Wall clock time and date at job start Tue Mar 31 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38776 * 119.77362 * 2 1 4 4 C 1.36605 * 120.66862 * 180.02562 * 3 2 1 5 5 C 1.39745 * 119.88563 * 359.97438 * 4 3 2 6 6 N 1.35777 * 133.60275 * 179.97438 * 5 4 3 7 7 C 1.30121 * 109.64447 * 180.02562 * 6 5 4 8 8 C 1.50693 * 124.94835 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47429 * 275.02415 * 8 7 6 10 10 C 1.46904 * 111.00357 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47377 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.46639 * 304.99846 * 11 10 9 13 13 C 1.53007 * 109.46975 * 64.99368 * 11 10 9 14 14 C 1.52991 * 109.46990 * 184.99409 * 11 10 9 15 15 C 1.50707 * 109.46822 * 174.99772 * 14 11 10 16 16 H 1.07992 * 119.99842 * 0.02562 * 15 14 11 17 17 C 1.37885 * 119.99775 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99687 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47232 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46978 * 120.00034 * 19 17 15 22 22 H 1.48503 * 109.47225 * 239.99538 * 19 17 15 23 23 N 1.36031 * 110.09623 * 0.02562 * 7 6 5 24 24 H 0.96999 * 126.34963 * 180.02562 * 23 7 6 25 25 C 1.38058 * 107.30448 * 359.97438 * 23 7 6 26 26 C 1.37854 * 119.77192 * 180.21568 * 2 1 3 27 27 H 1.09003 * 109.47046 * 90.00419 * 1 2 3 28 28 H 1.08997 * 109.47273 * 210.00490 * 1 2 3 29 29 H 1.09001 * 109.47528 * 330.00604 * 1 2 3 30 30 H 1.07995 * 119.66855 * 359.97428 * 3 2 1 31 31 H 1.07992 * 120.05723 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47365 * 35.02932 * 8 7 6 33 33 H 1.09007 * 109.47034 * 155.02440 * 8 7 6 34 34 H 1.00901 * 110.99983 * 303.95517 * 9 8 7 35 35 H 1.09002 * 109.46402 * 299.99951 * 10 9 8 36 36 H 1.08998 * 109.47420 * 59.99412 * 10 9 8 37 37 H 1.09002 * 109.46742 * 60.00396 * 13 11 10 38 38 H 1.08997 * 109.46599 * 179.97438 * 13 11 10 39 39 H 1.08995 * 109.47004 * 300.00348 * 13 11 10 40 40 H 1.08997 * 109.47584 * 295.00145 * 14 11 10 41 41 H 1.09003 * 109.47068 * 55.00423 * 14 11 10 42 42 H 0.97001 * 119.99544 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.15805 * 359.78125 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2046 0.0000 4 6 3.5620 1.2259 -0.0005 5 6 4.2772 0.0253 -0.0005 6 7 5.6011 -0.2760 -0.0014 7 6 5.7557 -1.5680 -0.0015 8 6 7.0846 -2.2784 -0.0029 9 7 7.5722 -2.4024 -1.3831 10 6 8.8686 -3.0922 -1.4236 11 6 9.3431 -3.2015 -2.8740 12 1 8.5730 -3.6882 -3.4724 13 6 9.6119 -1.8014 -3.4296 14 6 10.6296 -4.0276 -2.9287 15 6 11.0299 -4.2392 -4.3662 16 1 10.4272 -3.8254 -5.1610 17 6 12.1657 -4.9610 -4.6665 18 7 12.8994 -5.4653 -3.6984 19 14 12.6622 -5.2226 -6.4481 20 1 11.6773 -4.5583 -7.3391 21 1 14.0086 -4.6396 -6.6775 22 1 12.6959 -6.6775 -6.7441 23 7 4.5427 -2.1839 -0.0012 24 1 4.3838 -3.1407 -0.0009 25 6 3.5798 -1.1945 -0.0004 26 6 2.1915 -1.1966 -0.0045 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.6471 2.1345 -0.0004 31 1 4.0882 2.1689 -0.0009 32 1 7.8024 -1.7075 0.5861 33 1 6.9664 -3.2713 0.4312 34 1 6.8948 -2.8720 -1.9650 35 1 9.5989 -2.5272 -0.8443 36 1 8.7624 -4.0906 -0.9994 37 1 10.3820 -1.3148 -2.8310 38 1 9.9503 -1.8794 -4.4627 39 1 8.6953 -1.2129 -3.3904 40 1 11.4246 -3.4973 -2.4045 41 1 10.4617 -4.9936 -2.4525 42 1 13.6986 -5.9728 -3.9097 43 1 1.6504 -2.1312 -0.0045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602561981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:07 Heat of formation + Delta-G solvation = 46.263934 kcal Electronic energy + Delta-G solvation = -21282.207832 eV Core-core repulsion = 18133.806829 eV Total energy + Delta-G solvation = -3148.401003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.27306 -38.12630 -36.88702 -34.16004 -33.42741 -32.16714 -31.41946 -30.15796 -28.00491 -26.70686 -25.71525 -24.34324 -22.67573 -22.23684 -21.51465 -20.95204 -19.16984 -17.81455 -17.27307 -16.37158 -15.70456 -15.58768 -15.19279 -14.62699 -14.62006 -14.16231 -14.11421 -14.06107 -13.66314 -13.28584 -12.69775 -12.46957 -12.43492 -12.13843 -12.01482 -11.62964 -11.57031 -11.50166 -11.36420 -10.86704 -10.77779 -10.75378 -10.29221 -10.26858 -10.05198 -9.72292 -9.18627 -8.97258 -8.56671 -8.34026 -8.30817 -8.15003 -5.98631 -3.99486 0.74229 1.32435 2.56488 2.68732 3.31729 3.39486 3.43748 3.66280 3.93411 4.31978 4.45111 4.52331 4.62524 4.84897 4.86612 5.03799 5.14802 5.23586 5.29766 5.37398 5.40839 5.47176 5.47509 5.66768 5.68191 5.79113 5.86270 6.11702 6.19197 6.33829 6.36854 6.38239 6.50437 6.68016 6.69789 6.94697 7.09785 7.16665 7.19421 7.26467 7.46228 7.67951 7.80712 7.83578 8.01607 8.45590 9.07029 9.63983 11.12906 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.002344 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.733659 B =11943.714496 C =12078.488337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.129 4.129 4 C -0.059 4.059 5 C 0.043 3.957 6 N -0.471 5.471 7 C 0.294 3.706 8 C 0.135 3.865 9 N -0.677 5.677 10 C 0.064 3.936 11 C -0.082 4.082 12 H 0.053 0.947 13 C -0.124 4.124 14 C 0.027 3.973 15 C -0.512 4.512 16 H 0.057 0.943 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 N -0.600 5.600 24 H 0.421 0.579 25 C 0.050 3.950 26 C -0.114 4.114 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.338 0.662 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.018 0.982 41 H 0.012 0.988 42 H 0.259 0.741 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.632 8.453 10.555 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.075 4.075 3 C -0.150 4.150 4 C -0.078 4.078 5 C -0.076 4.076 6 N -0.191 5.191 7 C 0.027 3.973 8 C 0.004 3.996 9 N -0.309 5.309 10 C -0.064 4.064 11 C -0.101 4.101 12 H 0.071 0.929 13 C -0.181 4.181 14 C -0.011 4.011 15 C -0.550 4.550 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.211 5.211 24 H 0.259 0.741 25 C -0.060 4.060 26 C -0.135 4.135 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.155 0.845 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.529 9.658 10.587 26.701 hybrid contribution -0.542 -2.316 -0.792 2.507 sum -23.072 7.342 9.796 26.118 Atomic orbital electron populations 1.20754 0.90755 1.02770 1.02405 1.19593 0.95888 0.92181 0.99818 1.20517 0.93454 0.97608 1.03411 1.20034 0.93157 0.95876 0.98745 1.19160 0.89504 0.93093 1.05806 1.70465 1.16218 1.11654 1.20772 1.23568 0.87367 0.88534 0.97845 1.20426 0.88539 0.97369 0.93255 1.60483 1.05827 1.57493 1.07050 1.22230 0.88927 0.95246 0.99948 1.21203 0.99702 0.97293 0.91854 0.92864 1.21599 0.99736 0.95845 1.00967 1.19131 0.90704 0.94096 0.97129 1.21271 1.08653 1.32619 0.92452 0.92502 1.25029 0.96642 0.95926 0.97048 1.69974 1.16051 1.36274 1.31364 0.86568 0.78466 0.77746 0.85422 1.19756 1.21059 1.21145 1.43128 1.05678 1.09140 1.63204 0.74054 1.18849 0.91481 0.89389 1.06292 1.19754 0.89375 0.98384 1.06009 0.91079 0.91671 0.91324 0.85448 0.85253 0.87349 0.93352 0.84481 0.90894 0.95386 0.93989 0.92749 0.93838 0.96408 0.96917 0.93156 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.00 36.01 0.36 -0.26 16 2 C -0.07 -0.63 5.88 -104.56 -0.62 -1.25 16 3 C -0.13 -1.18 9.61 -39.97 -0.38 -1.56 16 4 C -0.06 -0.67 10.05 -39.61 -0.40 -1.06 16 5 C 0.04 0.59 7.23 -84.70 -0.61 -0.02 16 6 N -0.47 -7.16 11.27 -8.24 -0.09 -7.25 16 7 C 0.29 3.74 7.59 -154.82 -1.18 2.56 16 8 C 0.13 1.58 6.31 -4.98 -0.03 1.55 16 9 N -0.68 -9.51 5.94 -115.06 -0.68 -10.19 16 10 C 0.06 1.05 5.07 -3.82 -0.02 1.03 16 11 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 12 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 14 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 15 C -0.51 -14.26 8.41 -34.43 -0.29 -14.55 16 16 H 0.06 1.56 7.05 -52.49 -0.37 1.19 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 N -0.60 -6.25 6.23 -8.00 -0.05 -6.30 16 24 H 0.42 3.00 8.96 -40.82 -0.37 2.64 16 25 C 0.05 0.59 7.31 -83.99 -0.61 -0.02 16 26 C -0.11 -1.09 9.71 -39.50 -0.38 -1.47 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.34 4.50 8.72 -39.29 -0.34 4.16 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 39 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -32.70 357.40 -10.89 -43.59 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.89 Total: 1.22 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -4.28 Total: -17.03 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.09 Total: -49.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.70 -10.89 -43.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602561981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.858 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds