0.93686 1.01930 1.03388 1.22483 0.95663 0.84149 0.99653 1.88045 1.18576 1.25484 1.94301 1.22962 0.82615 0.96047 0.97137 0.90769 1.23515 1.02009 0.95731 0.96696 1.22736 0.94993 0.93739 0.89710 0.90097 1.60856 1.32023 1.23761 1.14244 1.22009 0.97307 0.91744 0.93336 1.18474 0.91823 0.92733 0.93004 1.22069 0.98555 0.98711 0.99031 1.22362 1.00159 0.99394 0.98665 1.20871 1.00898 1.13237 1.19918 0.91072 1.24975 0.97682 0.95942 0.94262 1.69965 1.37348 1.25050 1.21107 0.87307 0.83424 0.78522 0.78979 1.21628 1.23650 1.17187 1.25632 1.00495 0.98821 0.96802 0.86496 1.87020 1.51212 1.58250 1.03623 1.23338 1.04664 1.03112 0.98342 0.91389 0.91721 0.91753 0.93834 0.93497 0.88228 0.90461 0.84106 0.95827 0.91646 0.95020 0.93800 0.94104 0.93465 0.94256 0.94829 0.92782 0.88491 0.90865 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.51 6.51 37.16 0.24 0.75 16 3 O -0.35 -4.11 9.36 -35.23 -0.33 -4.44 16 4 C 0.07 0.82 4.23 -25.78 -0.11 0.71 16 5 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 6 C -0.14 -1.71 7.71 -25.92 -0.20 -1.91 16 7 C 0.10 1.44 3.64 -66.89 -0.24 1.19 16 8 H 0.08 1.33 7.84 -51.93 -0.41 0.92 16 9 N -0.68 -11.09 5.95 -105.86 -0.63 -11.72 16 10 C 0.08 1.69 4.43 -3.83 -0.02 1.67 16 11 C 0.04 0.93 0.57 -155.66 -0.09 0.85 16 12 C -0.13 -2.79 7.55 37.16 0.28 -2.51 16 13 C -0.15 -3.21 7.36 37.16 0.27 -2.94 16 14 C -0.51 -14.26 8.62 -34.44 -0.30 -14.55 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 2.11 5.32 -17.82 -0.09 2.02 16 17 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 18 Si 0.88 22.14 22.79 -169.99 -3.87 18.27 16 19 H -0.29 -7.18 7.10 56.52 0.40 -6.78 16 20 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 21 H -0.25 -5.71 4.65 56.52 0.26 -5.44 16 22 C -0.09 -1.06 3.85 -25.77 -0.10 -1.16 16 23 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 24 S -0.23 -2.95 21.42 -107.50 -2.30 -5.25 16 25 C -0.13 -1.14 10.76 101.05 1.09 -0.05 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.34 5.47 6.60 -39.29 -0.26 5.21 16 34 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.03 0.62 7.88 -51.93 -0.41 0.22 16 37 H 0.04 1.02 4.30 -51.93 -0.22 0.80 16 38 H 0.04 0.89 8.12 -51.93 -0.42 0.46 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 41 H 0.03 0.62 6.57 -51.93 -0.34 0.28 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -30.42 354.89 -8.10 -38.52 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.20 Total: 2.91 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 1.12 Total: -16.74 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.14 Total: -38.62 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.33 Total: -4.44 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -3.87 Total: 18.27 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.30 Total: -5.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.42 -8.10 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.586 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds