Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47543 * 2 1 4 4 C 1.42898 * 114.00246 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.85078 * 21.69103 * 4 3 2 6 6 C 1.53781 * 113.61420 * 250.49744 * 4 3 2 7 7 C 1.53782 * 87.08207 * 270.88548 * 6 4 3 8 8 H 1.08994 * 113.61904 * 89.11388 * 7 6 4 9 9 N 1.46904 * 113.61513 * 219.93609 * 7 6 4 10 10 C 1.46898 * 110.99939 * 254.13456 * 9 7 6 11 11 C 1.52999 * 109.46885 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47353 * 299.99935 * 11 10 9 13 13 C 1.52998 * 109.47067 * 60.00051 * 11 10 9 14 14 C 1.50703 * 109.47292 * 179.97438 * 11 10 9 15 15 H 1.08002 * 119.99629 * 1.36680 * 14 11 10 16 16 C 1.37868 * 120.00310 * 181.35897 * 14 11 10 17 17 N 1.31519 * 120.00365 * 193.96550 * 16 14 11 18 18 Si 1.86804 * 119.99907 * 13.96893 * 16 14 11 19 19 H 1.48500 * 109.46960 * 84.55481 * 18 16 14 20 20 H 1.48505 * 109.46692 * 204.55163 * 18 16 14 21 21 H 1.48498 * 109.47002 * 324.55066 * 18 16 14 22 22 C 1.53788 * 87.17083 * 334.52463 * 7 6 4 23 23 H 1.08997 * 113.61109 * 270.92854 * 22 7 6 24 24 S 1.81395 * 113.61384 * 140.02349 * 22 7 6 25 25 C 1.81401 * 103.00142 * 174.99971 * 24 22 7 26 26 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47146 * 299.99806 * 1 2 3 28 28 H 1.09002 * 109.47130 * 59.99653 * 1 2 3 29 29 H 1.09000 * 109.47274 * 239.99676 * 2 1 3 30 30 H 1.09002 * 109.47130 * 120.00347 * 2 1 3 31 31 H 1.08998 * 113.61644 * 156.33675 * 6 4 3 32 32 H 1.08997 * 113.61608 * 25.43325 * 6 4 3 33 33 H 1.00900 * 110.99969 * 130.17531 * 9 7 6 34 34 H 1.08998 * 109.47265 * 299.99734 * 10 9 7 35 35 H 1.08999 * 109.46898 * 59.99951 * 10 9 7 36 36 H 1.09002 * 109.46940 * 69.31859 * 12 11 10 37 37 H 1.09003 * 109.46842 * 189.31605 * 12 11 10 38 38 H 1.08996 * 109.47475 * 309.31637 * 12 11 10 39 39 H 1.09005 * 109.47542 * 60.00022 * 13 11 10 40 40 H 1.09004 * 109.47254 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47687 * 299.99663 * 13 11 10 42 42 H 0.96990 * 120.00378 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.47088 * 179.97438 * 25 24 22 44 44 H 1.08992 * 109.46987 * 300.00406 * 25 24 22 45 45 H 1.09001 * 109.46745 * 59.99944 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9267 0.5630 -0.3703 6 6 4.0073 1.9778 1.3289 7 6 3.8420 3.3958 0.7573 8 1 2.8678 3.8390 0.9637 9 7 4.9578 4.2947 1.0814 10 6 4.5689 5.2662 2.1123 11 6 5.7543 6.1823 2.4229 12 6 6.9285 5.3428 2.9303 13 6 6.1705 6.9261 1.1523 14 6 5.3552 7.1793 3.4801 15 1 4.3629 7.1473 3.9054 16 6 6.2567 8.1322 3.9045 17 7 6.0207 8.8186 5.0012 18 14 7.8135 8.4485 2.9216 19 1 7.5204 9.4057 1.8248 20 1 8.8540 9.0207 3.8133 21 1 8.3034 7.1704 2.3456 22 6 3.9470 2.7624 -0.6401 23 1 4.9693 2.6911 -1.0113 24 16 2.8044 3.4815 -1.8516 25 6 3.2703 2.6506 -3.3953 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 5.0460 1.6923 1.4950 32 1 3.3693 1.7768 2.1896 33 1 5.2978 4.7618 0.2542 34 1 3.7321 5.8640 1.7511 35 1 4.2727 4.7362 3.0176 36 1 7.3236 4.7393 2.1130 37 1 7.7108 6.0021 3.3063 38 1 6.5876 4.6888 3.7329 39 1 5.3341 7.5242 0.7908 40 1 7.0148 7.5791 1.3737 41 1 6.4592 6.2053 0.3873 42 1 6.6547 9.4892 5.2996 43 1 2.6380 3.0107 -4.2069 44 1 4.3138 2.8671 -3.6238 45 1 3.1387 1.5745 -3.2827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459727341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = -27.218421 kcal Electronic energy + Delta-G solvation = -21614.388442 eV Core-core repulsion = 18565.952205 eV Total energy + Delta-G solvation = -3048.436237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.166 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70830 -38.74376 -37.18970 -34.44274 -32.90870 -31.47987 -29.76665 -27.97322 -27.17297 -26.87863 -26.43123 -23.97616 -23.67053 -20.86220 -20.47674 -18.22738 -18.06774 -17.66608 -16.86922 -16.54588 -16.25511 -16.06261 -15.60629 -15.16834 -14.77451 -14.62023 -14.37449 -14.23473 -14.03777 -13.91973 -13.83605 -13.73749 -13.58556 -13.39792 -12.86183 -12.57211 -12.44062 -12.28519 -12.25246 -11.90490 -11.89188 -11.65517 -11.58930 -11.40843 -10.93486 -10.75808 -10.56459 -10.37138 -10.28404 -9.32445 -8.55796 -8.28598 -6.28088 0.79244 1.36504 1.38717 1.50487 1.72197 2.36507 2.63748 3.08208 3.30573 3.44038 3.47866 3.80891 4.11181 4.21810 4.24626 4.26605 4.36678 4.37000 4.38413 4.44966 4.54808 4.55381 4.58329 4.77342 4.85433 4.87647 4.88910 4.98052 5.03009 5.08257 5.09205 5.10684 5.16338 5.19287 5.31626 5.33765 5.61139 5.76486 5.88771 6.14225 6.34541 6.39005 6.52643 6.78355 7.37013 8.88944 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.003855 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.297476 B = 7260.774517 C = 7793.212726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.370 6.370 4 C 0.085 3.915 5 H 0.105 0.895 6 C -0.135 4.135 7 C 0.089 3.911 8 H 0.052 0.948 9 N -0.663 5.663 10 C 0.100 3.900 11 C 0.037 3.963 12 C -0.120 4.120 13 C -0.147 4.147 14 C -0.515 4.515 15 H 0.024 0.976 16 C 0.015 3.985 17 N -0.949 5.949 18 Si 0.944 3.056 19 H -0.284 1.284 20 H -0.315 1.315 21 H -0.208 1.208 22 C -0.071 4.071 23 H 0.134 0.866 24 S -0.295 6.295 25 C -0.108 4.108 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.343 0.657 34 H 0.005 0.995 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.263 0.737 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 -21.192 -17.399 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.289 6.289 4 C 0.023 3.977 5 H 0.122 0.878 6 C -0.175 4.175 7 C -0.023 4.023 8 H 0.070 0.930 9 N -0.295 5.295 10 C -0.029 4.029 11 C 0.036 3.964 12 C -0.178 4.178 13 C -0.203 4.203 14 C -0.554 4.554 15 H 0.043 0.957 16 C -0.182 4.182 17 N -0.589 5.589 18 Si 0.774 3.226 19 H -0.212 1.212 20 H -0.245 1.245 21 H -0.132 1.132 22 C -0.200 4.200 23 H 0.152 0.848 24 S -0.067 6.067 25 C -0.276 4.276 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.104 0.896 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.524 -20.567 -16.744 26.905 hybrid contribution 0.682 0.665 -0.309 1.002 sum -3.842 -19.902 -17.053 26.489 Atomic orbital electron populations 1.21735 0.93427 1.03087 1.02333 1.22681 0.95964 0.83036 1.00808 1.88038 1.19123 1.27448 1.94312 1.22920 0.82555 0.96578 0.95628 0.87767 1.23507 1.02620 0.94079 0.97307 1.22774 0.92909 0.94029 0.92591 0.92964 1.60818 1.32684 1.22397 1.13596 1.21636 0.95588 0.91718 0.93990 1.18458 0.93295 0.92302 0.92377 1.21969 0.97458 0.98439 0.99897 1.22285 0.99600 0.99881 0.98581 1.21222 0.98908 1.14450 1.20798 0.95715 1.25844 1.01586 0.95708 0.95049 1.70118 1.39141 1.26367 1.23318 0.86339 0.79016 0.79902 0.77347 1.21162 1.24459 1.13207 1.25557 1.01030 0.98520 0.94883 0.84797 1.87295 1.52546 1.59859 1.06965 1.23357 1.05475 1.03241 0.95566 0.89130 0.93049 0.92516 0.92127 0.92722 0.87138 0.91389 0.83653 0.97693 0.93229 0.91878 0.95010 0.94679 0.94058 0.95054 0.90985 0.92830 0.87597 0.89600 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.28 71.98 0.74 -1.42 16 2 C 0.05 0.80 6.51 71.98 0.47 1.26 16 3 O -0.37 -8.21 9.36 -148.98 -1.39 -9.60 16 4 C 0.09 1.63 4.23 31.21 0.13 1.77 16 5 H 0.10 1.42 7.89 -2.39 -0.02 1.40 16 6 C -0.13 -3.06 7.71 31.12 0.24 -2.82 16 7 C 0.09 2.45 3.64 45.44 0.17 2.62 16 8 H 0.05 1.77 7.84 -2.39 -0.02 1.75 16 9 N -0.66 -20.56 5.95 -488.85 -2.91 -23.47 16 10 C 0.10 4.03 4.43 86.30 0.38 4.41 16 11 C 0.04 1.66 0.57 -52.93 -0.03 1.63 16 12 C -0.12 -5.03 7.55 71.98 0.54 -4.49 16 13 C -0.15 -5.96 7.36 71.98 0.53 -5.43 16 14 C -0.52 -29.66 8.62 25.60 0.22 -29.44 16 15 H 0.02 1.60 7.99 -2.91 -0.02 1.57 16 16 C 0.01 0.88 5.32 84.65 0.45 1.33 16 17 N -0.95 -60.78 13.96 21.44 0.30 -60.49 16 18 Si 0.94 45.30 22.79 68.60 1.56 46.86 16 19 H -0.28 -13.36 7.10 99.48 0.71 -12.65 16 20 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 21 H -0.21 -8.73 4.65 99.48 0.46 -8.26 16 22 C -0.07 -1.53 3.85 31.21 0.12 -1.41 16 23 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 24 S -0.30 -7.11 21.42 -56.49 -1.21 -8.32 16 25 C -0.11 -1.61 10.76 113.37 1.22 -0.39 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.34 10.08 6.60 -89.69 -0.59 9.48 16 34 H 0.00 0.21 8.13 -2.39 -0.02 0.19 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 2.24 7.88 -2.39 -0.02 2.22 16 37 H 0.03 1.39 4.30 -2.39 -0.01 1.38 16 38 H 0.03 1.47 8.12 -2.39 -0.02 1.45 16 39 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.03 1.33 2.25 -2.38 -0.01 1.32 16 41 H 0.07 2.37 6.57 -2.39 -0.02 2.35 16 42 H 0.26 15.86 8.31 -92.72 -0.77 15.09 16 43 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -68.80 354.89 1.64 -67.16 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.11 Total: 20.23 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 5.18 Total: -32.37 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.61 Total: -83.95 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -1.39 Total: -9.60 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.56 Total: 46.86 kcal Atomic # 16 Polarization: -7.11 SS G_CDS: -1.21 Total: -8.32 kcal Total: -68.80 1.64 -67.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.940 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds