Wall clock time and date at job start Tue Mar 31 2020 06:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38776 * 119.77362 * 2 1 4 4 C 1.36605 * 120.66862 * 180.02562 * 3 2 1 5 5 C 1.39745 * 119.88563 * 359.97438 * 4 3 2 6 6 N 1.35777 * 133.60275 * 179.97438 * 5 4 3 7 7 C 1.30121 * 109.64447 * 180.02562 * 6 5 4 8 8 C 1.50693 * 124.94835 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.47429 * 275.02415 * 8 7 6 10 10 C 1.46904 * 111.00357 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47377 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.46639 * 304.99846 * 11 10 9 13 13 C 1.53007 * 109.46975 * 64.99368 * 11 10 9 14 14 C 1.52991 * 109.46990 * 184.99409 * 11 10 9 15 15 C 1.50707 * 109.46822 * 174.99772 * 14 11 10 16 16 H 1.07992 * 119.99842 * 0.02562 * 15 14 11 17 17 C 1.37885 * 119.99775 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99687 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47232 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46978 * 120.00034 * 19 17 15 22 22 H 1.48503 * 109.47225 * 239.99538 * 19 17 15 23 23 N 1.36031 * 110.09623 * 0.02562 * 7 6 5 24 24 H 0.96999 * 126.34963 * 180.02562 * 23 7 6 25 25 C 1.38058 * 107.30448 * 359.97438 * 23 7 6 26 26 C 1.37854 * 119.77192 * 180.21568 * 2 1 3 27 27 H 1.09003 * 109.47046 * 90.00419 * 1 2 3 28 28 H 1.08997 * 109.47273 * 210.00490 * 1 2 3 29 29 H 1.09001 * 109.47528 * 330.00604 * 1 2 3 30 30 H 1.07995 * 119.66855 * 359.97428 * 3 2 1 31 31 H 1.07992 * 120.05723 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47365 * 35.02932 * 8 7 6 33 33 H 1.09007 * 109.47034 * 155.02440 * 8 7 6 34 34 H 1.00901 * 110.99983 * 303.95517 * 9 8 7 35 35 H 1.09002 * 109.46402 * 299.99951 * 10 9 8 36 36 H 1.08998 * 109.47420 * 59.99412 * 10 9 8 37 37 H 1.09002 * 109.46742 * 60.00396 * 13 11 10 38 38 H 1.08997 * 109.46599 * 179.97438 * 13 11 10 39 39 H 1.08995 * 109.47004 * 300.00348 * 13 11 10 40 40 H 1.08997 * 109.47584 * 295.00145 * 14 11 10 41 41 H 1.09003 * 109.47068 * 55.00423 * 14 11 10 42 42 H 0.97001 * 119.99544 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.15805 * 359.78125 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2046 0.0000 4 6 3.5620 1.2259 -0.0005 5 6 4.2772 0.0253 -0.0005 6 7 5.6011 -0.2760 -0.0014 7 6 5.7557 -1.5680 -0.0015 8 6 7.0846 -2.2784 -0.0029 9 7 7.5722 -2.4024 -1.3831 10 6 8.8686 -3.0922 -1.4236 11 6 9.3431 -3.2015 -2.8740 12 1 8.5730 -3.6882 -3.4724 13 6 9.6119 -1.8014 -3.4296 14 6 10.6296 -4.0276 -2.9287 15 6 11.0299 -4.2392 -4.3662 16 1 10.4272 -3.8254 -5.1610 17 6 12.1657 -4.9610 -4.6665 18 7 12.8994 -5.4653 -3.6984 19 14 12.6622 -5.2226 -6.4481 20 1 11.6773 -4.5583 -7.3391 21 1 14.0086 -4.6396 -6.6775 22 1 12.6959 -6.6775 -6.7441 23 7 4.5427 -2.1839 -0.0012 24 1 4.3838 -3.1407 -0.0009 25 6 3.5798 -1.1945 -0.0004 26 6 2.1915 -1.1966 -0.0045 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.6471 2.1345 -0.0004 31 1 4.0882 2.1689 -0.0009 32 1 7.8024 -1.7075 0.5861 33 1 6.9664 -3.2713 0.4312 34 1 6.8948 -2.8720 -1.9650 35 1 9.5989 -2.5272 -0.8443 36 1 8.7624 -4.0906 -0.9994 37 1 10.3820 -1.3148 -2.8310 38 1 9.9503 -1.8794 -4.4627 39 1 8.6953 -1.2129 -3.3904 40 1 11.4246 -3.4973 -2.4045 41 1 10.4617 -4.9936 -2.4525 42 1 13.6986 -5.9728 -3.9097 43 1 1.6504 -2.1312 -0.0045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602561981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:06 Heat of formation + Delta-G solvation = 25.945268 kcal Electronic energy + Delta-G solvation = -21283.088916 eV Core-core repulsion = 18133.806829 eV Total energy + Delta-G solvation = -3149.282087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.11986 -38.94673 -38.21074 -35.74840 -34.26979 -33.99382 -32.26870 -31.01401 -29.29058 -28.33692 -26.74618 -25.73682 -24.01802 -23.38113 -22.28550 -21.88786 -20.76586 -18.68518 -18.46349 -18.05930 -16.78805 -16.60832 -16.43670 -16.15764 -15.65991 -15.36083 -15.15676 -14.86068 -14.58618 -14.33652 -14.21671 -13.84809 -13.47810 -13.25732 -13.07598 -12.95940 -12.78198 -12.74171 -12.55683 -12.32227 -12.24228 -12.20782 -11.96576 -11.63446 -11.49324 -11.08837 -10.96859 -10.92408 -10.52924 -9.45095 -9.32055 -8.98140 -8.17155 -6.25391 -0.05361 0.54865 1.39465 1.40704 1.53158 1.68171 1.88778 2.42327 2.84989 3.05723 3.16458 3.35489 3.62911 4.00465 4.08313 4.09998 4.19118 4.31177 4.39021 4.40344 4.48363 4.53080 4.62605 4.76085 4.85401 4.89581 4.92585 4.93265 5.02004 5.09802 5.26623 5.29581 5.42409 5.46398 5.51572 5.55757 5.56709 5.66084 5.81579 5.90235 5.91685 5.97727 6.31465 6.34727 6.41707 6.90714 6.91846 7.42549 8.94859 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.002344 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.733659 B =11943.714496 C =12078.488337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.071 4.071 3 C -0.124 4.124 4 C -0.081 4.081 5 C 0.003 3.997 6 N -0.513 5.513 7 C 0.287 3.713 8 C 0.140 3.860 9 N -0.682 5.682 10 C 0.080 3.920 11 C -0.073 4.073 12 H 0.054 0.946 13 C -0.115 4.115 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.279 1.279 23 N -0.587 5.587 24 H 0.436 0.564 25 C 0.040 3.960 26 C -0.120 4.120 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.343 0.657 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.059 0.941 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.262 0.738 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.183 8.435 10.194 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.101 4.101 5 C -0.115 4.115 6 N -0.234 5.234 7 C 0.019 3.981 8 C 0.010 3.990 9 N -0.315 5.315 10 C -0.049 4.049 11 C -0.092 4.092 12 H 0.073 0.927 13 C -0.172 4.172 14 C -0.005 4.005 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.784 3.216 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.205 1.205 23 N -0.200 5.200 24 H 0.277 0.723 25 C -0.070 4.070 26 C -0.141 4.141 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.172 0.828 31 H 0.148 0.852 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.070 0.930 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -25.110 9.627 10.229 28.773 hybrid contribution 0.147 -2.253 -0.636 2.346 sum -24.964 7.374 9.593 27.741 Atomic orbital electron populations 1.20825 0.88216 1.04078 1.03354 1.20058 0.97681 0.91646 0.97885 1.20883 0.92672 0.99170 1.01678 1.20271 0.94292 0.95499 0.99989 1.19572 0.89453 0.94760 1.07678 1.70371 1.17637 1.13198 1.22223 1.23537 0.88118 0.88245 0.98164 1.20407 0.88099 0.98704 0.91784 1.60329 1.05108 1.57183 1.08861 1.21893 0.90077 0.95905 0.97033 1.21005 0.97157 0.96407 0.94649 0.92723 1.21495 1.00261 0.95814 0.99639 1.19016 0.92500 0.93576 0.95451 1.21669 1.08798 1.32329 0.93730 0.92318 1.25929 0.96770 0.95741 1.01581 1.70098 1.16611 1.37115 1.33648 0.85482 0.78160 0.77868 0.80049 1.18784 1.20655 1.20456 1.43001 1.04784 1.09779 1.62422 0.72299 1.19137 0.92412 0.88984 1.06514 1.20121 0.88542 0.99914 1.05553 0.90127 0.90528 0.89961 0.82751 0.85192 0.87814 0.90446 0.83848 0.91329 0.94694 0.94508 0.94479 0.92156 0.98991 0.98976 0.92969 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.00 71.24 0.71 -0.13 16 2 C -0.07 -1.06 5.88 -19.83 -0.12 -1.17 16 3 C -0.12 -2.04 9.61 22.02 0.21 -1.83 16 4 C -0.08 -1.84 10.05 22.25 0.22 -1.61 16 5 C 0.00 0.09 7.23 39.45 0.29 0.38 16 6 N -0.51 -15.85 11.27 -179.97 -2.03 -17.88 16 7 C 0.29 7.16 7.59 137.92 1.05 8.21 16 8 C 0.14 3.14 6.31 85.56 0.54 3.68 16 9 N -0.68 -18.48 5.94 -517.94 -3.08 -21.56 16 10 C 0.08 2.55 5.07 86.30 0.44 2.98 16 11 C -0.07 -2.93 2.48 -10.79 -0.03 -2.96 16 12 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.11 -4.51 8.89 71.98 0.64 -3.87 16 14 C 0.03 1.66 4.45 29.85 0.13 1.79 16 15 C -0.53 -29.72 8.41 25.60 0.22 -29.50 16 16 H 0.06 3.22 7.05 -2.91 -0.02 3.20 16 17 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 18 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 19 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 N -0.59 -11.59 6.23 -179.23 -1.12 -12.70 16 24 H 0.44 5.46 8.96 -92.71 -0.83 4.63 16 25 C 0.04 0.91 7.31 38.86 0.28 1.19 16 26 C -0.12 -2.05 9.71 22.32 0.22 -1.83 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 29 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 30 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.34 8.68 8.72 -89.69 -0.78 7.90 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 39 H 0.06 2.16 7.75 -2.39 -0.02 2.14 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -71.73 357.40 0.75 -70.98 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -0.60 Total: 15.38 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 5.26 Total: -24.39 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -5.94 Total: -108.64 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.73 0.75 -70.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602561981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.923 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds