Wall clock time and date at job start Tue Mar 31 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35895 * 116.99782 * 2 1 4 4 C 1.38761 * 120.15192 * 359.97438 * 3 2 1 5 5 C 1.37913 * 119.81193 * 180.10457 * 4 3 2 6 6 C 1.38773 * 120.45566 * 0.03229 * 5 4 3 7 7 C 1.37877 * 119.81606 * 359.81799 * 6 5 4 8 8 C 1.38526 * 120.14152 * 180.02562 * 3 2 1 9 9 C 1.50728 * 121.65842 * 180.26443 * 7 6 5 10 10 C 1.52891 * 109.96469 * 343.04852 * 9 7 6 11 11 N 1.47151 * 108.66912 * 50.30164 * 10 9 7 12 12 C 1.46903 * 111.00049 * 165.40628 * 11 10 9 13 13 C 1.53007 * 109.47311 * 176.51845 * 12 11 10 14 14 C 1.50697 * 115.54642 * 292.38975 * 13 12 11 15 15 H 1.08006 * 119.99694 * 114.67160 * 14 13 12 16 16 C 1.37872 * 120.00255 * 294.66824 * 14 13 12 17 17 N 1.31516 * 120.00215 * 165.27915 * 16 14 13 18 18 Si 1.86801 * 119.99759 * 345.27583 * 16 14 13 19 19 H 1.48504 * 109.46892 * 84.56753 * 18 16 14 20 20 H 1.48507 * 109.46957 * 204.56298 * 18 16 14 21 21 H 1.48491 * 109.47427 * 324.56599 * 18 16 14 22 22 C 1.52997 * 117.49888 * 146.71651 * 13 12 11 23 23 C 1.52999 * 117.49869 * 78.05795 * 13 12 11 24 24 C 1.46536 * 110.30297 * 289.02597 * 11 10 9 25 25 H 1.08996 * 109.47225 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46930 * 300.00306 * 1 2 3 27 27 H 1.09001 * 109.46763 * 59.99690 * 1 2 3 28 28 H 1.08001 * 120.08875 * 0.08240 * 4 3 2 29 29 H 1.08002 * 119.76748 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.84875 * 359.94926 * 8 3 2 31 31 H 1.09006 * 109.38788 * 222.89650 * 9 7 6 32 32 H 1.09004 * 109.30648 * 103.14811 * 9 7 6 33 33 H 1.09004 * 109.62742 * 170.10268 * 10 9 7 34 34 H 1.08997 * 109.63230 * 290.49453 * 10 9 7 35 35 H 1.09000 * 109.47209 * 296.51536 * 12 11 10 36 36 H 1.09003 * 109.47221 * 56.51833 * 12 11 10 37 37 H 0.97005 * 120.00075 * 180.02562 * 17 16 14 38 38 H 1.08999 * 117.50007 * 0.02562 * 22 13 12 39 39 H 1.09007 * 117.49243 * 145.02117 * 22 13 12 40 40 H 1.09000 * 117.49467 * 214.98286 * 23 13 12 41 41 H 1.09000 * 117.49812 * 359.97438 * 23 13 12 42 42 H 1.08998 * 109.09406 * 292.02171 * 24 11 10 43 43 H 1.09001 * 109.27984 * 172.61072 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2933 2.3766 -0.0005 5 6 1.9266 3.6017 -0.0027 6 6 3.3123 3.6771 -0.0051 7 6 4.0619 2.5200 -0.0014 8 6 3.4292 1.2868 -0.0005 9 6 5.5688 2.5535 0.0022 10 6 6.0611 3.9387 -0.4178 11 7 5.3604 4.9518 0.3872 12 6 6.0241 6.2582 0.2832 13 6 5.2201 7.3021 1.0611 14 6 3.8670 7.6385 0.4893 15 1 2.9715 7.3948 1.0418 16 6 3.7722 8.2575 -0.7390 17 7 2.6190 8.2926 -1.3705 18 14 5.2816 9.0464 -1.5063 19 1 6.0626 8.0150 -2.2353 20 1 4.8574 10.1079 -2.4544 21 1 6.1245 9.6434 -0.4396 22 6 5.9986 8.4284 1.7438 23 6 5.3668 7.3158 2.5839 24 6 3.9548 5.0397 -0.0177 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2145 2.3245 0.0004 29 1 1.3401 4.5085 -0.0027 30 1 4.0172 0.3810 -0.0001 31 1 5.9491 1.8074 -0.6956 32 1 5.9319 2.3292 1.0052 33 1 7.1350 4.0132 -0.2462 34 1 5.8472 4.0985 -1.4746 35 1 7.0290 6.1894 0.6997 36 1 6.0844 6.5528 -0.7645 37 1 2.5524 8.7278 -2.2349 38 1 7.0835 8.4261 1.6384 39 1 5.5318 9.4128 1.7796 40 1 4.4847 7.5686 3.1722 41 1 6.0357 6.5809 3.0317 42 1 3.8989 5.4544 -1.0241 43 1 3.4221 5.6950 0.6715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602895821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:29 Heat of formation + Delta-G solvation = 24.182564 kcal Electronic energy + Delta-G solvation = -23321.291902 eV Core-core repulsion = 20139.640628 eV Total energy + Delta-G solvation = -3181.651274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09178 -38.63550 -37.11531 -35.16678 -32.46864 -32.13007 -30.45818 -29.11527 -27.35991 -26.06970 -25.52962 -23.24633 -22.05832 -21.82310 -21.35686 -19.22229 -18.72427 -17.41272 -16.66637 -15.91164 -15.63673 -15.44625 -14.98914 -14.57897 -14.15555 -14.12419 -13.51914 -13.44898 -13.04142 -12.92656 -12.64981 -12.53102 -12.37962 -12.06248 -11.70009 -11.61906 -11.42996 -11.14497 -10.87621 -10.63576 -10.43631 -10.42268 -10.31558 -10.16527 -9.91375 -9.42610 -9.03339 -8.65333 -8.41589 -8.32813 -7.75164 -7.33079 -6.19299 -4.10148 1.69519 1.84649 3.23783 3.35571 3.41926 3.43401 4.11856 4.38533 4.52624 4.99281 5.00595 5.08227 5.15410 5.24819 5.30223 5.33031 5.45119 5.47048 5.58640 5.69566 5.76304 5.88858 5.92144 6.08615 6.13601 6.14830 6.23634 6.31666 6.39785 6.43426 6.51366 6.61265 6.64834 6.72981 6.82552 6.88296 6.99748 7.06195 7.11528 7.21135 7.43261 7.67094 7.72374 7.91535 7.96542 8.43958 8.82126 9.46097 10.91262 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.005020 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.682563 B = 5576.022855 C = 6093.679177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.107 3.893 4 C -0.209 4.209 5 C -0.074 4.074 6 C -0.092 4.092 7 C -0.043 4.043 8 C -0.157 4.157 9 C -0.069 4.069 10 C 0.046 3.954 11 N -0.521 5.521 12 C 0.089 3.911 13 C -0.002 4.002 14 C -0.483 4.483 15 H 0.080 0.920 16 C 0.081 3.919 17 N -0.887 5.887 18 Si 0.863 3.137 19 H -0.280 1.280 20 H -0.294 1.294 21 H -0.251 1.251 22 C -0.197 4.197 23 C -0.169 4.169 24 C 0.095 3.905 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.029 0.971 37 H 0.264 0.736 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.968 -12.103 1.760 12.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.063 3.937 4 C -0.227 4.227 5 C -0.092 4.092 6 C -0.093 4.093 7 C -0.043 4.043 8 C -0.176 4.176 9 C -0.107 4.107 10 C -0.083 4.083 11 N -0.245 5.245 12 C -0.038 4.038 13 C -0.003 4.003 14 C -0.520 4.520 15 H 0.098 0.902 16 C -0.122 4.122 17 N -0.524 5.524 18 Si 0.690 3.310 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.175 1.175 22 C -0.235 4.235 23 C -0.206 4.206 24 C -0.032 4.032 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.963 -12.361 2.080 12.571 hybrid contribution 0.387 0.859 -1.471 1.747 sum 1.350 -11.502 0.608 11.597 Atomic orbital electron populations 1.22966 0.79003 1.03250 1.01322 1.86005 1.20898 1.27459 1.89466 1.18827 0.92235 0.83791 0.98871 1.21094 0.99506 0.92389 1.09743 1.20977 0.94204 0.97196 0.96851 1.20126 0.93361 0.95793 1.00001 1.19388 0.95551 0.91441 0.97914 1.20215 0.91160 0.97780 1.08406 1.20481 0.91051 0.97041 1.02077 1.22119 0.98269 0.92368 0.95508 1.62216 1.02698 1.06384 1.53155 1.21855 0.95509 0.88206 0.98259 1.19384 0.96038 0.93860 0.90988 1.20174 0.89657 1.38880 1.03254 0.90209 1.24851 0.95513 0.95554 0.96309 1.69938 1.25120 1.42691 1.14612 0.87107 0.84565 0.79752 0.79563 1.20598 1.22097 1.17508 1.23051 0.97083 0.95171 1.08225 1.22657 1.01815 1.00884 0.95277 1.21566 0.88116 0.91194 1.02302 0.88780 0.92842 0.92870 0.86020 0.85202 0.86045 0.91062 0.90065 0.91192 0.95063 0.92950 0.95307 0.92585 0.91600 0.89750 0.90167 0.90784 0.93102 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.82 101.05 0.99 1.29 16 2 O -0.32 -4.58 10.50 -19.41 -0.20 -4.78 16 3 C 0.11 1.69 6.68 -39.28 -0.26 1.42 16 4 C -0.21 -3.28 9.04 -39.51 -0.36 -3.64 16 5 C -0.07 -1.32 9.64 -39.50 -0.38 -1.70 16 6 C -0.09 -1.75 5.80 -104.58 -0.61 -2.36 16 7 C -0.04 -0.72 5.77 -104.61 -0.60 -1.33 16 8 C -0.16 -2.49 9.59 -39.34 -0.38 -2.86 16 9 C -0.07 -1.03 5.95 -27.93 -0.17 -1.19 16 10 C 0.05 0.77 5.56 -3.74 -0.02 0.74 16 11 N -0.52 -10.23 4.78 -236.26 -1.13 -11.36 16 12 C 0.09 1.85 4.73 -3.82 -0.02 1.83 16 13 C 0.00 -0.03 0.72 -155.66 -0.11 -0.15 16 14 C -0.48 -12.26 5.92 -34.44 -0.20 -12.47 16 15 H 0.08 2.22 7.34 -52.48 -0.38 1.83 16 16 C 0.08 2.15 5.21 -17.82 -0.09 2.05 16 17 N -0.89 -25.00 13.96 55.43 0.77 -24.22 16 18 Si 0.86 20.59 25.52 -169.99 -4.34 16.25 16 19 H -0.28 -6.64 6.61 56.52 0.37 -6.26 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.25 -5.73 5.85 56.52 0.33 -5.40 16 22 C -0.20 -4.06 7.77 -26.70 -0.21 -4.26 16 23 C -0.17 -3.39 9.96 -26.70 -0.27 -3.65 16 24 C 0.09 2.01 3.83 -5.20 -0.02 1.99 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.49 7.67 -51.93 -0.40 0.10 16 27 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 28 H 0.12 1.61 6.32 -52.49 -0.33 1.27 16 29 H 0.13 2.35 8.06 -52.49 -0.42 1.92 16 30 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 34 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 35 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.03 0.65 5.54 -51.93 -0.29 0.36 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.80 8.08 -51.92 -0.42 1.38 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.05 1.23 7.79 -51.93 -0.40 0.82 16 43 H 0.14 3.20 4.72 -51.93 -0.24 2.95 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -27.93 332.86 -9.32 -37.25 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.74 Total: 6.14 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -2.70 Total: -24.29 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.36 Total: -35.58 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.20 Total: -4.78 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.34 Total: 16.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.93 -9.32 -37.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602895821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.433 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds