Wall clock time and date at job start Tue Mar 31 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46811 * 2 1 4 4 C 1.50699 * 109.47321 * 239.99508 * 2 1 3 5 5 H 1.08001 * 119.99948 * 240.00564 * 4 2 1 6 6 C 1.37879 * 119.99850 * 59.99956 * 4 2 1 7 7 N 1.31514 * 120.00063 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99912 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47293 * 59.99897 * 8 6 4 10 10 H 1.48495 * 109.47275 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46940 * 300.00058 * 8 6 4 12 12 N 1.46499 * 109.46838 * 119.99415 * 2 1 3 13 13 C 1.34774 * 120.00159 * 274.99984 * 12 2 1 14 14 O 1.21281 * 120.00250 * 354.72853 * 13 12 2 15 15 C 1.50703 * 120.00126 * 174.73043 * 13 12 2 16 16 C 1.50706 * 115.54812 * 293.25005 * 15 13 12 17 17 C 1.38227 * 120.00038 * 114.69201 * 16 15 13 18 18 C 1.38244 * 120.00073 * 179.74489 * 17 16 15 19 19 C 1.38238 * 119.99428 * 0.52928 * 18 17 16 20 20 C 1.38233 * 120.00293 * 359.74372 * 19 18 17 21 21 C 1.38238 * 119.99618 * 294.96621 * 16 15 13 22 22 C 1.52998 * 117.50164 * 78.91736 * 15 13 12 23 23 C 1.52996 * 117.50302 * 147.58243 * 15 13 12 24 24 C 1.53003 * 117.49383 * 359.97438 * 23 15 13 25 25 C 1.53002 * 117.50422 * 145.01696 * 23 15 13 26 26 H 1.08996 * 109.47519 * 60.00635 * 1 2 3 27 27 H 1.09004 * 109.47344 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47420 * 300.00482 * 1 2 3 29 29 H 0.96999 * 119.99875 * 180.02562 * 7 6 4 30 30 H 0.97001 * 120.00120 * 94.99891 * 12 2 1 31 31 H 1.07996 * 120.00516 * 359.97438 * 17 16 15 32 32 H 1.07992 * 120.00212 * 180.30027 * 18 17 16 33 33 H 1.08004 * 119.99696 * 179.77137 * 19 18 17 34 34 H 1.07995 * 120.00148 * 179.97438 * 20 19 18 35 35 H 1.08000 * 120.00254 * 359.97438 * 21 16 15 36 36 H 1.08999 * 117.49873 * 214.97917 * 22 15 13 37 37 H 1.09002 * 117.49519 * 0.02562 * 22 15 13 38 38 H 1.08994 * 109.47456 * 60.00306 * 24 23 15 39 39 H 1.09007 * 109.46600 * 180.02562 * 24 23 15 40 40 H 1.08999 * 109.47150 * 299.99761 * 24 23 15 41 41 H 1.09002 * 109.46591 * 54.89945 * 25 23 15 42 42 H 1.08998 * 109.47197 * 174.89933 * 25 23 15 43 43 H 1.08999 * 109.46756 * 294.90215 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8294 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8261 -0.4210 -5.2203 11 1 3.8064 -1.1212 -4.0079 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.9507 1.1783 2.3900 15 6 2.5349 -0.7527 3.6145 16 6 1.5165 -1.7348 4.1339 17 6 1.8065 -3.0861 4.1528 18 6 0.8743 -3.9865 4.6342 19 6 -0.3520 -3.5362 5.0863 20 6 -0.6441 -2.1853 5.0621 21 6 0.2902 -1.2845 4.5860 22 6 4.0126 -1.1025 3.8011 23 6 3.3752 0.0046 4.6446 24 6 3.7580 1.4497 4.3190 25 6 3.1178 -0.2933 6.1231 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.7082 1.1605 -3.4845 30 1 2.2489 -1.6317 1.1528 31 1 2.7626 -3.4384 3.7951 32 1 1.1027 -5.0418 4.6535 33 1 -1.0817 -4.2399 5.4589 34 1 -1.6023 -1.8337 5.4150 35 1 0.0621 -0.2291 4.5675 36 1 4.2482 -2.0426 4.2999 37 1 4.7043 -0.8008 3.0146 38 1 2.8540 2.0451 4.1910 39 1 4.3518 1.8610 5.1353 40 1 4.3414 1.4725 3.3985 41 1 3.2167 -1.3643 6.3004 42 1 3.8430 0.2446 6.7337 43 1 2.1104 0.0274 6.3883 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596994321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:55 Heat of formation + Delta-G solvation = 0.940493 kcal Electronic energy + Delta-G solvation = -23256.587834 eV Core-core repulsion = 20073.928708 eV Total energy + Delta-G solvation = -3182.659126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45152 -38.44138 -36.95494 -34.66917 -32.39229 -31.27885 -30.84999 -29.24033 -28.32060 -27.22443 -25.24936 -24.32095 -22.40454 -22.01013 -20.55258 -19.43089 -18.72265 -17.41357 -16.29278 -15.70370 -15.21662 -15.07784 -14.67422 -14.44846 -14.36785 -13.69480 -13.64408 -13.32768 -13.11575 -12.78312 -12.53369 -12.49506 -12.32975 -11.99308 -11.72457 -11.59427 -11.21727 -11.09863 -11.07486 -10.99538 -10.91021 -10.74893 -10.29825 -10.21984 -9.98072 -9.69964 -9.10340 -9.02093 -8.84204 -8.53759 -8.35480 -7.83876 -6.10318 -4.19302 1.39334 1.47586 3.26429 3.28906 3.31704 3.33005 3.67593 3.85507 4.17153 4.38930 4.58099 4.82247 4.97992 5.03639 5.09860 5.17367 5.21623 5.22852 5.33454 5.57046 5.66415 5.70591 5.76871 5.83400 5.91957 6.00212 6.09547 6.11173 6.12873 6.16990 6.34429 6.53043 6.57244 6.69130 6.70909 6.85204 6.99361 7.05578 7.17486 7.49963 7.60452 7.72724 7.93986 8.17215 8.72208 8.81236 9.17843 9.48313 10.95669 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.005024 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.980708 B = 5572.191615 C = 6271.962034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.544 3.456 14 O -0.546 6.546 15 C -0.117 4.117 16 C -0.029 4.029 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.101 4.101 22 C -0.155 4.155 23 C -0.083 4.083 24 C -0.113 4.113 25 C -0.111 4.111 26 H 0.090 0.910 27 H 0.026 0.974 28 H 0.012 0.988 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 -7.419 16.432 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.348 5.348 13 C 0.328 3.672 14 O -0.425 6.425 15 C -0.120 4.120 16 C -0.030 4.030 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.143 4.143 20 C -0.137 4.137 21 C -0.120 4.120 22 C -0.192 4.192 23 C -0.083 4.083 24 C -0.170 4.170 25 C -0.168 4.168 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.783 -6.421 16.256 17.569 hybrid contribution 0.273 -1.067 -1.050 1.521 sum 2.056 -7.488 15.206 17.074 Atomic orbital electron populations 1.22069 0.98511 0.99079 1.00718 1.18733 0.90896 0.94021 0.80008 0.93324 1.21177 1.32410 1.13152 0.90353 0.92204 1.24878 0.94827 0.94952 0.99004 1.69893 1.35852 1.22486 1.23930 0.86516 0.79157 0.79613 0.81858 1.20180 1.21124 1.20188 1.46456 1.64510 1.13561 1.10237 1.19136 0.77768 0.86894 0.83401 1.90621 1.51730 1.14456 1.85671 1.20413 0.92397 1.01395 0.97844 1.18743 0.93747 0.92454 0.98024 1.21022 0.99846 0.92356 0.99850 1.21068 0.94007 0.99316 0.99442 1.21108 0.96966 0.95657 1.00597 1.21104 0.99131 0.93346 1.00080 1.21027 0.93013 1.00091 0.97822 1.23409 0.92992 0.99971 1.02811 1.21584 1.00255 0.94232 0.92243 1.21407 1.02303 0.92836 1.00409 1.21325 1.01782 1.01221 0.92459 0.89157 0.95519 0.96880 0.92554 0.77966 0.85951 0.86201 0.86381 0.86186 0.86033 0.88114 0.88046 0.90135 0.93069 0.92518 0.92509 0.92063 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.87 2.60 -69.08 -0.18 6.69 16 3 H 0.05 1.45 7.51 -51.93 -0.39 1.06 16 4 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.15 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.70 -15.16 5.07 -54.93 -0.28 -15.44 16 13 C 0.54 11.12 6.70 -10.99 -0.07 11.05 16 14 O -0.55 -12.94 13.89 5.56 0.08 -12.86 16 15 C -0.12 -1.83 2.07 -156.81 -0.33 -2.15 16 16 C -0.03 -0.42 4.06 -104.62 -0.42 -0.85 16 17 C -0.11 -1.41 9.23 -39.58 -0.37 -1.78 16 18 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 19 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 20 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 21 C -0.10 -1.47 9.54 -39.58 -0.38 -1.84 16 22 C -0.15 -2.03 8.72 -26.69 -0.23 -2.26 16 23 C -0.08 -1.14 2.70 -154.47 -0.42 -1.56 16 24 C -0.11 -1.67 8.26 37.16 0.31 -1.36 16 25 C -0.11 -1.26 8.87 37.16 0.33 -0.93 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.39 7.61 8.54 -40.82 -0.35 7.27 16 31 H 0.12 1.34 7.01 -52.49 -0.37 0.98 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.10 1.09 7.06 -51.93 -0.37 0.72 16 37 H 0.10 1.38 8.05 -51.93 -0.42 0.97 16 38 H 0.08 1.37 6.79 -51.93 -0.35 1.02 16 39 H 0.05 0.62 7.98 -51.93 -0.41 0.21 16 40 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 41 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 42 H 0.06 0.60 8.01 -51.93 -0.42 0.18 16 43 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -30.25 352.64 -8.98 -39.23 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.70 Total: 9.14 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -3.00 Total: -16.69 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.35 Total: -39.97 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.25 -8.98 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.174 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds